LOC122327226 (LOC107556173)


Basic Information

Item Value
gene id LOC122327226
gene name LOC107556173
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15901132 ~ 15938182 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222435.1
ttttttccATCAAGAGATGAAAAAAAGGCAACAGGTCATCTATGAGACAACAACAATTTAAGCAAAGACAAgaaATGTTGCCTTTGCGCAGAGAGGTCTGGTGTcaggaagacatttttaaacataggtaAATGATTAACTCCCCGAGCAGGCAATAGATTCAAAggcaaaccaaaaaaaagattcaGTACTTGTGAACTGAGCTCAAAATGAGAGTTCCTGTAAAACTCTTCGGATTCAGCCTTTGGTGGTTTTTCTTAAATTGTGCCCGATGTCAAGTTTGCCCCCGAGAggacattaaatatgaaaacacagaGCTAGCTGAGAAAGCTTCATACACTGATGGCCAAACAGTGAGAGTGACCTGCATTACGGGTTATACCGGCTTGTATAAATTAAGGTGCGAAAAAGGAGTGTGGAAGGAATCCATTAAGCGGCCATGTGCAAAGAAGAAATGTAGTCATCCAGGCGATGCCCAAAATGGTGATTTTTTACTTACAGAGGAGAcagagtttgtttttggagCGACAGTGGTGTACACTTGTAAGAAAGGGTATGAAATGACGAGCAGAATCAATCAGCGTACCTGCAGAGCTCAAGGATGGGACAATGCTGTTCCTGTCTGTGAGGCTGTAAAATGTCCAGCGGTTCACACAAACGTGGATGTAACCGCAACAGGAAACACAGAGGAGGGAAGTTATGGTGATGTTGTTCATTTTGAGTGTGTGTCTTCTGACAAAAAGATAGAGGGAAGTAGTGACATTCACTGCAAAGAGACAGGCGAATGGAGTGATGCTGTACCAACATGCAAAGAAATAACTTGCACAGCCCCTGTCATATCAAATGGAAGTATTGTTGAGCTACAGGCAAAATACCTGAAAGATGCCGtattaaaatacagttgtgATCCACGGTTCAAACCCAGAGAGGGAATCCCCAGATGTGGTAAATTTGGCTGGACTCTGAACCCAGAGTGTGATGAAGTAACTTGTGAGCTGAAGACAACTAAATTAGGAGTAATCAGCATCTATCCAGAGGGGAAAACTATTTTCAAAGCTGGAGAGAAAGTGATGATTATGTTTGAAAGACACTGGCtcatttttacaaaagaaacCAGCAAATTATTCACGTGCCTAAATAGTGGAGATTGGGATCACATGACTGAGTGTGCAGAGATTAGTTGTGAAGTTCCACATAATCAGCATGTGTATTATCCAAGCGGTTACTTTAGAAGAGATTTGAGACTTGGagtgaaaaaaacatacagatgTGAGTCTGGATATCGTGAAACAGCAAAAGAAGCAACATGTACACCAGACGGATGGACACCAAACCCACTGTGTGCTGAGATTAGATGTGAAGTTCCACTTGACCAGCATGTGTCTAGACCAGACAATTACTTCAGAGGAGAAATGACATTTCAAGCAAGAAGATCTTACCGTTGTGAGTCTGGATATCGAGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGACACCCAACCCACTGTGTGCTGagatTAGATGTAAAGTTCCACTTGACCAGCATGTGTCTGAACCAAACAATTACTTCAGAGGAGAAATGAAATTTGAAACAACAAGATTTTACCGTTGTGAGTCTGGATATCGAGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGACACCAAACCCACTGTGTGCTGagaTTAGATGTGAAGTTCCACTTGACCAGCATGTTTTTAGACCAAACAATGACTTCAGAGGAGAAATGAAATTTGAAGCAAGAAGATCTTACCGTTGTGAGTCTGGATATCGAGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGACACCGAACCCACTGTGTGCTGagatTAGATGTGAAGTTCCACTTGGCCAGCATGTGTCTGAACCAAACAATTACTTCAGAGGAGAAATGAAATTTGAAGCAAGAAGATCTTACCGTTGTGAGTCTGGATATCGAGAAACAGCAGAAGAGGCCACATGTACACGAGACGGATGGACACCGAACCCACTGTGTGCTGagATTAGATGTGAAGTTCCACTTGACCAGCATGTGTCTGAACCAAACAATTACTTCAGAGGAGAAATGACATTTGAAGCAAAAAGATTTTACcgttgtgagcctggatatcgaGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGACACCAAACCCACTGTGTGCTGagaTTAGATGTGAAGTTCCACTTGGCCAGCATGTGTCTGAACCAAACAATGACTTCAGAGGAGAAATGAAATTTGAAGCAAGAAGATTTTACCGTTGTGAGTCTGGATATCGAGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGACACCAAACCCACTGTGTGCTGagatTAGATGTGAATTTCCACTTGACCAGCATGTGTCTAGACCAGACAGTGACTTCAGAGGAGAAATGACATTTGAAGCAAGAAGATCTTACCGTTGTGAGTCTGGATATCGAGAAACAGCAGAAGTGGCCACATGTACACGAGACGGATGGACACCAAACCCACTGTGTGCTGAGATTACATGTGGAGTTCCGCTTAATCAGCATGTATCCAGCCCAGAATgtcatttcaaagaaaaaagtaaattggAAGAAAAAATCAAATCTTACAGTTGTGAGTCTGGATATCGTAAAGCAGCAAAAGAGGCCACATGTACAGAAAACGGATGGACACCAAACCCACTGTGTGCTATTCTGCATGATTATGTCTTTAACAGAAATAACTTGCGAACTAAAGTTAAAAATTTTGACGTGGATAATCCAGATAAAAATACTTTCGAAGTTGGAGAAGGCGTCGTGATCACCTGCTTTGAAAACTACTGGATCCTTAGTACAAAAGAAACCAGCAAATCAATTACGTGCCAGAAAAATGGGCAGTGGGACTTCAAGCCTGTTTGTGAAGaaaagaaaaactgccttcatctatctatcataaaTGGGTTCATATACAGTAACTCCAAGGAAGAAATATTTTACTCCTGTGACAGTGGTTTTAAAACACTATCTGGAAGCTGGTGGGATTCAGTAACATGCACTGATGGATTGTTGTCTGAGGCCCGCTGCATCCGGGAGGATGATTGTGGTGCTCTTCCCATTGTTCAACATGGAAAAGTAATCACTTTAGATGAAAACAATGCTGAAGTAGATTGTGATCAAGGTTTCaaagcagaaacaaaacatataaaatgcGTCAATGGTACATGGCAGGATCCAGTTTGTAAGAtggaGTTGTTTTGTGGTATTCCTCCAAAGGTGAAAAATGGAGGCATAACAACTAAACCTGAAAAAAGGTATGCCATTGGATCTTCTGTAACCTACATTTGTAAAAGGTCATTCTCAATTATTGGGAGTGAAAGAGTTACATGCAGTGATGGAAAATGGAATCCATTGCCAAGTTGTGAagGTGAGCAGGGAAAGTCTACGGCCGAGGAATGGGAGATGAGAGAGGAGAAAATTGTCATAGAGAAAGTCTATGCCAAAGGAATGGAAAACCAGGATTATAGAGGGGGAGGAGGAGAAAACTTTGGCAGGCTCTGTCACGACAAAGAGAATGCAGtcaacagaaatcattctgaaagtAGGAAGTTGAAAGCACACCAGAGACCTGAAGATGTCAGAGATGTGAATGAAGACGGAGACGAGCTGATGCTGTAGCAACAAAATCCCCCTTTAGTCTGATACTTCAATCTACttgcatattttacattgttaacttcaaaataaattttgacATTCAAACAATTA

