LOC122327136 (tm4sf4,LOC107572086,LOC107691056,LOC107753508,LOC107662946)


Basic Information

Item Value
gene id LOC122327136
gene name tm4sf4,LOC107572086,LOC107691056,LOC107753508,LOC107662946
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 14506280 ~ 14508164 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222322.1
CAAGCACAGGAACGGACGCCTAACCCGAACAAAGGACTCCAGACCAACCCACACCAGTGCACCCTTCTCTGGACTGTATTTGACTTTAGAAAAGACTGAATCATGTGTTCTGGAAATTTCGCCAAATGTCTGGGGATCACCCTCCTCCCACTGGCCATCATCTGCATCCTCTGCAACATTCTACTGTTTTTCCCTGGCGGTAATGTAGCTGATCAGAGTAGCGACATCACGAACGAAGTCTTTTACTTCGGAGGAATTCTGGGATCCGGTGTGCTGATGATTTTCCCCGCGCTAGTTTTTCTGGGCTTGAAGAACAACGACTGCTGTGGCTGCTGTGGAAATGAGAGCTGCGGGAAACGTTTTGCGATGTTCAGCTCAATCCTGTTCGCTGCAGTCGGGGCTGCGGGCGCCACTTACTCCGTTATCGTGTCTTGTGTGGCCATTAATCACGGGCCCAAGTGCTTCATCAGCTATTTCAACGGGACTGTCCAACAAATTGCCACTTACCCATTTGAAGACGGAAACTACCTGTCCAACAGAACGCTGTGGGATCTGTGCGAGGGTCCGGGCGATATTGTCACATGGCATCTGACCCTGTTCTCGATGCTGCTGATTGCTGGTTTGGTTCAGATCGGTCTGTGCGCCTTCCAGGTGATCAATGGGCTCATCGGAACAATCTGTGGAGACGGCTGCTGTGGGagCTCCTAAACCATTCAGAATGGACTTGGATCAATGATTCTTCAGGACTAATCAATCGTACATCCATATCTGTAATACTCAAAACTTTCACCTCCTGATTTGTATATATACTGCTCAGATGGATGTTGTTTTCTTCTGAGTTTGCTGTATCTGCCTGATGGCTGATGGCTTATGAAGgcaacatatatattatgtttcaTATCGATTTATATGATATAGGATATTGATATGTagtatattaatacatataagaatattgaatatttattcaaactGTAGTAGAATGTTATTTTCGTAGCATTTTCAagtatttttatagtatattttcaAGTGTTTGGTCTTTTTTTCATGATGGATAAAGGGAATGTAGAATATTTGAGAccgtttttatcattttatctcAGGAAACTGAATGTTATATTAGTAAAAAGATATTTGACGCTTAATAAATTCTTGATTAGAAAAACA

Function

symbol description
tm4sf4 Acts upstream of or within negative regulation of pancreatic A cell differentiation; negative regulation of type B pancreatic cell development; and pancreatic epsilon cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in intestinal bulb; intestine; liver; pancreas; and pancreatic bud. Orthologous to human TM4SF4 (transmembrane 4 L six family member 4).

NR:

description
PREDICTED: transmembrane 4 L6 family member 4-like

GO:

id name namespace
GO:2000227 negative regulation of pancreatic A cell differentiation biological_process
GO:0090104 pancreatic epsilon cell differentiation biological_process
GO:2000077 negative regulation of type B pancreatic cell development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24919 TM4SF4; transmembrane 4 L6 family member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222322.1 True 1167 mRNA 0.43 5 14506280 14508164

Neighbor

gene id symbol gene type direction distance location
tm4sf4 tm4sf4,LOC107572086,LOC107691056,LOC107753508,LOC107662946 coding upstream 14057 14489783 ~ 14492223 (+)
hps3 hps3 coding upstream 49283 14441534 ~ 14456997 (+)
elavl2 elavl2 coding upstream 113378 14379851 ~ 14392902 (+)
mark1 mark1,LOC107588439,LOC107702252,LOC107698240 coding upstream 154480 14314440 ~ 14351800 (+)
soul4 soul4,LOC107702255,LOC107588447,LOC107753484,LOC107697063 coding upstream 225642 14273885 ~ 14280638 (+)
pex6 pex6,LOC107690068,LOC107753488,LOC107662915,LOC104944420 coding downstream 53913 14562077 ~ 14575943 (+)
anos1b anos1b,LOC107588425,LOC107662924,LOC107707894,LOC107569245 coding downstream 207844 14716008 ~ 14771239 (+)
senp5 senp5,LOC107662925,LOC107706280,LOC107588423 coding downstream 263822 14771986 ~ 14779547 (+)
arhgef3 arhgef3,LOC107706277,LOC107588420,LOC107569252,LOC107705836 coding downstream 284632 14792796 ~ 14848187 (+)
tasora LOC107588417,LOC107662921,LOC107706275 coding downstream 349444 14857608 ~ 14884579 (+)
G152765 cp,LOC107732248,LOC107572087 non-coding upstream 37627 14465802 ~ 14468653 (+)
G152766 cp,LOC107736789,LOC107572087 non-coding upstream 42198 14462755 ~ 14464082 (+)
G152729 NA non-coding upstream 334025 14171944 ~ 14172255 (+)
G152728 NA non-coding upstream 334807 14171163 ~ 14171473 (+)
G152727 LOC107551379,LOC107657486 non-coding upstream 356786 14149176 ~ 14149494 (+)
G152787 wwtr1,LOC107753487,LOC107588432,LOC107662944,LOC107572084 non-coding downstream 40649 14548813 ~ 14584619 (+)
G152807 NA non-coding downstream 71310 14579474 ~ 14583369 (+)
G152809 LOC107662927,LOC107588426,LOC107707893 non-coding downstream 199539 14707703 ~ 14711539 (+)
G152844 NA non-coding downstream 206049 14714213 ~ 14714879 (+)
LOC122327819 NA non-coding downstream 299679 14807843 ~ 14809151 (+)
G152767 cp,LOC107572087,LOC107732248 other upstream 43620 14458149 ~ 14462660 (+)
ptk7a ptk7a,LOC107702250,LOC107732247,LOC107588446,LOC107550662,LOC107697061 other upstream 193144 14283892 ~ 14313136 (+)
kcnip2 kcnip2,LOC107714153,LOC107679051,LOC107551372 other upstream 427900 14071476 ~ 14078380 (+)
LOC122327219 cunh10orf76,zgc:63733,LOC107551381,LOC107714152,LOC107588454,LOC107657489 other upstream 447700 14040721 ~ 14058580 (+)
G152584 LOC107691164,LOC107602672,LOC107720370,LOC107559552,LOC107667897,LOC107736246,LOC107717652 other upstream 824333 13575738 ~ 13681947 (+)
G152808 LOC107588428,LOC107689379,LOC107573874,LOC107753503 other downstream 178340 14686504 ~ 14691808 (+)
sirt7 sirt7,LOC107667823,LOC107705833,LOC107569249,LOC107706268 other downstream 274218 14782382 ~ 14788693 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other downstream 687752 15195916 ~ 15219764 (+)
dennd1b dennd1b,LOC107712206,LOC107586420,LOC107664901,LOC107741568,LOC107556170 other downstream 1114929 15623093 ~ 15712086 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other downstream 1496400 16004564 ~ 16035615 (+)

Expression


Co-expression Network