nphs2 (nphs2,LOC107728590,LOC107669835,LOC107653553,LOC107592691,LOC107715061)


Basic Information

Item Value
gene id nphs2
gene name nphs2,LOC107728590,LOC107669835,LOC107653553,LOC107592691,LOC107715061
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9257131 ~ 9259978 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222293.1
GATACTCCCTGTTCAGACCCACAGAAGTTCTCAGGAGCAGAGCAGACATCAGATGCTTCTTATGAGCGAGGCCGTGATGGagaaaagaacagaaacatCTCAGCAGTCTTCAAGAACTGGACGGGTAACGCGAGAACCATCGCCTTCTGCTAAAGAGAGGAAAACCAAAGCCCCCAAATCAGTGAAGCTCCAAGAGCcccacaaaagaaaagaaaaaacagaagaggaagaagaaagagcTGAAGCCAAAGAGGCTCAGATCAACTCCAGCAGCACTGTTGTAAATGTAGACAGTGTGAGGGAACGAATAAAAGAAGATCGAGAGGAGTTATTGGGATTATTAGAGACTGAAGGGCCTGGAGAAGccTTGAAGAAAACATACCTTGGAGTTTGCGAGCTGCTTCTTATCGTTTTTGTCCTGTCTGTGGTGATCTTCTTCTTTCCTATTTCCATATGGTTCTGTGTGAAGATTGTGAGAGAACATGAGAGAGCCGTGAAATTTCGATTGGGACATTTACTGCAGAAGAGACCTAGGGGCCCtgGGCTGATGTTTTATCTCCCATTTTTGGATGTGTGCCATATTGTCGACATTCGTCTGAAAATACTGAAGATCCCTCCTCACACGGTGGTGACCAAAGATCTGGTGTGTACCGAAGTAAGCGCGGTGTGTTACTATCGTATCgagaatgtgtctgtgtgttattCCTCCCTTGCCGACATCCCAGATGTGCTGCAGGCTTTGGCCCAGGTGTCTGTAAGAGAGGTATTGGCCCGTCACGCCTTCACTGACATTTTGCTGGACCGCAAACGCATGGCCCGGGAGATTCAGGTCAGTTTAGACTCGGTAACCTGCAGGTGGGGTATCAATGTGGAAAGAGCAGAAATAGAAGAAATCCACCTTCCACCTGAGCTGCAACGCAACTTTGCTGTGGAGGCCGAAGCGAGACGGCAGGCACAAGTCAAAGTGATCTCTGCAGAGGGAGAAAAGGCGGCTTGCGAGGCTTTGAAGGCCTCCGTAGAGTCTCTTTCTGGTTCTCCACTGGCTGTGCACCTTCGTCTCCTGCAGCTCCTCAACAATCTGCGCTCTGAGCAGCCCGCCGTGGTCCTCAACATACCTTCTGATGTCCTTACTCAATCCATCAACCTCACCAGTTTGACCAGACCTGCCAATCAAGGTCTGACCGCAGGTGACGGCTCAGATGATGCAAACAAAGACTCACCCATGATGTAAAGACAGCTGTAAGTGTTTACTTAGGAAGAACACTTACTTATTTTACCGATACAGTATTGACCTTGCACTCTCATTTTAACCTAACATACTAATAATCTACACTGTTAAAGCTGCAGTAAATTTTGGTGCTCTAGTGAAAAACATATTATAGGTGTAGTGTAGTGGTTCAGAAGaaccaaaaccaaaaactgTTTGGAAAGTGGATTTATGATTTACTTGTTTATTATCttaattgtaaacaaaaaaaagttacagactgcagcatGTAATCTTCAGCAAACCtcataatgaataattattttacgtTATCTGCAATACAATTACACTTCAAATTca
>XM_043222294.1
GATACTCCCTGTTCAGACCCACAGAAGTTCTCAGGAGCAGAGCAGACATCAGATGCTTCTTATGAGCGAGGCCGTGATGGagaaaagaacagaaacatCTCAGCAGTCTTCAAGAACTGGACGGGTAACGCGAGAACCATCGCCTTCTGCTAAAGAGAGGAAAACCAAAGCCCCCAAATCAGTGAAGCTCCAAGAGCcccacaaaagaaaagaaaaaacagaagaggaagaagaaagagcTGAAGCCAAAGAGGCTCAGATCAACTCCAGCAGCACTGTTGTAAATGTAGACAGTGTGAGGGAACGAATAAAAGAAGATCGAGAGGAGTTATTGGGATTATTAGAGACTGAAGGGCCTGGAGAAGccTTGAAGAAAACATACCTTGGAGTTTGCGAGCTGCTTCTTATCGTTTTTGTCCTGTCTGTGGTGATCTTCTTCTTTCCTATTTCCATATGGTTCTGTGTGAAGATTGTGAGAGAACATGAGAGAGCCGTGAAATTTCGATTGGGACATTTACTGCAGAAGAGACCTAGGGGCCCtgGGCTGATGTTTTATCTCCCATTTTTGGATGTGTGCCATATTGTCGACATTCGTCTGAAAATACTGAAGATCCCTCCTCACACGGTGGTGACCAAAGATCTGGTGTGTACCGAAGCTTTGGCCCAGGTGTCTGTAAGAGAGGTATTGGCCCGTCACGCCTTCACTGACATTTTGCTGGACCGCAAACGCATGGCCCGGGAGATTCAGGTCAGTTTAGACTCGGTAACCTGCAGGTGGGGTATCAATGTGGAAAGAGCAGAAATAGAAGAAATCCACCTTCCACCTGAGCTGCAACGCAACTTTGCTGTGGAGGCCGAAGCGAGACGGCAGGCACAAGTCAAAGTGATCTCTGCAGAGGGAGAAAAGGCGGCTTGCGAGGCTTTGAAGGCCTCCGTAGAGTCTCTTTCTGGTTCTCCACTGGCTGTGCACCTTCGTCTCCTGCAGCTCCTCAACAATCTGCGCTCTGAGCAGCCCGCCGTGGTCCTCAACATACCTTCTGATGTCCTTACTCAATCCATCAACCTCACCAGTTTGACCAGACCTGCCAATCAAGGTCTGACCGCAGGTGACGGCTCAGATGATGCAAACAAAGACTCACCCATGATGTAAAGACAGCTGTAAGTGTTTACTTAGGAAGAACACTTACTTATTTTACCGATACAGTATTGACCTTGCACTCTCATTTTAACCTAACATACTAATAATCTACACTGTTAAAGCTGCAGTAAATTTTGGTGCTCTAGTGAAAAACATATTATAGGTGTAGTGTAGTGGTTCAGAAGaaccaaaaccaaaaactgTTTGGAAAGTGGATTTATGATTTACTTGTTTATTATCttaattgtaaacaaaaaaaagttacagactgcagcatGTAATCTTCAGCAAACCtcataatgaataattattttacgtTATCTGCAATACAATTACACTTCAAATTca

