cirbpb (LOC107599461,LOC107655227,LOC107719610)


Basic Information

Item Value
gene id cirbpb
gene name LOC107599461,LOC107655227,LOC107719610
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10075032 ~ 10080097 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222481.1
TGACGTGCCACGACGTGGACACGCCCACAGAGATCTGCAGTCACGTGAAGCCTTTAAACTGGCGCCATTTTCTGTGCGAGCTCCTATTCTGCTGCAGTCGGCGTCGCGTCCTGCACTCTTTTCAGTGTTCGAGACAACCTGAGCACGTGATTCAACATGTCTGACGAGGGAAAGCTCTTCATTGGTGGTCTGAGCTATGATACCACAGAGCAGTCCTTAGAGGAGGCTTTCTCCAAATACGGATCAATTGCCAAAGttGATGTAATCCGGGACCGCGAGACAGACCGGTCTAGAGGCTTTGGCTTTGTGACATTTGAAAATCCAGAGGATGCAAAGGATGCTATGGCTGCAATGAATGGAAAGTCTGTTGATGGCCGCATGATTCGTGTTGATGAAGCTGGCAAATCTGGTAGACGGTCCGGTGGTTTCAGAGGAGGTTCTGGAGGCGGCAGGGGGTTCTTCAGGGGAGGCAGAGGTAGAGGTGGTGGAGGATATGGTGGAGACCGCAGCTATGGGGGTGACAGAAGCTTTGGTGGTGACCGGGGCTACGGCGGAGGTGACCGATCATATGGGGGTGGAGATAGAGGCTATGGTGGAGGAGAGAGAAGCTATGGTGGAGGTGACCGGTCCTATGGTGGTGGTGGCGGCGGCGGATACTCCAACAGGAGTGGCGGATACTCCGGTGGCAGCGGCGGTGGATACAGGGATAACAGAAGCCAGGGTGGATATGACCGTTCTGGTGGATCCTACAGAGACAGTTACGACAGCTATGCTTCAcacgagtaaaaaaaaatcctgattgCAAGATCATCCCTTCGCTGGCTGTATATAAAAAGATGCGCTCTTGgaagaccttttttttgttttacttttctttacGTTTTGTGTTCTGATTCAAATGTTCTATTAAAGACACTCCTTTTTTACCGTGTCAAGTATCCGCAGGATGTTCCTCTCATTGAGGAGCTGCCTAAAATCCATGAGCATTCACTTACTGTACGAGTTTCAAGCCCTGTGAGGCTACCTGTATCTGCCATTTTTACCTTGCGATTTGTGTTATAGATGCTCACGGAGGTTTGAAATTGtcctttgttttcctttttagtgTGTGTTTAAGAAATGTCTCTGAAACCATGCGTAAAAATTGACCTGTCCAACACAGCCTGATAGCTTCTAAAAACCAATTTCCTCAAAGATCTTTGGACCAATTTCTTAATATCGGCTCACTTAAAGTGCTTAGAGgagcatttgcatttaaacaattttaaaacggAACCTTGAAAATATTCTAATCTGATCCTCCAATAGAAGCTTGATAAGCTGTGATGTGTTCTTTATTGCTCCTTGCCACCTTCATTTTGTGATGCATTCCTTTAGTGAAGCAAGGTAGGCATTTTGCATTGGAGTTGTCTCCAGCAAACCTCCTTGATATTGCTAAAGATTTGTAAATATTCATTATCCAAAGAGTAAACCACTGGGTCATTCCGCCTCTCGTTAGGACCGGTGCCCCAAGGTGCTTTATTCTTTGACCAgtctaaattttattttttaaaagtatgctcTACTGTGGACTGAACTTATCCTCTTAAATGTCAAGATTTTGTTCCTCCTTGGAAAGAAATGTGCTCTGTTCTGTATATCAACACCtcagaatcttttttttctttttgtattaatCTGGCTTCATGAAGCTCATTAAAAAATGGTTGGAAAATG
