clcc1 (LOC107664769,LOC107741532,LOC107564923,LOC107655407)


Basic Information

Item Value
gene id clcc1
gene name LOC107664769,LOC107741532,LOC107564923,LOC107655407
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12146360 ~ 12152024 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222373.1
CTTTCGACGAAGAAACCACGACGAATGACAGCACATAGATGTCACAACATAGAGCCCGTATTTGACGTTTCGAACAATTACGCTTATTACTCTAGGTGTGTTTTTCTATGTGGCAAGCGCATGACAGCTCTCTTCCAACATTGGAGATTATGAAGGCGCCGCGCCGTCCGTCGTTTGGattctgctgtttgtttgtttgttgcagTCTGTTTGTTATCGCGAACGCTAACGTCCACGcggaagatgaagatgaagaagatgaaTGGATCGACCCATATGACATGCTCAACTACGACCCACTGACGCAGCGCATGAGAAAACCCAAGGAGtCCGCCAGTTACCAAAATGTGCCAACCAAGAGGAGGGAATTCAGCTCTGAGTCCTGTGAAGCCCAGCGGTGTCCTGATGTGTCCGAGTGCGCCACTAAACTAGAGAGTTTGCAAAAAGAGtttgatgGATACAAAAAGAAGGGGACCGCCGCCTCGGTAAAACCAGTATGTCTTCCGGTATTCAAGCGTTTTCTCACCAAGCTCCTTAAAGAAACTTCAAAACTCGGTCTGCCTGACGATGGACAGGCGTCCGTGCATTATGACGCTGATGTGAAGCTGTCCAAGCAGTCGCTGGCGGAGATCCAGAAGCTTCTGAATGAAGAGAACGACTGGACCACTGGAGCCATGGACGAGGCTCTCAGTCAGATCCTGGTCAGATTCAAACTCCACGACCGCGAGGCCTGGAAGTGGCGCTCCGAAGATACGTTTTATGTAGATGCTGATACTGCCCTGAAGGTTTCTTTGATCGTTCTCATTATTGTAGCTGTAATCTGCACCGAGCTCTGGTCCGTGGTCTCCTGGTTTGTCCAGTTCTGGAGAATGTTtgctgtttgcttttttattagtttgatcTGGAACTGGTTCCATCTTTACATGGTTGCCTTTGCAGAACACAAGAAGAACATCGTGGAGGTGGAGAGCTTCAACGGGAAATGCACTGGACTGAAACAGCTGGACTGGAAAGACAGTTTATCAGAGTGGTACAGACGCACATGGACTCTTCAAGATGACCCTTGCAAAAAGTACTACGAGGTCCTTGTGGTGAACCCCATTTTGATTGTGCCTCCGACGAGGGCTCTCACGGTCACCATAACCAGTTTCATCACGGATCCCTTGAAGCAGATCGGGCAGGGAATTAGCGAGTTCCTCAGAGCCTTGCTGAAGGACCTTCCGGTCACTCTTCAGTTACCTGTGCTGCTTATCATTGCACTCGCCATCCTTGTGTTCATGTACGGGGGCGCTCAAGCGGCTATACATCAAGCCGTCCGCTTTCCCCGGCTCGGTTGGCGACGGGACCAGCCGCCTCCTGCGGTGGGACAGCACCAGGCTCCTCGAATAAGGGAGCGTGAGGAAGCTTGGGATAGAGGCGACGCTCCGCAACCTCTACAGGACAATAGAAACGGAGGAAATCAAGCGGGAAACCAAGGTGGCCTCAGGGCGGGAGATGCTTATGCCCCACAAAACAGGCAGGAGGACAGAAGCATGGAAGTCCGACAGGAGTTTAGCAGCGTTCCCAGACAGACCCAGAGGGTAGAGACTGTGCGCGCTACAGGCAACATGTTCAGCGACGATGAGACCGATCAACATCGGACGGAGGAGGTGGCTCCTGATACGAAGGAAAAGGCAGAGCCTGAAGGAAAGGCtgaagaaaaggagaaaaacgcTCCTACGGAGGACAAAAAGGAGCAAAAAGATACAGACAGGAGTGAGCCTGTAACCGGTGTGCCCTCTGCTCAAACAGATGTGAAAACACTTGGAGCGAATCAAGAGAATCAGggaGTTTCAGCAGATCTTTCTGACGAAGAAGGCTATTCAAGCTTTAAAACTCCGGTTCAAGaaacactgcattaaaatgGCCTCTGAACTTTTTTGTGCCAACACAGTTTTTGTGACATTgacttttaattacattttgggaatacttttttttttttttctcaaatttaaatatatttttgctactttctctttatatattcagtttaattttaagtaaatctCCTGAAGTACCATTCATGTGTTTATAAAGAGACGATGAAGGGTGAATGAGGTTTGCTTACATCTTTGTCTCCATCAGTTGTATTTTTTGAACGTTATACTGACACCTACTGCCCAGGATGTGTGATGTTTTGCTGCTACTTTACACAAAGATGGTAGGGATGCGTAGGGACAAacattttgtcagtaaagccggtAATCTCCTGTAAATGCCATctttactgacaaaatgctTATTACGTATCATCCGATAATTAGCGGTGCATCCCTaaaaaatggtttcttttttctctcatcattattttttcatctaatccatcaggtttttttttttttttttttgagcatgtTGTAGGGTCTTTATTCTGTTAATGGCTTCTTGCTAAGCTTATTTTTGCTAGTATTTCTAATTATACACTTTGGATCGGTTAAATAATGTCGACTCAGGCTGTATTATTGTGtctgtaatgtatttttgttatattgtttgatttgcttgttttgtttaggtgtatttttgtgattatgatttaaaaaaaaagtgccttaAGCACTGGGTGAAAGCacagtataaataaaatctaattaatttgatttattattattaattttaataataataataagttttatCGACACAGCTGGAGATCGTGTGATCTCAACATGAGCCgttttatttggaataaaaaaaaatatttgacggTGAA

