trmt13 (trmt13,LOC107588056,LOC107580953)


Basic Information

Item Value
gene id trmt13
gene name trmt13,LOC107588056,LOC107580953
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8752424 ~ 8757018 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222410.1
tatatatatataaaaataatatagtttcaaaatatatttatatacacacagcacacattatttaaataaaaacttttattttgcatgctgtCATAAAGATTGATTCATTggtaacattttgtcatttaaagctAACTTAATGTTCTTCCTCTGagtttaggctttttttttgtctccagTATGAGCTCCACATCTTCACACGATACGAGCAATAAAAGCCTATGAAAGATGCTCAacgataaacaaaaaaacaaacaaacaaacactgactATCAATTTTAACAGGCCAGGCTTCACAGGGTTAATACGTCGGCCTCTGAAGCAacaaagcaggaaaaaaaagtcttggTATGCAGATTAACATCGTCCCTTTTAACGCAATAACCGTTTGGTGAACCATAAAGCTTTCTTTGTGCTGAATGTAGGTCAGTACGCTAAGAGAAACGTGTAATATATACGTTTAAGAGACAAAACACAGCTGAacggaataaaataaaaaggttaaatattAAACCGCGTGCGTTAAATCCCAGAAGCTGAGGTAACCGTCGTTTATTGCCTGGCAAGAACTAGGTTATGAAAGCTTTAGTTTGCCGATAACGGCTGTCGAAGCTCGAGGGAGTTTATCGAGATTAACTCGTACGGCGAACAACCCGTCACGTGACTTTCTGGACCTCTTAACACTTGATGTACAAACTTGCCTGATCAAAACATCACTCGATCAACCGGTCTTCATCTGTTATCAAAGACAGTTTCACTGACTATTCACTGAATCCTTCGGTTATTAGACCTTCACCAGGATGTGGGTTTATCACTTAATTAGcGCTGTTGTTTATAgctcttattttgaaatggcTCGCGGAAGTTCGTTGGTCGCGTCATCAGTATGGAGGAGTCTGTGGCGGACGGCGTGTCGGCGCCTTTACCCGGGCGATGTGCTTTTTATgtagcaaaaaagaaaagatactGCAAGATGCTTGTTGGACGTGGGAAGACCTTATGTGGAGAACACGCAAACGCTGGTGAAGAGAGTGAGAAAAAACGAATACCCTGTCCTTTGGACCCGAAACACACTGTATTTGAAGATAATTTGGCTAAACACCTGAAGAAATGTAACTCTAAGGAGAAACCAAAacctatttattataTGAAAGACATCAATGCAGGTTCTGGAAGTGAGGATGAAACCAAAGAGGAGATAACCATCGCTGAACGATCTAAAGAGGAACTGGATGAGCTAATCATCAAACTCAAAACTGCATTGAAAGGTCTAAATACCAAACTTATTGAAAACTCACTGTCACATTCTGCTCTACACGAGCCTCTAAATGACCCAAAGAATGGAGATTCTGCCTTTAAACACCTCAAGCAACAGGCCTCGATTCTTGGAAACATGGAGCTTTTGGAACTGCTCAAACCAAATAGATGCTACATAGAGTTTGGAGCAGGGAAGGGAAAACTGTCCCACTGGATTCACATTGCTCTTAAAGAAGCTGAAAATGTCCATTTTTTACTTGTGGAAAGGTCCAGTACTCGCTTTAAGGTAGATGGCAAGCACAAAAATGCAGACTCAACTTTTGATAGGCTTCAGGTTGATATTCAGCACCTTGATTTACGGAAGGCCCCTCTTTTGAGAGAAAAAGGACTTCCTGTTATTGGTGTTGGGAAGCACCTGTGTGGTGCAGCAACTGATCTAGCCCTTCGTTGTTTATTCGAGCACAACTGCTCCGAGGAAGATGATGAACCTCCAACCAAGCGTGTAAAACTCCATCAGAATGAGGGTGCTTGTGGTGATATTAAGCCTGCTTCCTCAACCAAAGGCCGGGAAACTGGTAAAAAGCTCATAGTGTCAGGACTGGCTATTGCGCTTTGCTGCCACCACCGCTGCGACTGGAGACACTATGTGGGAAAAGAGTTCTTCAGGCAGAAAGGTCTTGGACCGGAAGAGTTTGCTGCCTTTCAGCGCATGTCGAGCTGGGCCACATGTGGGATGAGAAAATTTGCCTCTAAGATAAGAGAAAAACCAAGTGAACTCAAAACGGATGAAGAGGAAGAGCATGAGATGAGCGAAAAAGCTTTACCTGATACCCTCAGtggTTTGATGTCAGTTGAAGATCGGGAACAGATCGGATGGCTTTGTAAACGTCTGATTGACCATGGCAGATTGTATTACCTCCAGAAAAAAGGCTTTGAAACCAGCCTGAAATATTACACAAGCAGAGACGTTTCGTTGGAGAATGTGTTACTAACTGCTGTTcccgcagccaatcagaatagaGATGAATCTCAACAGACTTCTTAAAAACAAGCACAGGTGCAGGACACGTatgcttcattttatttaatcaatgtttatggatttcttttttttactttagcttAACCATAAACATTAGTTAGAGCATACTAGAAGCAGCAATTTCAACAAACAGCAAAGGCGACAAGACATTTAAAAGGGCGAGAAGTGCTCTTCGCAGAACTTGGCATGAAGGACCAGAGGATCAAGCCTGAAGACGGACGAGCAGACAGAAGCCAGCATGCAAGTCACATAGATGATGCCGTCTCTGACACGCCATCCAACGTCACATTTAGCACTGACGTAAACGTTTGGGATCCTGCAAGAGACATTTAACACAGAAGCTGGTCATTAAGAGGCCTTTGGGACTTTAATTtcttgtctgttttatttatgcacCATTTTATAATAAAGCTCTGCTACCAGGTTTGCACGCAATACA