>XM_043222482.1
GTGACGTGCCACGACGTGGACACGCCCACAGAGATCTGCAGTCACGTGAAGCCTTTAAACTGGCGCCATTTTCTGTGCGAGCTCCTATTCTGCTGCAGTCGGCGTCGCGTCCTGCACTCTTTTCAGTGTTCGAGACAACCTGAGCACGTGATTCAACATGTCTGACGAGGGAAAGCTCTTCATTGGTGGTCTGAGCTATGATACCACAGAGCAGTCCTTAGAGGAGGCTTTCTCCAAATACGGATCAATTGCCAAAGttGATGTAATCCGGGACCGCGAGACAGACCGGTCTAGAGGCTTTGGCTTTGTGACATTTGAAAATCCAGAGGATGCAAAGGATGCTATGGCTGCAATGAATGGAAAGTCTGTTGATGGCCGCATGATTCGTGTTGATGAAGCTGGCAAATCTGGTAGACGGTCCGGTGGTTTCAGAGGAGGTTCTGGAGGCGGCAGGGGGTTCTTCAGGGGAGGCAGAGGTGGTGGAGGATATGGTGGAGACCGCAGCTATGGGGGTGACAGAAGCTTTGGTGGTGACCGGGGCTACGGCGGAGGTGACCGATCATATGGGGGTGGAGATAGAGGCTATGGTGGAGGAGAGAGAAGCTATGGTGGAGGTGACCGGTCCTATGGTGGTGGTGGCGGCGGCGGATACTCCAACAGGAGTGGCGGATACTCCGGTGGCAGCGGCGGTGGATACAGGGATAACAGAAGCCAGGGTGGATATGACCGTTCTGGTGGATCCTACAGAGACAGTTACGACAGCTATGCTTCAcacgagtaaaaaaaaatcctgattgCAAGATCATCCCTTCGCTGGCTGTATATAAAAAGATGCGCTCTTGgaagaccttttttttgttttacttttctttacGTTTTGTGTTCTGATTCAAATGTTCTATTAAAGACACTCCTTTTTTACCGTGTCAAGTATCCGCAGGATGTTCCTCTCATTGAGGAGCTGCCTAAAATCCATGAGCATTCACTTACTGTACGAGTTTCAAGCCCTGTGAGGCTACCTGTATCTGCCATTTTTACCTTGCGATTTGTGTTATAGATGCTCACGGAGGTTTGAAATTGtcctttgttttcctttttagtgTGTGTTTAAGAAATGTCTCTGAAACCATGCGTAAAAATTGACCTGTCCAACACAGCCTGATAGCTTCTAAAAACCAATTTCCTCAAAGATCTTTGGACCAATTTCTTAATATCGGCTCACTTAAAGTGCTTAGAGgagcatttgcatttaaacaattttaaaacggAACCTTGAAAATATTCTAATCTGATCCTCCAATAGAAGCTTGATAAGCTGTGATGTGTTCTTTATTGCTCCTTGCCACCTTCATTTTGTGATGCATTCCTTTAGTGAAGCAAGGTAGGCATTTTGCATTGGAGTTGTCTCCAGCAAACCTCCTTGATATTGCTAAAGATTTGTAAATATTCATTATCCAAAGAGTAAACCACTGGGTCATTCCGCCTCTCGTTAGGACCGGTGCCCCAAGGTGCTTTATTCTTTGACCAgtctaaattttattttttaaaagtatgctcTACTGTGGACTGAACTTATCCTCTTAAATGTCAAGATTTTGTTCCTCCTTGGAAAGAAATGTGCTCTGTTCTGTATATCAACACCtcagaatcttttttttctttttgtattaatCTGGCTTCATGAAGCTCATTAAAAAATGGTTGGAAAATG
