LOC122327211 (LOC107568072)


Basic Information

Item Value
gene id LOC122327211
gene name LOC107568072
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13135605 ~ 13153861 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222427.1
GtttgacatttataatttttttttgtctgattgtCTAGCAATCTCTCGATATCCCCATAAATCGTAGTAATCATGAGAACAGATACATGAAAaattattagtttgtttatCTCCTCTTCCgctacatttactttttaaactccATGACTGCATGACGACTTCCGCTACCCGGAAACGGTAACAGGGCTTGCTTTTGGTTtcgtagtagtagtagtagtagtagtgtcGTGGTAAATAATATACAAACTAAATTAATTGTATCGGGGCAATATGATCATCGGGCGCTGTTTCATCTGTCTGTTTGCAGTGCTGATACATAAAGTGTCTCTGCAGGTCACAGTAAAGGCTGTTATCGGTGGTTCTGTTGTTCTGCCGTGTTCTACAACTGAATGTGATCTTAAACTACAAGAAATTGATGTGTTTTGGAGAGACAAAGATGGTGAGACtctatataatttaattaaaggtACAGATTCTTTGGACACACAGGACCCACGATATAATGGCAGAGCAAAAAGTTTCCAAAAGGAGTATGAGAGAGGAAACTTCTCCATCAAACTCAACAATCTCAGTCACGCTGATGCAGGAACATTCATCTGCTACATCACACCCTTAGATGAACAGAAGACTGTAGAGCTGATCATTCATGAGCTAGAGAAAATTCAACATCTTAACTGCTGTGTGAAGAGAAGTATTTTATTCACAACAACATCATGAAGATCATTCAGCTCCAGCTCTaTGTATTAATGTGGTGTCACGCGGCAGTGGCAGATCTAATAACTGATCTGGGATCAAATGTGATCATAAACTGTGATCTTGATGAAAATGAGGTTTATTGGATTTTACTGAAAACAGCAGATCCTCCAACAGTCATCCTACAATCATTCTCAACATCATCATTTTACCCTAATAAATCATTCAGAAAGAAATATTCAGTGCAGTTTAAACATCGTCtggttattaataatataactgCTGAtgaattaggagtttattacTGTATGTACACACGGACACCTCCAAAACTCAGCAACAGCACCAGAATATACTTCGaaCCAACTCCATCTAACCAGCTGACTGTTGTAACCGAGTGTCACAATCATACAACTACTGAGTATATTGATCAGAATCAAACACAATGGAAGATTATTATCGTCATATCTGGACTGATGAATGGCCTTCTAGTTCTTGTGGTGGTTGGACTGGTAAACGCTTTTGTTGTTGAAAGCAAAAGGTCTGCAGAACAATCAGAACAAATGAACATCGATCTACAGCACATGCAAGTTGTGGAACCATATCAGGACCAGTTACATTACACCGTGGTGAACTTTTCCGAGCTGCCGAAGTCATTTTTTCGTGATGTTCAACTATGGTGCTTCATCTGTGTTATAGCAGGGCTGGTAAACAAAGtgTGTCTGCAGGTCACAGGTTTCATAGAAGGTTATGTTGTTTTgccatgttttttaaatgaatatgacTTTAAACCTCAAGACATCAATGTTCTTtggagagacaaacacagtggATCTGTTTATGATTTAATTCAAGGACAAGAGTCGCTAAAGTCACAGAACCCAAGGTATAAGAACAGGGCACAAACTTTCCCAAAGGAGTATAAGAGAGGAAACTTCTCCATCAAGCTCAACAATCTCACTCACGATGATGCAGGAACGTACATCTGCTTCATCACGCACTTTACTTTTTCTAAACAGGAGACTGTACAGCTGATCATTAATGAATCAACAGTTACAACTGGAAACCAATCTAcggaagaagaaaacaaattacCAGAAACACAGTTCGATCGGAGATTATTAATATGTGTTTGCACTCTTGTACTTTTAGTAATTCTCATGTCTATAATAATCGGTTTTATACTTTACTGGAAGAGAAGAACTCAGCTGCATCTGAACAGCCAGTATCGTTCTGCCAACATTGAAACGAATGAATGTTCATTAGAATTGTGAGTGACGTGTATATATATCTGCCGAATCTCTTTTTATACTccatcaatggatggagccagggggcacgtttttgagatcttggcttctggccaccaaactggcttagcatgctattacttagggaacgcataaaaaattactctttttgagtctattgaggaaatg

Function

NR:

description
PREDICTED: uncharacterized protein LOC107568072

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222427.1 True 2132 mRNA 0.38 11 13135605 13153861

Neighbor

gene id symbol gene type direction distance location
LOC122327152 LOC107655325 coding downstream 269 13131506 ~ 13135336 (-)
LOC122327157 LOC107575395 coding downstream 75132 13059089 ~ 13060473 (-)
LOC122327164 LOC107569775 coding downstream 82030 13051332 ~ 13053575 (-)
LOC122327163 NA coding downstream 113560 13018008 ~ 13022045 (-)
LOC122327155 NA coding downstream 119939 13013881 ~ 13015666 (-)
LOC122327158 LOC107659310,LOC107659300,LOC107655325 coding upstream 15087 13168948 ~ 13170194 (-)
LOC122327213 LOC107655323,LOC107566026 coding upstream 26814 13180675 ~ 13183947 (-)
LOC122327153 LOC107720344 coding upstream 34474 13188335 ~ 13191658 (-)
LOC122327216 LOC107720342,LOC107667884,LOC107571637 coding upstream 190295 13344156 ~ 13352425 (-)
LOC122327105 LOC107571641,LOC107667894,LOC107720378 coding upstream 198664 13352525 ~ 13362266 (-)
LOC122327171 NA non-coding downstream 10945 13121743 ~ 13124660 (-)
LOC122327170 NA non-coding downstream 25811 13106192 ~ 13109794 (-)
G152443 NA non-coding downstream 36829 13094105 ~ 13098776 (-)
G152468 NA non-coding downstream 79047 13056318 ~ 13056558 (-)
G152466 NA non-coding downstream 80345 13054995 ~ 13055260 (-)
G152546 NA non-coding upstream 152583 13306444 ~ 13306916 (-)
LOC122327053 NA non-coding upstream 168482 13322343 ~ 13326566 (-)
G152623 NA non-coding upstream 384666 13538527 ~ 13648378 (-)
G152624 NA non-coding upstream 386361 13540222 ~ 13566877 (-)
G152687 NA non-coding upstream 648950 13802811 ~ 13803247 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other downstream 221362 12906133 ~ 12914243 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 566878 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 772210 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 990030 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 1086067 12045469 ~ 12049538 (-)
si:dkey-222p3.1 NA other upstream 44173 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 225828 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 423940 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 671508 13825369 ~ 13829699 (-)
shoc2 shoc2,LOC107717661,LOC107720363,LOC107685511 other upstream 677623 13831484 ~ 13849120 (-)

Expression


Co-expression Network