LOC122327174 (LOC107741537,LOC107564920,LOC107655355,LOC107715710)



Basic Information


Item Value
gene id LOC122327174
gene name LOC107741537,LOC107564920,LOC107655355,LOC107715710
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12082421 ~ 12084561 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043222359.1
aaatgttttctatttgcatgcatgttgaaatgtaatgatataatgataaaaaaataaaaataaaattgccgTTCATAGGTTTGGGGTACGtaaaaaatgcatctaaataaattaagatgttttcaaCAGTAGCATTAGTCAGTGTTACTATTAGTGGAGGACATGAACTTCCCGACATGTTAGCGTCCATCTGCCCACCCGTTTGTTTCCTGTTACGATCACGACCCAATAAAGGAGGCAACATGATCATGAATGGaaactctaaatatatattttggacgTGTGAGTAAATAGGTGTGAAACAAACTGTGGGATTTATCAAGATCGCAATGCATTAATCATCCGAAGAAATGTGCTGACTTCAGTGCTTTGGATGACCACACGTCATGTCACATGAAACGGTACTAATCTCTTTCCTCTTTTAATGTACGTGCAACAAAATAAAGATGTTACGTTTAGTTTCATAAAGGATGCTTCCATCCAGGTTTTAAAGGAGCAGAACCGACAACCTtccgtttatttttttttccaatccaAAACTTCGACCTCTGCTTCACCCCGGACAGCTATAAGTTCATGCAAGATCTTTCCAGACAAAAGCGGCTACTTTCATGGAAGTCTGACCCAATGTCCTGTCTACGAATGACATGACGGTTGATTCACGCCCACtcacacaataataaatagCAGCGCGGGTTTCTCTTacattacagtattacagtaaaaaaaaacgcatCGGTCTTCTAACCCATCCATGGCTCTTCAGCTCATCGGTTATATTCTGTCCATCGCTGGTTTGTGTGGCCTCATTATAGGCACATTTACCAATGAATGGAAAGTCCTTGGACACGAAAATGACAAGACTGTGATTCTGGACAAATACGTAGGACTGTGGATGGAGTGCTCCGTGGACAGTTCGTCTCACATGCGCTGCACAAGCTACAGCTCTCTCCTTCATCAGATCTTTGAGATCCAGGTGAGCCGAGCCGTCATGATCTCCAGCATCCTCTTGTCAAGCTTCGCCGCGCTGGTGGCCATTTCCGGTCTCAGATGCACGAGGTGTTTAGAAGAGAACAAGAAGTCGAAGGACAGAGCCGCCTTCCTGGGAGGAATGCTCTCTGTGTGCGCCGGACTTCTCGCTTTGGGCATAACCAGCTGGTTTATATACGGAGTGGTTGAGAGTTTCTTTCAGAATGACACCGAGACGGACAAGTTTGTGGTCGGCAGGTCTCTGATCGGTGCGTTTGTCGCATCTCTGTTCTGTTTATTCGGGGGCATTCTCTTATGCGCCTGCAGCGTGACGCATCTACAATCCCCAAAACCTCTCAGCAAGCACCCGGCCTccaagaatcctgaaaaagagTATGTTTAATGAATCCCGAGGGACCGCCTGAAGAGCTAAACTTCGTTAAATTGCATGCGTTGTGTTTATAAAGAAGTAGTCGGCAATTAAGCATTTTATAGTAGTTCAAAAAAAACCTACACATCATCTCTAATtatatgttgtttgttttactaaCTGACATCCATGTGTGCGATTTAACAGCTTTTATGATGTTTGTGAGTCAATTTAGCTTCTAGAAAACACGAAGGCTGGGATTGCTTCATAGTTGACCACAGAGGAAGATTATGTCATATCCCAGTCATAGCTTTACAGTAAATGTGAGgacatttttactatattagCGTATTTTTGCTGTCATAAGCATATTTCAAGCTGTGATGTAGTgcagaatatttattatattatattataaatacttaCGA

Function


NR:

description
PREDICTED: claudin-1-like isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043222359.1 True 1767 mRNA 0.41 4 12082421 12084561

Neighbor


gene id symbol gene type direction distance location
ccdc50a ccdc50,si:ch73-6k16.1,LOC107560694 coding upstream 4550 12056820 ~ 12077871 (+)
uchl5 uchl5,LOC107664699,LOC107655412 coding upstream 55669 12022117 ~ 12026752 (+)
glrx2 glrx2,LOC107664942,LOC107560687 coding upstream 60785 12019242 ~ 12021636 (+)
b3galt2 b3galt2,LOC107741544,LOC107715722,LOC107564918,LOC107664691,LOC107560698,LOC107655413 coding upstream 78565 11997220 ~ 12003856 (+)
LOC122328196 mrpl14,LOC107676385 coding upstream 289256 11792550 ~ 11793165 (+)
p3h2 p3h2,LOC107664742,LOC107564922,LOC107715694 coding downstream 2604 12087165 ~ 12122997 (+)
LOC122327103 NA coding downstream 40932 12125493 ~ 12130315 (+)
wdr47b wdr47b,wdr47,LOC107741541,LOC107664763,LOC107655405,LOC107715726,LOC107560691,LOC107564929 coding downstream 47407 12131968 ~ 12144436 (+)
clcc1 LOC107664769,LOC107741532,LOC107564923,LOC107655407 coding downstream 61799 12146360 ~ 12152024 (+)
mcoln2 mcoln2,LOC107741530,LOC107715711,LOC107655403,LOC107664794,LOC107563519,LOC107577489 coding downstream 69961 12154522 ~ 12164257 (+)
G151999 NA non-coding upstream 34156 12045852 ~ 12048265 (+)
G151976 NA non-coding upstream 75839 12006268 ~ 12006582 (+)
G151972 NA non-coding upstream 89621 11992590 ~ 11992800 (+)
G151936 NA non-coding upstream 214880 11867082 ~ 11867541 (+)
LOC122327899 NA non-coding upstream 295710 11777483 ~ 11786711 (+)
G152015 LOC107570371,LOC107664873 non-coding downstream 131886 12216447 ~ 12216846 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding downstream 154547 12239108 ~ 12239444 (+)
G151983 NA non-coding downstream 168280 12252841 ~ 12253286 (+)
G152028 NA non-coding downstream 221993 12306554 ~ 12331845 (+)
G152068 NA non-coding downstream 342195 12426756 ~ 12426972 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other upstream 247287 11826565 ~ 11835134 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other upstream 257214 11822934 ~ 11825207 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other upstream 754191 11318107 ~ 11328230 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 1087477 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 1160390 10918089 ~ 10922031 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 91126 12175687 ~ 12189006 (+)
G152032 NA other downstream 208839 12293400 ~ 12294717 (+)
G152043 LOC107741571 other downstream 260645 12345206 ~ 12345750 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other downstream 324745 12409306 ~ 12423922 (+)
LOC122327156 NA other downstream 982853 13067414 ~ 13098756 (+)

Expression



Co-expression Network