Function

NR:

description
chloride channel CLIC-like protein 1

GO: NA

KEGG:

id description
K22188 CLCC1; chloride channel CLIC-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222373.1 True 2755 mRNA 0.44 11 12146360 12152024

Neighbor

gene id symbol gene type direction distance location
wdr47b wdr47b,wdr47,LOC107741541,LOC107664763,LOC107655405,LOC107715726,LOC107560691,LOC107564929 coding upstream 1924 12131968 ~ 12144436 (+)
LOC122327103 NA coding upstream 16045 12125493 ~ 12130315 (+)
p3h2 p3h2,LOC107664742,LOC107564922,LOC107715694 coding upstream 23363 12087165 ~ 12122997 (+)
LOC122327174 LOC107741537,LOC107564920,LOC107655355,LOC107715710 coding upstream 61799 12082421 ~ 12084561 (+)
ccdc50a ccdc50,si:ch73-6k16.1,LOC107560694 coding upstream 68489 12056820 ~ 12077871 (+)
mcoln2 mcoln2,LOC107741530,LOC107715711,LOC107655403,LOC107664794,LOC107563519,LOC107577489 coding downstream 2498 12154522 ~ 12164257 (+)
lpar3 lpar3,LOC107564924,LOC107664802,LOC107655404,LOC107563520,LOC107715712 coding downstream 12358 12164382 ~ 12173298 (+)
dzank1 dzank1,LOC107563543,LOC107715701 coding downstream 212311 12364335 ~ 12373157 (+)
rrbp1b LOC107659340,LOC107741526,LOC107715739,LOC107655391 coding downstream 233966 12385990 ~ 12397446 (+)
aars2 aars2,LOC107715740,LOC107655390,LOC107575073 coding downstream 246296 12398320 ~ 12408232 (+)
G151999 NA non-coding upstream 98095 12045852 ~ 12048265 (+)
G151976 NA non-coding upstream 139778 12006268 ~ 12006582 (+)
G151972 NA non-coding upstream 153560 11992590 ~ 11992800 (+)
G151936 NA non-coding upstream 278819 11867082 ~ 11867541 (+)
LOC122327899 NA non-coding upstream 359649 11777483 ~ 11786711 (+)
G152015 LOC107570371,LOC107664873 non-coding downstream 64423 12216447 ~ 12216846 (+)
G152016 LOC107733205,LOC107563524,LOC107655402,LOC107715731 non-coding downstream 87084 12239108 ~ 12239444 (+)
G151983 NA non-coding downstream 100817 12252841 ~ 12253286 (+)
G152028 NA non-coding downstream 154530 12306554 ~ 12331845 (+)
G152068 NA non-coding downstream 274732 12426756 ~ 12426972 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other upstream 311226 11826565 ~ 11835134 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other upstream 321153 11822934 ~ 11825207 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other upstream 818130 11318107 ~ 11328230 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 1151416 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 1224329 10918089 ~ 10922031 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 23663 12175687 ~ 12189006 (+)
G152032 NA other downstream 141376 12293400 ~ 12294717 (+)
G152043 LOC107741571 other downstream 193182 12345206 ~ 12345750 (+)
G152065 LOC107716432,LOC107655331,LOC107575070,LOC107715704,LOC107570368,LOC107755334,LOC107659303 other downstream 257282 12409306 ~ 12423922 (+)
LOC122327156 NA other downstream 915390 13067414 ~ 13098756 (+)

Expression


Co-expression Network