Function

symbol description
nphs2 Acts upstream of or within pronephric glomerulus development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in pronephric glomerular basement membrane; pronephric glomerulus; pronephric podocyte; pronephros; and renal glomerulus. Used to study proteinuria. Human ortholog(s) of this gene implicated in nephrotic syndrome type 2. Orthologous to human NPHS2 (NPHS2 stomatin family member, podocin).

NR:

description
podocin-like

GO:

id name namespace
GO:0032835 glomerulus development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K18268 NPHS2; podocin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222293.1 True 1567 mRNA 0.45 8 9257131 9259978
XM_043222294.1 False 1486 mRNA 0.45 9 9257131 9259978

Neighbor

gene id symbol gene type direction distance location
patj inadl,LOC107669802,LOC107653652,LOC107731530,LOC107715056,LOC107588105 coding downstream 261103 8892566 ~ 8996028 (-)
stx6 stx6,LOC107669815,LOC107731540,LOC107715114,LOC107653648 coding downstream 400676 8849997 ~ 8856455 (-)
plekhb2 plekhb2,LOC107731538,LOC107669828,LOC107715113,LOC107653647 coding downstream 431841 8819851 ~ 8825290 (-)
cts12 cts12,LOC107592744,LOC107669798,LOC107588120,LOC107653645,LOC107731531,LOC107715055 coding downstream 451484 8801762 ~ 8805647 (-)
lama3 LOC107669845,LOC107731542,LOC107592704 coding downstream 456389 8786758 ~ 8800742 (-)
LOC122327620 si:ch211-197g15.9,LOC107655250,LOC107728562,LOC107669808,LOC107728557,LOC107592685,LOC107669809 coding upstream 101295 9361273 ~ 9365286 (-)
LOC122327619 LOC107728561,LOC107592686,LOC107599470 coding upstream 106353 9366331 ~ 9369136 (-)
LOC122327621 si:ch211-197g15.7,LOC107669809,LOC107728557,LOC107592684,LOC107655250,LOC107592683,LOC107669808 coding upstream 110812 9370790 ~ 9374225 (-)
LOC122328207 NA coding upstream 179928 9439906 ~ 9442370 (-)
LOC122328209 si:ch211-197g15.8,si:ch211-197g15.7,LOC107599470 coding upstream 184097 9444075 ~ 9446244 (-)
G151122 NA non-coding downstream 109830 9145305 ~ 9147301 (-)
G151112 NA non-coding downstream 307072 8949616 ~ 8950059 (-)
G151111 NA non-coding downstream 308104 8948788 ~ 8949027 (-)
G151110 NA non-coding downstream 339988 8915901 ~ 8917143 (-)
G151086 NA non-coding downstream 448596 8807108 ~ 8808535 (-)
G151266 NA non-coding upstream 100553 9360531 ~ 9454347 (-)
G151280 NA non-coding upstream 127167 9387145 ~ 9398096 (-)
G151289 NA non-coding upstream 166175 9426153 ~ 9464513 (-)
G151319 hapln4,LOC107554801,LOC107728536,LOC107719665,LOC107599484 non-coding upstream 356812 9616790 ~ 9621165 (-)
LOC122327858 NA non-coding upstream 559715 9819693 ~ 9865888 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other downstream 85200 9013548 ~ 9171931 (-)
G151107 tal1,LOC107669848 other downstream 370190 8884121 ~ 8886941 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 644387 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 963923 8286372 ~ 8293208 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other downstream 1638733 7609856 ~ 7618398 (-)
gpx4a gpx4a,LOC108429535 other upstream 238691 9498669 ~ 9503006 (-)
G151425 NA other upstream 697833 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 1022044 10282022 ~ 10321663 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other upstream 1159149 10419127 ~ 10422354 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other upstream 1675074 10935052 ~ 10994952 (-)

Expression


Co-expression Network