LOC122327116 (nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250)


Basic Information

Item Value
gene id LOC122327116
gene name nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6962514 ~ 6971960 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222298.1
tcttctctctctttctcgctcggTATTCCGTCCCACGCGCGGCACCGCCCACGCGAGGATTTGCGTCAAGCCGGCGCGTGGGAGTGAGAGAGCAATGCAGCTTACATCGGAATATCCCCgcacaagagagagagacggcacCGATGAGTCTTCAACGCGCTTTCTCTCCTTCGCGAGAGACGGAGCGCTGCCTCGAGACGGCGGCCAGCACCGGGAGCACTCGCGCGCAGCAGCTGCGAAAAAGAGCCATGTCAGTGCTGCTGCCACGTTCCTTGGGCGAGCTGCAACTGTACCGGATCCTGCAGAAGGCCAACTTGCTCTGCTACTACGAAGCCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTCTGTGAGGCTGGCGAGGAAGAGTTCCTCGAGATCATGGCCCTTGTTGGAATGGCGACCAAACCCCTTCATGTTCGAAGACTCCAGAAAGCTCTACGGGATTGGGTCACCAACCCTTCCGTCTTCAACCAACCGTTGACATCTCTTCCCGTTTGCAGTATACCGGTGTACAAGCTACCCGAAAGTTCCAACAGCAATGGGCAACAGAACCAACTTGCGGTTCCCAGAGCATTGTTACCCACAAGCCCCAGTCCTGGAAGGCTGGACCTCAGCAGGGACGGGACGCCAGGGTGCTCCCCGCTGCAAGGCGCTAGCGAGAGTCGTTTCTGGGGAAGCGAGAGCGAGCACAGCCTTTCTCCATCTGGAGCTTGTTCCCCGTGTTCACCCCACGATGCTCTTGACGCTCTCGATTCTGCCGCCGTCCAGTGCGTGATGGAATGCGTAGAGCGACTAGCCCAGACGTTGCCCAAGAGCGACCCCACAGAAATCAAAGAACACATTCGCGCCAACAAGAAGCTCAGCAAGATGATCGGCCACATCTGCGAGATGAGCGAAGACAGTCCGCAAAAGGAGGTGGAGATTCGGAAATACAGCGCCATCTACGGAAGGTTCGATTCCAAGAGGCGGGACGGCCGGCAGCTTACGATGCACGAGCTAACGGTCAACGAAGCATCCGCTCAGCTGTGTATGAAAGATCTGTCGCTGCTGACCCGAAGAGATGAACTTTTCTCGCTGTCCAGGCAGATTTCGCGGGAAGTTACCTACAAATACACCCGCAGGAGGTCCCACTGCGGTGATGACGATGAACCGTCTCCCAAGAGGATCAAATCTGAAGATGGTGTGTACGATTTGCAGGAGGCTCTTCATGTTCTTCACACACGTCAAGAAACGGTGAGAGAACAGCTTGCAATGGCCAAATCTAAAGGAGAGGAGACGATCAGACATAGTCTACAGGTACAGCTGGACTCTCTGTTGGCCAAGCAGGTGGAGCTTTTGCGTGACGCTGCCGTCCAAGAGAGACTGAAATCGTTGGACTGGCGGATTCCAACAGCAGCGCTGAAATACCTCGCTCCGACTGCTCAACACTGCAACAGCGGCCTCTCGAATCTCTCTGGCGAGAGACCCCTGAACCTGCGCCTGACAGATGTCCCGTTGGGTAGGCAATTAGCCAATGAGCTCAAACGACATCACAAGCAGAACGCAGAGGAACGGCATCATCACCAACAACAGACGTCCGAAGAGAGAAGGACGGCGGCCACAGaaaaCGGGTCTCAGAAGGAGCCTGGGCTCCTGGAGAAGAAAACCATCAAATCAGAACCAGAGGACTCCAGATAACGTCTTCGGCCTGAAAGTGAAAGCTTGCGTTTTGTTTAGTACTGAAACAGTGTGGCCTTAACAACTGTAAATGCCTAGAGATCCATTTatttagagttttatttttatttctaattttagaa
