hsd11b1la (hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913)


Basic Information

Item Value
gene id hsd11b1la
gene name hsd11b1la,LOC107719662,LOC107586454,LOC107655187,LOC100006793,LOC107675913
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10422888 ~ 10426307 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222316.1
AATTTATTGCTCCCAAAATTATTTGCGCGACGTAAATCGCATTGAACTTTGATATGACTCCGCCTTTTGACACACATATGATCCTGTTCTGCTGGTTCAGTTAGAGCAACCACGTTACTGATTTTTGACAGTTGATCAACTGCATACTTTCGTGCATTTTAATCGTACACAAATGAATTTTTACGCAAAGTTATTGTTGCTGGGCAGCACATGCGTTGCTTTCATCGCGTTTCGATGGAGCGCTCCATCATTTAATAAAGAGTCCTTGAAAGGTTCCAGGGTGCTGGTGACCGGCGCCAGTACTGGCATCGGCGAGCAGCTGGCGTACCACTACGCCCGTTTAGGAGCCCAACTCGTTATCACGGCGAGGAGAGCAAACGTCCTAGAACAGGTTGCGAGTAAGTGCTTGGAATTGGGAGCTCAAAGGGCCTTGTTCGCCCCTGCGGACATGGCGAGCCCCTCGGAGGCTGAAAAGGTCGTGCAGTACGCCATCGAACAGCTCGGGGGTCTGGATTACCTGGTTCTGAATCACATCGGGCCCAGTCCATACGGAATGTGGGATGGAGACGTGGAGCACACTCGATGGCTGCTAGAGGTCAATTTTCTTAGTTACGCACAGATGACTCAGAAAGCTCTGCCAACTCTTGAAAAGAGTAACGGATCGATAGTTGTGGTTTCCTCCCTGCTAGGTAAAATATGCGGCCCCTTTGCTTTGCCGTATGCCGCAACGAAATTTGCACTCAATGGTTTCTTTGGAGGCCTTCAGCATGAGCTAGCTATGCAAAAAAGCAAAGTGTCCATAACCATCTGCATACTCGGCCTGATCGACACAGACAGCGCAATGGAGAAAATCAAAGGTTACATCAATATGACTGCCTACCCTTCACACGAAGCTGCCTGGCACATTATCGAAGCTGGAGCATCTCGACGGCCTGAGACCTTTTACCCTTGGTACACCTTCTACGCCTGTATATTCAGGGATTGGTTCCCATACGCCAGGGACCAGGCCATTCAAAAGTCCTACACATATAATCCACAAGTTACCAAAGAACAAGTTTCTGGAAGATGACAGCGGAAAATCGACTCGTGGAGCGGAGCATTATAGGTTAACGTATCGTGCTTTTACGCGCCAAGCCCCGGTGCTCATGTGGGTGATGAGTTCTTCTCTCTGTTGTTAAAGACCAAAAATAAAGCTATACCCTACTAAGAAGTTTTTTATGATTAAGGTGATCTGCATTACATCATCAAGCACACACTGCGGTAAATATTAAAAGAGTTTAGCATTGTGTGTTTTCCCTGTTCGCAAACgttgtgcactttttgtgtcaGAAGCTGTCAAAAACCATATGTTTCATGTAATCAGGACGCCGAACGGAAGTTGCTTTGTCTGCTTCAGCTCTGTAAAGCCCTCTGGACTTACCTCACACTTTCTTATCAGCCGCACACGCTATCGATGTTTGTAAACTCTACAGTAAAGATGTCCCACTGAAA

Function

symbol description
hsd11b1la Predicted to enable steroid dehydrogenase activity. Predicted to be located in extracellular region. Is expressed in intestinal bulb. Orthologous to human HSD11B1L (hydroxysteroid 11-beta dehydrogenase 1 like).

NR:

description
PREDICTED: hydroxysteroid 11-beta-dehydrogenase 1-like protein

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0005576 extracellular region cellular_component
GO:0016229 steroid dehydrogenase activity molecular_function

KEGG:

id description
K15680 HSD11B1; corticosteroid 11-beta-dehydrogenase isozyme 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222316.1 True 1491 mRNA 0.47 6 10422888 10426307

Neighbor

gene id symbol gene type direction distance location
LOC122328195 LOC107726533,LOC107596895 coding upstream 4672 10413349 ~ 10418216 (+)
LOC122328194 NA coding upstream 10434 10410257 ~ 10412454 (+)
LOC122327820 LOC107675898,LOC107726531 coding upstream 14405 10407145 ~ 10408483 (+)
LOC122327821 LOC107726539,LOC107728585,LOC107675904 coding upstream 21161 10400426 ~ 10401727 (+)
LOC122327181 NA coding upstream 23340 10398269 ~ 10399548 (+)
rgmd LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903 coding downstream 30898 10457205 ~ 10463197 (+)
hmg20b hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902 coding downstream 289933 10716240 ~ 10720317 (+)
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding downstream 294793 10721100 ~ 10759871 (+)
foxq2 foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973 coding downstream 429508 10855815 ~ 10857119 (+)
nfil3-4 LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432 coding downstream 497441 10923748 ~ 10930951 (+)
G151516 NA non-coding upstream 1852 10388550 ~ 10421036 (+)
G151487 NA non-coding upstream 74002 10347829 ~ 10348886 (+)
G151382 NA non-coding upstream 233716 10188578 ~ 10189172 (+)
G151373 NA non-coding upstream 235305 10185635 ~ 10187583 (+)
G151345 LOC107655225,LOC107554818,LOC107728568,LOC107687715,LOC107599463 non-coding upstream 260442 10151480 ~ 10162446 (+)
G151592 NA non-coding downstream 239749 10666056 ~ 10669212 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding downstream 275315 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding downstream 282737 10709044 ~ 10709110 (+)
G151603 NA non-coding downstream 284206 10710513 ~ 10711972 (+)
G151624 mbd3,LOC108427158 non-coding downstream 351420 10777727 ~ 10840314 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 429447 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 459254 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 512095 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 529381 9888163 ~ 9893507 (+)
G151232 NA other upstream 842737 9577679 ~ 9580151 (+)
G151620 NA other downstream 379745 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 448121 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 491782 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 508728 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 891800 11318107 ~ 11328230 (+)

Expression


Co-expression Network