>XM_043222411.1
atatatatatatatataaaaataatatagtttcaaaatatatttatatacacacagcacacattatttaaataaaaacttttattttgcatgctgtCATAAAGATTGATTCATTggtaacattttgtcatttaaagctAACTTAATGTTCTTCCTCTGagtttaggctttttttttgtctccagTATGAGCTCCACATCTTCACACGATACGAGCAATAAAAGCCTATGAAAGATGCTCAacgataaacaaaaaaacaaacaaacaaacactgactATCAATTTTAACAGGCCAGGCTTCACAGGGTTAATACGTCGGCCTCTGAAGCAacaaagcaggaaaaaaaagtcttggTATGCAGATTAACATCGTCCCTTTTAACGCAATAACCGTTTGGTGAACCATAAAGCTTTCTTTGTGCTGAATGTAGGTCAGTACGCTAAGAGAAACGTGTAATATATACGTTTAAGAGACAAAACACAGCTGAacggaataaaataaaaaggttaaatattAAACCGCGTGCGTTAAATCCCAGAAGCTGAGGTAACCGTCGTTTATTGCCTGGCAAGAACTAGGTTATGAAAGCTTTAGTTTGCCGATAACGGCTGTCGAAGCTCGAGGGAGTTTATCGAGATTAACTCGTACGGCGAACAACCCGTCACGTGACTTTCTGGACCTCTTAACACTTGATGTACAAACTTGCCTGATCAAAACATCACTCGATCAACCGGTCTTCATCTGTTATCAAAGACAGTTTCACTGACTATTCACTGAATCCTTCGGTTATTAGACCTTCACCAGGATGTGGGTTTATCACTTAATTAGcGCTGTTGTTTATAgctcttattttgaaatggcTCGCGGAAGTTCGTTGGTCGCGTCATCAGTATGGAGGAGTCTGTGGCGGACGGCGTGTCGGCGCCTTTACCCGGGCGATGTGCTTTTTATgtagcaaaaaagaaaagatactGCAAGATGCTTGTTGGACGTGGGAAGACCTTATGTGGAGAACACGCAAACGCTGGTGAAGAGAGTGAGAAAAAACGAATACCCTGTCCTTTGGACCCGAAACACACTGTATTTGAAGATAATTTGGCTAAACACCTGAAGAAATGTAACTCTAAGGAGAAACCAAAacctatttattataTGAAAGACATCAATGCAGGTTCTGGAAGTGAGGATGAAACCAAAGAGGAGATAACCATCGCTGAACGATCTAAAGAGGAACTGGATGAGCTAATCATCAAACTCAAAACTGCATTGAAAGGTCTAAATACCAAACTTATTGAAAACTCACTGTCACATTCTGCTCTACACGAGCCTCTAAATGACCCAAAGAATGGAGATTCTGCCTTTAAACACCTCAAGCAACAGGCCTCGATTCTTGGAAACATGGAGCTTTTGGAACTGCTCAAACCAAATAGATGCTACATAGAGTTTGGAGCAGGGAAGGGAAAACTGTCCCACTGGATTCACATTGCTCTTAAAGAAGCTGAAAATGTCCATTTTTTACTTGTGGAAAGGTCCAGTACTCGCTTTAAGGTAGATGGCAAGCACAAAAATGCAGACTCAACTTTTGATAGGCTTCAGGTTGATATTCAGCACCTTGATTTACGGAAGGCCCCTCTTTTGAGAGAAAAAGGACTTCCTGTTATTGGTGTTGGGAAGCACCTGTGTGGTGCAGCAACTGATCTAGCCCTTCGTTGTTTATTCGAGCACAACTGCTCCGAGGAAGATGATGAACCTCCAACCAAGCGTGTAAAACTCCATCAGAATGAGGGTGCTTGTGGTGATATTAAGCCTGCTTCCTCAACCAAAGGCCGGGAAACTGGTAAAAAGCTCATAGTGTCAGGACTGGCTATTGCGCTTTGCTGCCACCACCGCTGCGACTGGAGACACTATGTGGGAAAAGAGTTCTTCAGGCAGAAAGGTCTTGGACCGGAAGAGTTTGCTGCCTTTCAGCGCATGTCGAGCTGGGCCACATGTGGGATGAGAAAATTTGCCTCTAAGATAAGAGAAAAACCAAGTGAACTCAAAACGGATGAAGAGGAAGAGCATGAGATGAGCGAAAAAGCTTTACCTGATACCCTCATTTGATGTCAGTTGAAGATCGGGAACAGATCGGATGGCTTTGTAAACGTCTGATTGACCATGGCAGATTGTATTACCTCCAGAAAAAAGGCTTTGAAACCAGCCTGAAATATTACACAAGCAGAGACGTTTCGTT

