LOC122327213 (LOC107655323,LOC107566026)


Basic Information

Item Value
gene id LOC122327213
gene name LOC107655323,LOC107566026
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13180675 ~ 13183947 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222429.1
ATGGCAGTCCACTTTTTCACCAACACCACCCACTCTGGAATGAGCAATGTTTCTAAGACAGCTGTGAGAAGCAGTGCTGGGTCAATCACAGGAGCTCTGATCCTCTGCTTTTTGTTACCCATTGGTGTTTCTGGAAACCTCTTGACCATTTGGAGCATCCTGGCTCGAACCCGGCACCGTTCCATCACAACCCTCCTGATCCTAAACCTAGCCTTTGCGGATGGATTCTTGATGCTTTTGATGccttttttcattgtttatttgttaaaacgCAACTGGATTTTTACCCTGCCACTTTGCAAGATTCTGCTGTATCTCTGCAGTGCCAACATGTACGCTTCTATATTTTTGATAACGTTAATGAGTCTGCACAGGATGGTGGCTGTGGTGTGGTGGAAACAAGCTGGTGTCCTGACAGACCGGAAGGTGATAATTCGGGTGTTGATAGGACTGTGGATTTTTGCTCTAGGACTTTCAGTACCTAACTCTGTTTTCTGGACCACTTTCTGGAGTGCGCAAGAGCCAAAGTTTTTAATGTGTGCATGTAAACACCCACTGCCACGAGATGTGATACTGCAGCACTGTTTGGAAATTCTGCTGGGTTTCTTGACGCCGTATGGGCTGATCATAAGCAGTTATGTGTGTATCCTGCGAAGAATTCGCAAGACTCGGTTTCATAGGCACATCCGTAGTGAGAAACTCATTATGGTGATTGTTACCACCTTCGGCTTGACCTGGCTTCCTTTCCACACCATGAATATGGTGGAGATTGCTGGGACTTTTCTCCCAGAGGATTCCCATGCAAAAGCCAGACTACAGAAAATCTGGTCATCATTTCGAGGCTTCAGCTCCATTATCACCTTTATCAGCAGCTGCATAAACCCAGTTCTCTACACCTTTGCTGGAAAGTCCTACATTAAAGGCGAAGGCCTGGCCTTCATGGCACGGCTCTTTGAAGGCTCAAGATTTGAGTCCATCAGAAAGAACCGGCAGAATCAGAACAATCAGGatcaagaaaagaaagaagaggttGACCATCTAAGAGACAGAATCTGA

Function

NR:

description
PREDICTED: leukotriene B4 receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222429.1 True 1056 mRNA 0.46 4 13180675 13183947

Neighbor

gene id symbol gene type direction distance location
LOC122327158 LOC107659310,LOC107659300,LOC107655325 coding downstream 10481 13168948 ~ 13170194 (-)
LOC122327211 LOC107568072 coding downstream 26814 13135605 ~ 13153861 (-)
LOC122327152 LOC107655325 coding downstream 45339 13131506 ~ 13135336 (-)
LOC122327157 LOC107575395 coding downstream 120202 13059089 ~ 13060473 (-)
LOC122327164 LOC107569775 coding downstream 127100 13051332 ~ 13053575 (-)
LOC122327153 LOC107720344 coding upstream 4388 13188335 ~ 13191658 (-)
LOC122327216 LOC107720342,LOC107667884,LOC107571637 coding upstream 160209 13344156 ~ 13352425 (-)
LOC122327105 LOC107571641,LOC107667894,LOC107720378 coding upstream 168578 13352525 ~ 13362266 (-)
LOC122327106 LOC107571641,LOC107667894,LOC107720378 coding upstream 183347 13367294 ~ 13376995 (-)
jagn1b jagn1b,LOC107704549,LOC107602662,LOC107717677,LOC107667895,LOC107720379,LOC107571641 coding upstream 193534 13377481 ~ 13379500 (-)
G152472 NA non-coding downstream 13273 13101421 ~ 13167402 (-)
LOC122327171 NA non-coding downstream 56015 13121743 ~ 13124660 (-)
LOC122327170 NA non-coding downstream 70881 13106192 ~ 13109794 (-)
G152443 NA non-coding downstream 81899 13094105 ~ 13098776 (-)
G152468 NA non-coding downstream 124117 13056318 ~ 13056558 (-)
G152546 NA non-coding upstream 122497 13306444 ~ 13306916 (-)
LOC122327053 NA non-coding upstream 138396 13322343 ~ 13326566 (-)
G152623 NA non-coding upstream 354580 13538527 ~ 13648378 (-)
G152624 NA non-coding upstream 356275 13540222 ~ 13566877 (-)
G152687 NA non-coding upstream 618864 13802811 ~ 13803247 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other downstream 266432 12906133 ~ 12914243 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 611948 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 817280 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 1035100 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 1131137 12045469 ~ 12049538 (-)
si:dkey-222p3.1 NA other upstream 14087 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 195742 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 393854 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 641422 13825369 ~ 13829699 (-)
shoc2 shoc2,LOC107717661,LOC107720363,LOC107685511 other upstream 647537 13831484 ~ 13849120 (-)

Expression


Co-expression Network