LOC122327164 (LOC107569775)


Basic Information

Item Value
gene id LOC122327164
gene name LOC107569775
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13051332 ~ 13053575 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222357.1
aagcaAGGACCGCCTGTTACAGGAGAACGAAACGCCCAGCTATCCCTTCTTCCTGTTCTGTGTTGTCTTCTGTTCTCTGTCGTCCTGTGTGTGGTTACTAATTGTCTCCCCAGAAACGCCAGTTAGAAGCACACCCACCAGAGGATTACAGTCACAGAGAACCACACCCACCTGACACCTCACATTTAGCATCAACTGACACCAAACATCTACACCTCTGTCTTTCCTTGCTGTTGTCTGTTCTGCCTTGTTTGgttgttattttcttccagGTCTGTGTCAGTCACGTTCCCCCTCGCCGCACCAAAACATGTCTCACACAGCAGACAACGTTGGTCACTGGGAAGACCTGGAAACATGGCTAAGTGTTGCAACCAGCAGCCTCCTACCCAAGGCCGCGGAAACACTAAAGCATCAGACCCAGGAACAGCTGGATAACAACCTAACGAGCCTAATGAAACAGGACCCAAGCCAAGGCTACAACAACAAAGAGCTAGCAAAGATCACCTGCTCCCTAAGTCAGACCCTCATCGCTACCCTCAAACTGAGTGACAGGCACGCCGCCGATCTCCAACAGGAGCTGACATGCGCACAGCGACGCATCAAACAGCTGGAACTGGAGGCTCAGGAACGACAGGAAAGGCTGGATGAGGAGAGAAAGGACCCAGAGGAGATCACCACGCTCAAAGCCTTGCTAGCAGCTTCCACACAAGaggtgaaacaaaccaaaagagacTTTGACAATGCTGCCAACAACCTCCAGTACGCAGAACAGCTACTGGAGAAGGCAAAGACTGACATTAGAGACAAGGCCGGCAGAATCAAAGCCCTTGAGACTCACTTGAACCAGTCAAGGAATGAGATCAGCCGCCTAGAACAACAGCTGGACTACGTCAAAGAGGAATTCGACAGTGTCAAGGAGGAACTCAGACACGCCTACGACCTGCGCGCTGAGCCACTGAGGACACGGGAGGCACCAAAGTCACCCCTGCCAACCAGCCAAAGAGCATCACACGGCCTGGACCTAAAAGACCTCGACAAGATCGCCAGGAACATCGTCAAGTTCACCCCAGGTGTGCCAAGTAGTCCAGATGTTCCAACCTATCTGCAGGACGTCGAATTCCATCTGGAAGTAAGACCTCACGTCACTGATATAGATAGACTCTATTTACTGCGAGCAACATCAAGCCCTGTTGTACGCAGTTTCCTAGACCGGCAACCAGCCCAGACAAAGGCTGATTACCACCTGCTCCGAGAGGCTCTCATCAATGAATTTGATGACCCAGAGTCAGAACAAGGACTAGTAGCCGCCCTGGAGATCAGACAAGGCCGTCATGAGCCTTCACAAGCCTACTACAGCCGACTCAGGAGAGCATACTTCGGAACTCGCAACGAGCCCGAAATGGAACAGGACATGAACTTTAAGACTCTCTTCCTCAGGAACCTACATCCTGGGGTAAGCCACCATCTAGGCGTGCTTGCATGTCCGCGCACAATGACCATTCAGCAGCTGCGCGACTTAGCACACAAAGCCTACAGCAAACAGAAGATGGCTGCAGAGAAAGGCGCTAAAGCTCCGACGGTCCTCGACTTCAACACACAAAGTCACAGACTGCCTCTAGAGGGCGCCCAACATCAAAACAGCTTCAAGCCGTCAAGAAAAGAGTGGAACGCGTCCAACAGAGAGCAAGACTTCCACGCAGGTACCAGACCCAAGCAGAGAAACGGCCGCTGGGAGGGACCACGTGAACGACAGCGCTCGCCTGGACGCCACTGGGAAAAGTCATGGGACAGTTCAAGACCGCAGGAAGGTCAGTGGGAGAGATCGTGGAATCAGTCAACCTCCTTTAGAAACCAAAGGGGGAAGAGCTCCTGGGATGACAACGGAACCTCCATGGgaagagcacaaacacaccctgGAGCAACCAGCCCGAGGAATCAACGAAAGAACGCTCAAAGATTCCAAACTGACAGAGCTCAAACTGTATCCACACAAGAGCAAAAGACATCACCGTCTTTTAACTCCCAAGAACTGATGAAGAGTATGATGAAAGAGTTTTTCCAGCAAATGAAGGAAGATTGGAAGTGGGAAAAGAAAGAACAGCCGGATTCAGCCTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107569775

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222357.1 True 2119 mRNA 0.52 2 13051332 13053575

Neighbor

gene id symbol gene type direction distance location
LOC122327163 NA coding downstream 29287 13018008 ~ 13022045 (-)
LOC122327155 NA coding downstream 35666 13013881 ~ 13015666 (-)
LOC122327159 NA coding downstream 56233 12993212 ~ 12995099 (-)
cusr LOC107755356,LOC107659311,LOC107566031,LOC107566661,LOC107575609 coding downstream 73645 12969001 ~ 12977687 (-)
xpnpep1 xpnpep1,LOC107659312,LOC107755355,LOC107655345 coding downstream 85189 12956456 ~ 12966143 (-)
LOC122327157 LOC107575395 coding upstream 5514 13059089 ~ 13060473 (-)
LOC122327152 LOC107655325 coding upstream 77931 13131506 ~ 13135336 (-)
LOC122327211 LOC107568072 coding upstream 82030 13135605 ~ 13153861 (-)
LOC122327158 LOC107659310,LOC107659300,LOC107655325 coding upstream 115373 13168948 ~ 13170194 (-)
LOC122327213 LOC107655323,LOC107566026 coding upstream 127100 13180675 ~ 13183947 (-)
G152463 NA non-coding downstream 13733 13037379 ~ 13037599 (-)
G152454 NA non-coding downstream 48448 13002373 ~ 13002884 (-)
LOC122327774 NA non-coding downstream 98188 12944294 ~ 12953144 (-)
G152386 NA non-coding downstream 302892 12748222 ~ 12748440 (-)
G152363 NA non-coding downstream 367947 12683090 ~ 12683385 (-)
G152466 NA non-coding upstream 1420 13054995 ~ 13055260 (-)
G152468 NA non-coding upstream 2743 13056318 ~ 13056558 (-)
G152443 NA non-coding upstream 40530 13094105 ~ 13098776 (-)
G152472 NA non-coding upstream 47846 13101421 ~ 13167402 (-)
LOC122327170 NA non-coding upstream 52617 13106192 ~ 13109794 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other downstream 137089 12906133 ~ 12914243 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 482605 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 687937 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 905757 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 1001794 12045469 ~ 12049538 (-)
si:dkey-222p3.1 NA other upstream 144459 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 326114 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 524226 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 771794 13825369 ~ 13829699 (-)
shoc2 shoc2,LOC107717661,LOC107720363,LOC107685511 other upstream 777909 13831484 ~ 13849120 (-)

Expression


Co-expression Network