Function

NR:

description
PREDICTED: complement factor H-like

GO: NA

KEGG:

id description
K04004 CFH, HF1; complement factor H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222435.1 True 3794 mRNA 0.42 29 15901132 15938182

Neighbor

gene id symbol gene type direction distance location
LOC122327224 NA coding upstream 14887 15879254 ~ 15886245 (+)
aspm LOC107712224,LOC107699437,LOC107586448,LOC107556171,LOC107577714 coding upstream 148645 15735901 ~ 15752487 (+)
LOC122327180 LOC107593352,LOC107717987,LOC107679830,LOC107593351,LOC107717988,LOC107679833 coding upstream 612240 15220447 ~ 15288892 (+)
ddx59 ddx59,LOC107717990,LOC107578347 coding upstream 706260 15189827 ~ 15194872 (+)
scamp4 scamp4,LOC107717975,LOC107699425,LOC107719549,LOC107679840,LOC107586414 coding upstream 765536 15130400 ~ 15135596 (+)
LOC122327890 NA coding downstream 5551 15943733 ~ 15956310 (+)
LOC122327228 LOC107565915,LOC107709523,LOC107680281,LOC107565908,LOC107706842,LOC107680280 coding downstream 160549 16098731 ~ 16099807 (+)
trnaa-agc_18 NA coding downstream 184258 16122440 ~ 16122512 (+)
trnaa-agc_19 NA coding downstream 188354 16126536 ~ 16126608 (+)
trnaa-agc_20 NA coding downstream 189728 16127910 ~ 16127982 (+)
LOC122327891 NA non-coding upstream 7994 15773705 ~ 15893138 (+)
G153236 NA non-coding upstream 64378 15835260 ~ 15836754 (+)
G153231 NA non-coding upstream 70041 15827770 ~ 15831091 (+)
G153233 NA non-coding upstream 87046 15795830 ~ 15814086 (+)
G153244 NA non-coding upstream 98973 15795439 ~ 15802159 (+)
G153320 NA non-coding downstream 42940 15981122 ~ 15981346 (+)
G153321 NA non-coding downstream 44410 15982592 ~ 15982822 (+)
G153364 NA non-coding downstream 312258 16250440 ~ 16250973 (+)
G153399 NA non-coding downstream 365549 16303731 ~ 16305650 (+)
G153418 NA non-coding downstream 482470 16420652 ~ 16481470 (+)
dennd1b dennd1b,LOC107712206,LOC107586420,LOC107664901,LOC107741568,LOC107556170 other upstream 189046 15623093 ~ 15712086 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other upstream 681368 15195916 ~ 15219764 (+)
sirt7 sirt7,LOC107667823,LOC107705833,LOC107569249,LOC107706268 other upstream 1112439 14782382 ~ 14788693 (+)
G152808 LOC107588428,LOC107689379,LOC107573874,LOC107753503 other upstream 1209324 14686504 ~ 14691808 (+)
G152767 cp,LOC107572087,LOC107732248 other upstream 1438472 14458149 ~ 14462660 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other downstream 66382 16004564 ~ 16035615 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other downstream 139399 16077581 ~ 16078895 (+)
LOC122327131 NA other downstream 225201 16163383 ~ 16171629 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other downstream 379205 16317387 ~ 16386176 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other downstream 555520 16493702 ~ 16499413 (+)

Expression


Co-expression Network