>XM_043222299.1
ggtcttctctctctttctcgctcggTATTCCGTCCCACGCGCGGCACCGCCCACGCGAGGATTTGCGTCAAGCCGGCGCGTGGGAGTGAGAGAGCAATGCAGCTTACATCGGAATATCCCCgcacaagagagagagacggcacCGATGAGTCTTCAACGCGCTTTCTCTCCTTCGCGAGAGACGGAGCGCTGCCTCGAGACGGCGGCCAGCACCGGGAGCACTCGCGCGCAGCAGCTGCGAAAAAGAGCCATGTCAGTGCTGCTGCCACGTTCCTTGGGCGAGCTGCAACTGTACCGGATCCTGCAGAAGGCCAACTTGCTCTGCTACTACGAAGCCTTCATCCAGCAGGGCGGCGACGATGTGCAGCAGCTCTGTGAGGCTGGCGAGGAAGAGTTCCTCGAGATCATGGCCCTTGTTGGAATGGCGACCAAACCCCTTCATGTTCGAAGACTCCAGAAAGCTCTACGGGATTGGGTCACCAACCCTTCCGTCTTCAACCAACCGTTGACATCTCTTCCCGTTTGCAGTATACCGGTGTACAAGCTACCCGAAAGTTCCAACAGCAATGGGCAACAGAACCAACTTGCGGTTCCCAGAGCATTGTTACCCACAAGCCCCAGTCCTGGAAGGCTGGACCTCAGCAGGGACGGGACGCCAGGGTGCTCCCCGCTGCAAGGCGCTAGCGAGAGTCGTTTCTGGGGAAGCGAGAGCGAGCACAGCCTTTCTCCATCTGGAGCTTGTTCCCCGTGTTCACCCCACGATGCTCTTGACGCTCTCGATTCTGCCGCCGTCCAGTGCGTGATGGAATGCGTAGAGCGACTAGCCCAGACGTTGCCCAAGAGCGACCCCACAGAAATCAAAGAACACATTCGCGCCAACAAGAAGCTCAGCAAGATGATCGGCCACATCTGCGAGATGAGCGAAGACAGTCCGCAAAAGGAGGTGGAGATTCGGAAATACAGCGCCATCTACGGAAGGTTCGATTCCAAGAGGCGGGACGGCCGGCAGCTTACGATGCACGAGCTAACGGTCAACGAAGCATCCGCTCAGCTGTGTATGAAAGATCTGTCGCTGCTGACCCGAAGAGATGAACTTTTCTCGCTGTCCAGGCAGATTTCGCGGGAAGTTACCTACAAATACACCCGCAGGAGGTCCCACTGCGGTGATGACGATGAACCGTCTCCCAAGAGGATCAAATCTGAAGATGGTGTGTACGATTTGCAGGAGGCTCTTCATGTTCTTCACACACGTCAAGAAACGGTACAGCTGGACTCTCTGTTGGCCAAGCAGGTGGAGCTTTTGCGTGACGCTGCCGTCCAAGAGAGACTGAAATCGTTGGACTGGCGGATTCCAACAGCAGCGCTGAAATACCTCGCTCCGACTGCTCAACACTGCAACAGCGGCCTCTCGAATCTCTCTGGCGAGAGACCCCTGAACCTGCGCCTGACAGATGTCCCGTTGGGTAGGCAATTAGCCAATGAGCTCAAACGACATCACAAGCAGAACGCAGAGGAACGGCATCATCACCAACAACAGACGTCCGAAGAGAGAAGGACGGCGGCCACAGaaaaCGGGTCTCAGAAGGAGCCTGGGCTCCTGGAGAAGAAAACCATCAAATCAGAACCAGAGGACTCCAGATAACGTCTTCGGCCTGAAAGTGAAAGCTTGCGTTTTGTTTAGTACTGAAACAGTGTGGCCTTAACAACTGTAAATGCCTAGAGATCCATTTatttagagttttatttttatttctaattttagaa

Function

symbol description
nab1a Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in female organism; rhombomere 3; and rhombomere 5. Orthologous to human NAB1 (NGFI-A binding protein 1).