Function

symbol description
trmt13 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT13 (tRNA methyltransferase 13 homolog).

NR:

description
tRNA:m(4)X modification enzyme TRM13 homolog

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K15446 TRM13, CCDC76; tRNA:m4X modification enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222410.1 True 2738 mRNA 0.41 12 8752424 8757013
XM_043222411.1 False 2233 mRNA 0.41 12 8752930 8757018

Neighbor

gene id symbol gene type direction distance location
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding downstream 13181 8734158 ~ 8739243 (-)
cdc14ab cdc14ab,LOC107669826,LOC107715101,LOC107653633,LOC107588060,LOC107592738 coding downstream 27044 8687091 ~ 8725380 (-)
gpr88 gpr88,LOC107715102,LOC107669805,LOC107592712,LOC107588121,LOC107653578 coding downstream 67930 8683005 ~ 8684494 (-)
vcam1b LOC107669833,LOC107715100,LOC107592710 coding downstream 70977 8673506 ~ 8681447 (-)
slc30a7 slc30a7,LOC107588064 coding downstream 85702 8651809 ~ 8666722 (-)
ttc39c ttc39c,LOC107653643,LOC107669847,LOC108429509,LOC106613856,LOC108270684 coding upstream 16847 8773865 ~ 8785783 (-)
lama3 LOC107669845,LOC107731542,LOC107592704 coding upstream 29740 8786758 ~ 8800742 (-)
cts12 cts12,LOC107592744,LOC107669798,LOC107588120,LOC107653645,LOC107731531,LOC107715055 coding upstream 44744 8801762 ~ 8805647 (-)
plekhb2 plekhb2,LOC107731538,LOC107669828,LOC107715113,LOC107653647 coding upstream 62833 8819851 ~ 8825290 (-)
stx6 stx6,LOC107669815,LOC107731540,LOC107715114,LOC107653648 coding upstream 92979 8849997 ~ 8856455 (-)
G151029 NA non-coding downstream 253063 8499126 ~ 8499361 (-)
G151015 NA non-coding downstream 283172 8468471 ~ 8469252 (-)
G151016 LOC107715086 non-coding downstream 331684 8419634 ~ 8420740 (-)
G151020 NA non-coding downstream 339731 8412443 ~ 8412693 (-)
G151017 NA non-coding downstream 342295 8409316 ~ 8410129 (-)
G151086 NA non-coding upstream 50090 8807108 ~ 8808535 (-)
G151110 NA non-coding upstream 158883 8915901 ~ 8917143 (-)
G151111 NA non-coding upstream 191770 8948788 ~ 8949027 (-)
G151112 NA non-coding upstream 192598 8949616 ~ 8950059 (-)
G151122 NA non-coding upstream 388287 9145305 ~ 9147301 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 139680 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 459216 8286372 ~ 8293208 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other downstream 1134026 7609856 ~ 7618398 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 1696862 7020754 ~ 7055562 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other downstream 1838866 6906000 ~ 6913558 (-)
G151107 tal1,LOC107669848 other upstream 127103 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 256530 9013548 ~ 9171931 (-)
gpx4a gpx4a,LOC108429535 other upstream 741651 9498669 ~ 9503006 (-)
G151425 NA other upstream 1200793 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 1525004 10282022 ~ 10321663 (-)

Expression


Co-expression Network