>XM_043222483.1
CGTGACGTGCCACGACGTGGACACGCCCACAGAGATCTGCAGTCACGTGAAGCCTTTAAACTGGCGCCATTTTCTGTGCGAGCTCCTATTCTGCTGCAGTCGGCGTCGCGTCCTGCACTCTTTTCAGTGTTCGAGACAACCTGAGCACGTGATTCAACATGTCTGACGAGGGAAAGCTCTTCATTGGTGGTCTGAGCTATGATACCACAGAGCAGTCCTTAGAGGAGGCTTTCTCCAAATACGGATCAATTGCCAAAGttGATGTAATCCGGGACCGCGAGACAGACCGGTCTAGAGGCTTTGGCTTTGTGACATTTGAAAATCCAGAGGATGCAAAGGATGCTATGGCTGCAATGAATGGAAAGTCTGTTGATGGCCGCATGATTCGTGTTGATGAAGCTGGCAAATCTGGTAGACGGTCCGGTGGTTTCAGAGGAGGTTCTGGAGGCGGCAGGGGGTTCTTCAGGGGAGGCAGAGGTAGAGGTGGTGGAGGATATGGTGGAGACCGCAGCTATGGGGGTGACAGAAGCTTTGGTGGTGACCGGGGCTACGGCGGAGGTGACCGATCATATGGGGGTGGAGATAGAGGCTATGGTGGAGGAGAGAGAAGCTATGGTGGAGGTGACCGGTCCTATGGTGGTGGTGGCGGCGGCGGATACTCCAACAGGAGTGGCGGATACTCCGGTGGCAGCGGCGGTGGATACAGGGATAACAGAAGCCAGGGTGGATATGACCGTTCTGGTGGATCCTACAGAGACAGTTACGACAGCTATGACTGAGTCCCCTTGACGTGTTGTAATTGAAAACCTAGAGGAGCAACTTTGAATTGacttcattttcatggcaaaaacACAGAGAGTTCATGGAAATCAGTGCTGTGCAGATGAACCCATCTCCTAAAAGGAAGCAGAGAAAGTGTCAACTTGCAAAATGTCACTTCCGTTTAGATTGAAGTTTGACTATTTTGCTTGTGTAGAAAGGTGCTAACTTGGTGTTGTGAGAATGACACATCAATTCAATAAAGCTTTTTTACATCTGA
>XM_043222484.1
CGTGACGTGCCACGACGTGGACACGCCCACAGAGATCTGCAGTCACGTGAAGCCTTTAAACTGGCGCCATTTTCTGTGCGAGCTCCTATTCTGCTGCAGTCGGCGTCGCGTCCTGCACTCTTTTCAGTGTTCGAGACAACCTGAGCACGTGATTCAACATGTCTGACGAGGGAAAGCTCTTCATTGGTGGTCTGAGCTATGATACCACAGAGCAGTCCTTAGAGGAGGCTTTCTCCAAATACGGATCAATTGCCAAAGttGATGTAATCCGGGACCGCGAGACAGACCGGTCTAGAGGCTTTGGCTTTGTGACATTTGAAAATCCAGAGGATGCAAAGGATGCTATGGCTGCAATGAATGGAAAGTCTGTTGATGGCCGCATGATTCGTGTTGATGAAGCTGGCAAATCTGGTAGACGGTCCGGTGGTTTCAGAGGAGGTTCTGGAGGCGGCAGGGGGTTCTTCAGGGGAGGCAGAGGTAGAGGTGGTGGAGGATATGGTGGAGACCGCAGCTATGGGGGTGACAGAAGCTTTGGTGGTGACCGGGGCTACGGCGGAGGTGACCGATCATATGGGGGTGGAGATAGAGGCTATGGTGGAGGAGAGAGAAGCTATGGTGGAGGTGACCGGTCCTATGGTGGTGGTGGCGGCGGCGGATACTCCAACAGGAGTGGCGGATACTCCGGTGGCAGCGGCGGTGGATACAGGGATAACAGGTTTTAGAAGCCAGGGTGGATATGACCGTTCTGGTGGATCCTACAGAGACAGTTACGACAGCTATGCTTCAcacgagtaaaaaaaaatcctgattgCAAGATCATCCCTTCGCTGGCTGTATATAAAAAGATGCGCTCTTGgaagaccttttttttgttttacttttctttacGTTTTGTGTTCTGATTCAAATGTTCTATTAAAGACACTCCTTTTTTACCGTGTCAAGTATCCGCAGGATGTTCCTCTCATTGAGGAGCTGCCTAAAATCCATGAGCATTCACTTACTGTACGAGTTTCAAGCCCTGTGAGGCTACCTGTATCTGCCATTTTTACCTTGCGATTTGTGTTATAGATGCTCACGGAGGTTTGAAATTGtcctttgttttcctttttagtgTGTGTTTAAGAAATGTCTCTGAAACCATGCGTAAAAATTGACCTGTCCAACACAGCCTGATAGCTTCTAAAAACCAATTTCCTCAAAGATCTTTGGACCAATTTCTTAATATCGGCTCACTTAAAGTGCTTAGAGgagcatttgcatttaaacaattttaaaacggAACCTTGAAAATATTCTAATCTGATCCTCCAATAGAAGCTTGATAAGCTGTGATGTGTTCTTTATTGCTCCTTGCCACCTTCATTTTGTGATGCATTCCTTTAGTGAAGCAAGGTAGGCATTTTGCATTGGAGTTGTCTCCAGCAAACCTCCTTGATATTGCTAAAGATTTGTAAATATTCATTATCCAAAGAGTAAACCACTGGGTCATTCCGCCTCTCGTTAGGACCGGTGCCCCAAGGTGCTTTATTCTTTGACCAgtctaaattttattttttaaaagtatgctcTACTGTGGACTGAACTTATCCTCTTAAATGTCAAGATTTTGTTCCTCCTTGGAAAGAAATGTGCTCTGTTCTGTATATCAACACCtcagaatcttttttttctttttgtattaatCTGGCTTCATGAAGCTCATTAAAAAATGGTTGGAAAATG
>XM_043222485.1
CCGTGACGTGCCACGACGTGGACACGCCCACAGAGATCTGCAGTCACGTGAAGCCTTTAAACTGGCGCCATTTTCTGTGCGAGCTCCTATTCTGCTGCAGTCGGCGTCGCGTCCTGCACTCTTTTCAGTGTTCGAGACAACCTGAGCACGTGATTCAACATGTCTGACGAGGGAAAGCTCTTCATTGGTGGTCTGAGCTATGATACCACAGAGCAGTCCTTAGAGGAGGCTTTCTCCAAATACGGATCAATTGCCAAAGttGATGTAATCCGGGACCGCGAGACAGACCGGTCTAGAGGCTTTGGCTTTGTGACATTTGAAAATCCAGAGGATGCAAAGGATGCTATGGCTGCAATGAATGGAAAGTCTGTTGATGGCCGCATGATTCGTGTTGATGAAGCTGGCAAATCTGGTAGACGGTCCGGTGGTTTCAGAGGAGGTTCTGGAGGCGGCAGGGGGTTCTTCAGGGGAGGCAGAGGTAGAGGTGGTGGAGGATATGGTGGAGACCGCAGCTATGGGGGTGACAGAAGCTTTGGTGGTGACCGGGGCTACGGCGGAGGTGACCGATCATATGGGGGTGGAGATAGAGGCTATGGTGGAGGAGAGAGAAGCTATGGTGGAGGTGACCGGTCCTATGGTGGTGGTGGCGGCGGCGGATACTCCAACAGGAGTGGCGGATACTCCGGTGGCAGCGGCGGTGGATACAGGGATAACAGGTTTTAGAAGCCAGGGTGGATATGACCGTTCTGGTGGATCCTACAGAGACAGTTACGACAGCTATGACTGAGTCCCCTTGACGTGTTGTAATTGAAAACCTAGAGGAGCAACTTTGAATTGacttcattttcatgg

