LOC122327157 (LOC107575395)


Basic Information

Item Value
gene id LOC122327157
gene name LOC107575395
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13059089 ~ 13060473 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222351.1
CAGAGTTGCAGTAGATTCCTCTGTTAATGTTGTGTGGCGAGAAGCAGCTTCATCAAGCAAGAACCATGAAGATCATGCTGCTTCAGCTCTaTGTATTAACATGTTGTCAGTATGCAGTGACAGATCTAATAACTGATCTTGGATCAAATGTGACCATAAACTGTGATCTTGATGAAGATGAGGTTTATTGGATTTTACTGAAAACAGCAGATCCTCCAACAGTCATCCTACGTTCATTCTCAACACAAACAAAATCCCCTTTCTACCATAATAAAACCTTCAGAAAGAATTATTCAGTGCAGTCTAAACATCGTCTGGTTATTAATAATGTGACTGCTGAtgaattaggagtttattacTGTATGAACACAGAAACACCTCCAAAACTCAGCAACAGCACCAGAATATACTTCAAAGagccAGTTCAAATATCTAAGTGTCTGGATCATACACACTGGCAGATTATCATCATAATATCTGGTCTGATGAATGGGCTTCTGATCATGGTAGTGATCGGACTGGtaaaggtttttgttgttgGGAACAGAAGGTCTCCAGAACAACTTAACACTGATCTACAATTACAGTACGCTGAGGTGGATTTTTCCAAGCTGCGTAGAAATATTCGATCCAGCCAAATCAACAGCACCTATGCTGCTCTACAGCTGCCGAAGTCATGAACACATGAATATAATGGAAAAAGATCAGAGAaaatagtcaaataaaaaataaaaatcttattttaaaaagaatcgAAAAGGGTTAAAAAGTAAACAGCATCAGCTAAATGGCAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107575395

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222351.1 True 796 mRNA 0.37 5 13059089 13060473

Neighbor

gene id symbol gene type direction distance location
LOC122327164 LOC107569775 coding downstream 5514 13051332 ~ 13053575 (-)
LOC122327163 NA coding downstream 37044 13018008 ~ 13022045 (-)
LOC122327155 NA coding downstream 43423 13013881 ~ 13015666 (-)
LOC122327159 NA coding downstream 63990 12993212 ~ 12995099 (-)
cusr LOC107755356,LOC107659311,LOC107566031,LOC107566661,LOC107575609 coding downstream 81402 12969001 ~ 12977687 (-)
LOC122327152 LOC107655325 coding upstream 71033 13131506 ~ 13135336 (-)
LOC122327211 LOC107568072 coding upstream 75132 13135605 ~ 13153861 (-)
LOC122327158 LOC107659310,LOC107659300,LOC107655325 coding upstream 108475 13168948 ~ 13170194 (-)
LOC122327213 LOC107655323,LOC107566026 coding upstream 120202 13180675 ~ 13183947 (-)
LOC122327153 LOC107720344 coding upstream 127862 13188335 ~ 13191658 (-)
G152468 NA non-coding downstream 2531 13056318 ~ 13056558 (-)
G152466 NA non-coding downstream 3829 13054995 ~ 13055260 (-)
G152463 NA non-coding downstream 21490 13037379 ~ 13037599 (-)
G152454 NA non-coding downstream 56205 13002373 ~ 13002884 (-)
LOC122327774 NA non-coding downstream 105945 12944294 ~ 12953144 (-)
G152443 NA non-coding upstream 33632 13094105 ~ 13098776 (-)
G152472 NA non-coding upstream 40948 13101421 ~ 13167402 (-)
LOC122327170 NA non-coding upstream 45719 13106192 ~ 13109794 (-)
LOC122327171 NA non-coding upstream 61270 13121743 ~ 13124660 (-)
G152546 NA non-coding upstream 245971 13306444 ~ 13306916 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other downstream 144846 12906133 ~ 12914243 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 490362 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 695694 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 913514 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 1009551 12045469 ~ 12049538 (-)
si:dkey-222p3.1 NA other upstream 137561 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 319216 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 517328 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 764896 13825369 ~ 13829699 (-)
shoc2 shoc2,LOC107717661,LOC107720363,LOC107685511 other upstream 771011 13831484 ~ 13849120 (-)

Expression


Co-expression Network