NR:

description
PREDICTED: NGFI-A-binding protein 1-like isoform X1

GO:

id name namespace
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K22388 NAB; NGFI-A-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222298.1 True 1825 mRNA 0.55 8 6962514 6971958
XM_043222299.1 False 1764 mRNA 0.55 8 6962514 6971960

Neighbor

gene id symbol gene type direction distance location
LOC122328177 NA coding downstream 27941 6929150 ~ 6934573 (-)
LOC122327117 LOC107570603,LOC107690762 coding downstream 33244 6926964 ~ 6929270 (-)
LOC122328175 LOC107751494,LOC107739353 coding downstream 82046 6874459 ~ 6880468 (-)
cnot9 rqcd1,cnot9,LOC107586962,LOC107687874,LOC107600965,LOC107653560 coding downstream 165429 6791674 ~ 6797085 (-)
plcd4a plcd4a,LOC107739328,LOC107600964,LOC107687884,LOC107586990,LOC103363317 coding downstream 172985 6775322 ~ 6789529 (-)
LOC122327115 LOC107687869,LOC107739325,LOC107653600,LOC107600976,LOC107754251 coding upstream 14605 6986565 ~ 6994634 (-)
LOC122327118 LOC107751494,LOC107739353,LOC107653563,LOC107600951 coding upstream 25948 6997908 ~ 7002547 (-)
ahr2 ahr2,LOC107751478,LOC107687867,LOC107600952 coding upstream 86197 7058157 ~ 7106640 (-)
cntnap5b cntnap5b,LOC107751476,LOC107569969,LOC107653604,LOC107739344,LOC107600954,LOC108411251,LOC105905662 coding upstream 262941 7234901 ~ 7283785 (-)
s100b s100b,LOC107687865,LOC107571703,LOC107600981 coding upstream 415097 7387057 ~ 7389184 (-)
G150494 NA non-coding downstream 21888 6939618 ~ 6940626 (-)
G150490 LOC107739322,LOC107653601,LOC107586968,LOC107687868,LOC107751479 non-coding downstream 59699 6899243 ~ 6902815 (-)
G150488 NA non-coding downstream 75378 6886549 ~ 6887136 (-)
G150472 NA non-coding downstream 157074 6799163 ~ 6805440 (-)
G150456 NA non-coding downstream 352886 6607789 ~ 6609628 (-)
G150503 NA non-coding upstream 31000 7002960 ~ 7004118 (-)
G150538 NA non-coding upstream 33096 7005056 ~ 7005447 (-)
G150542 NA non-coding upstream 50441 7022401 ~ 7022697 (-)
LOC122327846 NA non-coding upstream 199382 7171342 ~ 7174445 (-)
G150564 NA non-coding upstream 224393 7196353 ~ 7196683 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other downstream 23514 6822203 ~ 6939000 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other downstream 48956 6906000 ~ 6913558 (-)
nab1a nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950 other downstream 72857 6846890 ~ 6889657 (-)
mfsd6a mfsd6a,LOC107687869,LOC107739325,LOC107600976,LOC107653600,LOC107754251,LOC105022531 other downstream 89314 6865223 ~ 6873200 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other downstream 233824 6714794 ~ 6728690 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other upstream 48794 7020754 ~ 7055562 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other upstream 637896 7609856 ~ 7618398 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other upstream 1314412 8286372 ~ 8293208 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other upstream 1628390 8600350 ~ 8612744 (-)
G151107 tal1,LOC107669848 other upstream 1912161 8884121 ~ 8886941 (-)

Expression


Co-expression Network