atpaf1 (atpaf1,LOC107653579,LOC107715059)


Basic Information

Item Value
gene id atpaf1
gene name atpaf1,LOC107653579,LOC107715059
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9223810 ~ 9227301 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222443.1
CGCCCGGACACTCATAGATGTGGGACGGGGAAAAGATGGCGGCGGCTGTGGTACAAATGTCATGTTTGTACCGAGGGATGTTGGCGGTCAGAGCCACTGGCATCCGCCCGCTGATCCCGGGACTCGTGCCGTCTCAGTTCAGGGCGTTCTCCATGAAGAAAGAACCGGAGCTGGAGGAAAATCCGTATTACAGCAAATATGAAGAGAAGATCAGGAAACTGCGGAGCTCGAAACCTCAGGAGTATAAAGCCCGGCTGGAGAAGCGCGGTGAGGTGAAGACGGAGCCGCTGGGGCAGTCCAGACAAGCGGAGTTCGTCAAGTACATGGAGAAAGAGcGTGGTGAGGCAGGACCCGGGGGCTTCACCAAAGATAAGACTTTAGGGTCTATTCTTAACCTTGATATGGTTCAGGAGAAATCTGGAGCTGACATTGCAGAGCTTTGGATGCAGTACTTCTCAAAGAAAGACACGATCAGTGCCACATACCAGTGAGGCTCAACATTTGACGTTATTTTTGGCCGTGCCGCATCTTGCCCAACATTTCTGTACGCTCTGCCCCAGAAGGAGGGCTATGAGTTTTTTGTGGGCCAGTGGGCTGGTCGTGAACTGCACTTCACATCTTTAATCAATGTtcagACAATGGGAGAAAATGCACCCAGCCATCTAATTTTATACCACTATACGGACCTGCAAAAGGACAAAGACATTGTGCTGATGACCGCTGAGATGGATAGCAAATTTGTGacTGTCCACCAGGCGCAGTGCTTAGCCAATCAGGTGCAGCTGTTTTACGGATCGCAGCGGCTCGAGACGTTCCGATTGGTCGAGACCTTCAACCACCAACCGGCGGAGTTTAAACACATGTCTGTGATCGCAGAACTAGAGCAGAGCGGCGTTGGACCTGCGCTCACTACGAAATAATACTGATATGTTTCTTCACGTGGACTGTTGCCTTGAAGGAAGCGCTCTGTAACTATGTACGGAGGCTTTTGCAGCCAGATGAGAAGATGTGCGTTGCCTTTCGGTAGATTCGAGTTAGATATGGCATGATGTATGAATATTAAACATCATGGTTATCTGCTACTGTGTATGCAGATTTTGATTCTGTCCTGATTAGCGTTGGGCACGAAATATTGTGTGATCGTTTTGTgcttaaaaatccaaaaaaggaAACTTATTTATGCCGTATGTTTCCAGCAAATTAAAAGTCGTATTGTAGATGCTTACGCATCCGTTTCTTTCGGAAACGGCGTACTTGGTTCTTCCTTACGTATAGTGTTACTGGATTTAGATCCGTTTAAGGAGTTATGGCCGTCTTTCTTCCTTCTCCACTGAGATGAACACACCTGTAGCCTGGTGAGTGAGATCCACAAATAGACTGAAAGGCCCTGAGGACCCAAGCAGCATGCAGTAATGTTCCTGTATATCCATCGCGGTTGTGTTCGTAATAAAGCTTTACGCTTTGGCGGTA

Function

symbol description
atpaf1 Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1).

NR:

description
PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 1

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K07555 ATPeAF1, ATPAF1, ATP11; ATP synthase mitochondrial F1 complex assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222443.1 True 1470 mRNA 0.48 9 9223810 9227301

Neighbor

gene id symbol gene type direction distance location
frem1b frem1b,LOC107669836,LOC107599441,LOC107592728,LOC107728586,LOC107715059,LOC107653550 coding upstream 274 9198024 ~ 9223536 (+)
tm2d1 tm2d1,LOC107715116,LOC107653653,LOC107669801,LOC106574044 coding upstream 218905 8995971 ~ 9004905 (+)
tal1 tal1,LOC107669848 coding upstream 337382 8880269 ~ 8886428 (+)
ier5 ier5,LOC107731541 coding upstream 363741 8858464 ~ 8860069 (+)
si:dkey-121a11.3 si:dkey-121a11.3,LOC107669817,LOC107731537,LOC107715110,LOC107653549 coding upstream 376754 8828910 ~ 8847056 (+)
rab3b rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC103027359,LOC108270584,LOC105904424 coding downstream 1107 9228408 ~ 9235230 (+)
nrd1b nrd1b,LOC107669832,LOC107592727,LOC107728531 coding downstream 8798 9236099 ~ 9248034 (+)
axdnd1 axdnd1,LOC107669794,LOC107653552,LOC107728533,LOC107578687 coding downstream 21386 9248687 ~ 9257262 (+)
tdrd5 LOC107669834,LOC107728589,LOC107592689,LOC107715068,LOC107653580,LOC107576589 coding downstream 33461 9260762 ~ 9270135 (+)
fam163ab LOC107728553,LOC107592741,LOC107669804 coding downstream 45453 9272754 ~ 9281842 (+)
G150983 NA non-coding upstream 76422 9145211 ~ 9147388 (+)
LOC122327612 NA non-coding upstream 152638 9068732 ~ 9071172 (+)
G150970 NA non-coding upstream 193900 9025901 ~ 9029910 (+)
G150969 NA non-coding upstream 209958 9013534 ~ 9013852 (+)
G150967 NA non-coding upstream 228327 8995206 ~ 8995483 (+)
G151163 NA non-coding downstream 50389 9277690 ~ 9283004 (+)
G151178 NA non-coding downstream 133127 9360428 ~ 9365322 (+)
G151194 NA non-coding downstream 245685 9472986 ~ 9475031 (+)
G151210 LOC107669820,LOC107592722,LOC107655244,LOC107599472 non-coding downstream 287439 9514740 ~ 9515568 (+)
G151294 NA non-coding downstream 373255 9600556 ~ 9667133 (+)
G150965 NA other upstream 235119 8988186 ~ 8988691 (+)
G150946 NA other upstream 301843 8921698 ~ 8921967 (+)
G150945 NA other upstream 304030 8919279 ~ 8919780 (+)
G150940 NA other upstream 321499 8901143 ~ 8902311 (+)
pdzk1ip1 NA other upstream 331611 8890622 ~ 8892199 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 227537 9454838 ~ 9530165 (+)
G151232 NA other downstream 350378 9577679 ~ 9580151 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 660862 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 668140 9895441 ~ 9910793 (+)
LOC122328159 NA other downstream 696246 9923547 ~ 9963634 (+)

Expression


Co-expression Network