gpr88 (gpr88,LOC107715102,LOC107669805,LOC107592712,LOC107588121,LOC107653578)


Basic Information

Item Value
gene id gpr88
gene name gpr88,LOC107715102,LOC107669805,LOC107592712,LOC107588121,LOC107653578
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8683005 ~ 8684494 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222329.1
AGCGTGGGCTCCTGTTGATCTCACGCCTctatcgctctctctctcacaaacacacgcgcgcacacacacacacacacacatataaacctCGATTCTCCACCGCAGCATTGCCAAAGGGAGCTGAGCTCTCTCTCACGCACATGTTCCTCTCGCAATGTGAGCTGCGATAAGATGAGATGACATTATCCGCGCATCATGCCAAACGACACGGACGTGCCGCTGTCGGCGTGCGCTCTGGGACGCGGCTCGCGCATCTCCCTGGCCACCGTCTACTCCTTCATGTGCGTTCTGGGAACCGTCCTCAACCTCCTGGTGATCTATTTGGTGGTGACGTTCAAGAAGCTCCGCACGGCCAGTAACGCGTTCATCGTCAACGGCTGCGTGGCGGATCTGCTGGTGTGTGCTTTCTGGATGCCCCACGAAGCCGTGGCCACCTCCACCGGGACTTTCCTGGTGATCGGCTACCAGGCGTTCAAAGAAGCGCTGCTGTTTCTGGGCATCACCGTGTCGCTGCTCTCCCACTCGCTCATTGCGGTCAACAGATACGTTTTGATCACCAAAACCCCTGCCGTGTATCAAAGCCTGTATCAGAAGAGGAACACAGAATGGATGATCGCAGGTTCGTGGTTGGTCTCCTTGGGCTCCTTGTTCCCGTGGATCACATCCTTTCGGTATCTGCCCGAAAGGTGCCGGGACGCTGAAGACGCTTCGTTGGCGAAGGGAACATCTGTGTCCGTTTTGTCAAGTCGGTTTGCGACCGGCACGCTTGCGTTTACCATCATCGGACAGACTTTGGTTGTGGTGTACTGCTACTTTAAAATCTTCCGCCGAGTGCAGATAAGCGTGAAAAGAGTCAGCATTTTGAATTTCCAAATCGTGAACAACCTTCCTTATTCGTTCCCCAGGAAGGACAAGCGACTCGGCTTTTACGTTCTCGCAGTctgctttattttcattctcaCGACCGAGCCCATTTTTTGGGTCCTCGTCGCGGGACTCTTCGCCCCGGTGTCCGTTGTGCTTTGGACGTCAACGTGGATTGTGTTCTGCACTATATTCGTGTCCAATCCCTTTCTGTACACTTGGAAGAACGAAGAGTTTCGGAAGTCCTTCAGGTCTGTGATGAGAGGAGACTTCTTGCGGGGCTCCACGGTTGGAGTCGAGCCCATCACCATCAATACTATTTCTCACATCTTCCCCAGACAAAACAGCCGCAGGGCATTTCTGGGTGAGATGAACTGAGCTAGAGCTGCGAAAAAGCTTACGACTTGTACTGTGGCCAGATTTCGCTCGTGCCTGTCCAAGATGCTTCTACAATCTGCTGGTGGTTTTTTTCAGTCACGATGAGCCGCATGTGATTTACAGTGTTTTGTAAAGATtttgtaacagttttttttgtgaagtggTTTTTGCACAATTGTGACGGCTTCACTGCCACTTTTTAAATGAGAGATGTCTATGAATGTTCAAATAAACGAGAAAAATCGCAA

Function

symbol description
gpr88 Orthologous to human GPR88 (G protein-coupled receptor 88).

NR:

description
probable G-protein coupled receptor 88

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08422 GPR88; G protein-coupled receptor 88

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222329.1 True 1490 mRNA 0.51 1 8683005 8684494

Neighbor

gene id symbol gene type direction distance location
vcam1b LOC107669833,LOC107715100,LOC107592710 coding downstream 1558 8673506 ~ 8681447 (-)
slc30a7 slc30a7,LOC107588064 coding downstream 16283 8651809 ~ 8666722 (-)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 coding downstream 65388 8614242 ~ 8617617 (-)
eps15l1a eps15l1,eps15l1a,LOC107757482 coding downstream 114063 8546952 ~ 8568942 (-)
mrpl54 LOC107665512,LOC107588072,LOC107715089,LOC107561894,LOC107757478,LOC107683181 coding downstream 214573 8467114 ~ 8468432 (-)
cdc14ab cdc14ab,LOC107669826,LOC107715101,LOC107653633,LOC107588060,LOC107592738 coding upstream 2597 8687091 ~ 8725380 (-)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding upstream 49664 8734158 ~ 8739243 (-)
trmt13 trmt13,LOC107588056,LOC107580953 coding upstream 67930 8752424 ~ 8757018 (-)
ttc39c ttc39c,LOC107653643,LOC107669847,LOC108429509,LOC106613856,LOC108270684 coding upstream 89371 8773865 ~ 8785783 (-)
lama3 LOC107669845,LOC107731542,LOC107592704 coding upstream 102264 8786758 ~ 8800742 (-)
G151029 NA non-coding downstream 183644 8499126 ~ 8499361 (-)
G151015 NA non-coding downstream 213753 8468471 ~ 8469252 (-)
G151016 LOC107715086 non-coding downstream 262265 8419634 ~ 8420740 (-)
G151020 NA non-coding downstream 270312 8412443 ~ 8412693 (-)
G151017 NA non-coding downstream 272876 8409316 ~ 8410129 (-)
G151086 NA non-coding upstream 122614 8807108 ~ 8808535 (-)
G151110 NA non-coding upstream 231407 8915901 ~ 8917143 (-)
G151111 NA non-coding upstream 264294 8948788 ~ 8949027 (-)
G151112 NA non-coding upstream 265122 8949616 ~ 8950059 (-)
G151122 NA non-coding upstream 460811 9145305 ~ 9147301 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 70261 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 389797 8286372 ~ 8293208 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other downstream 1064607 7609856 ~ 7618398 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 1627443 7020754 ~ 7055562 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other downstream 1769447 6906000 ~ 6913558 (-)
G151107 tal1,LOC107669848 other upstream 199627 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 329054 9013548 ~ 9171931 (-)
gpx4a gpx4a,LOC108429535 other upstream 814175 9498669 ~ 9503006 (-)
G151425 NA other upstream 1273317 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 1597528 10282022 ~ 10321663 (-)

Expression


Co-expression Network