Function

NR:

description
PREDICTED: cold-inducible RNA-binding protein B-like isoform X3

GO:

id name namespace
GO:0009409 response to cold biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K13195 CIRBP; cold-inducible RNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222481.1 False 1716 mRNA 0.45 7 10076911 10080094
XM_043222482.1 False 1711 mRNA 0.45 7 10076911 10080095
XM_043222483.1 False 1039 mRNA 0.51 8 10075032 10080096
XM_043222484.1 True 1725 mRNA 0.45 7 10076911 10080096
XM_043222485.1 False 852 mRNA 0.53 7 10075963 10080097

Neighbor

gene id symbol gene type direction distance location
si:ch211-212d10.2 si:ch211-212d10.2,LOC107728577,LOC107687719,LOC106613739,LOC101487565 coding downstream 27158 10044222 ~ 10047874 (-)
tssk6 tssk6,LOC107687737,LOC107728539,LOC107554804,LOC107599475,LOC107719648 coding downstream 80025 9994192 ~ 9995007 (-)
tmem161a tmem161a,LOC107728546,LOC107599454,LOC107719614,LOC107554814,LOC107687722 coding downstream 156116 9913423 ~ 9918916 (-)
tmem221 NA coding downstream 180065 9890550 ~ 9894967 (-)
rfxank rfxank,LOC107687741,LOC107554808,LOC107728547,LOC107719616,LOC107599486 coding downstream 187173 9886173 ~ 9887859 (-)
midn LOC107554818,LOC107728568,LOC107687715,LOC107655225,LOC107719606 coding upstream 71365 10151462 ~ 10173317 (-)
atp5f1d atp5d,LOC107728581,LOC107719603,LOC107554819,LOC107569937 coding upstream 102941 10183038 ~ 10187587 (-)
LOC122328192 NA coding upstream 313915 10394012 ~ 10396169 (-)
LOC122327734 celf5a,celf5,LOC107675909 coding upstream 387030 10467127 ~ 11650822 (-)
zgc:165603 celf5a,LOC107719642,LOC107655216 coding upstream 546689 10626786 ~ 10650952 (-)
G151439 NA non-coding downstream 2140 10053918 ~ 10072892 (-)
G151444 NA non-coding downstream 46593 10023218 ~ 10028439 (-)
LOC122327858 NA non-coding downstream 209144 9819693 ~ 9865888 (-)
G151319 hapln4,LOC107554801,LOC107728536,LOC107719665,LOC107599484 non-coding downstream 453867 9616790 ~ 9621165 (-)
G151289 NA non-coding downstream 610519 9426153 ~ 9464513 (-)
G151468 LOC107687734,LOC107728578,LOC107719602,LOC107655224,LOC107569929 non-coding upstream 109733 10189830 ~ 10194857 (-)
G151457 NA non-coding upstream 164821 10244918 ~ 10249842 (-)
G151507 NA non-coding upstream 295076 10375173 ~ 10375615 (-)
G151508 NA non-coding upstream 295544 10375641 ~ 10375960 (-)
G151569 NA non-coding upstream 362390 10442487 ~ 10442738 (-)
G151425 NA other downstream 91885 9957811 ~ 9983147 (-)
gpx4a gpx4a,LOC108429535 other downstream 572026 9498669 ~ 9503006 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other downstream 903101 9013548 ~ 9171931 (-)
G151107 tal1,LOC107669848 other downstream 1188091 8884121 ~ 8886941 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 1462288 8600350 ~ 8612744 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 201925 10282022 ~ 10321663 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other upstream 339030 10419127 ~ 10422354 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other upstream 854955 10935052 ~ 10994952 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other upstream 1094046 11174143 ~ 11188692 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other upstream 1149877 11229974 ~ 11231249 (-)

Expression


Co-expression Network