capn1b (LOC107755342,LOC107655377,LOC107565170,LOC107659327,LOC107722661)


Basic Information

Item Value
gene id capn1b
gene name LOC107755342,LOC107655377,LOC107565170,LOC107659327,LOC107722661
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 12659174 ~ 12670694 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222506.1
GGCGTGACCGTGCACTGCGGTACCCTGATTGTTGCGTCCCTTCTGCACTCGTCTGTTCAtcattctcttttttccccGCTATTTTAAAACGCACCAGCTGGGCTGATAATCACAGTGACAACTAAACACTGCTCGCGGCCCACACAAGGAACCTAAGTATGTATTCCATCGGAGGAGTGTCGTCGCGTATTTACAAGGAACGCCTGCAGGCAGAAGGGATGGGAAGCAATGACAATGCGGTCAAGTTCCTGAACCAGGACTACGAGGAGCTGAAGAGAGAGTGTCTGGAGGGCGGCAGGCTGTTTGAGGACCCCTGCTTCCCCGCCGTGCCACAGTCACTGGGCTTCAAGGAGCTCGCGCCAAACTCCTCCAAAACACGCGGCGTGCAGTGGTTAAGACCCTCTGAGCTGTCAAATAACCCTGAGTTCATAGTGGGCGGAGCCACACGTACAGATATTTGCCAGGGGGCCCTAGGGGACTGTTGGCTGTTAGCTGCCATCGCGTCCCTGACTTTAAACGACAGGCTGCTTCACAGAGTTGTACCTCATGGACAAAGCTTTACGGATGAGTATGCCGGCATCTTCCACTTCCAGTTCTGGCAGTTTGGCGAGTGGGTGGACATTGTGATCGATGACCGTTTGCCAGTGAAGGATAAAGAGCTGATGTTTGTTCACTCGGCAGAGGGAAATGAGTTTTGGAGCGCCCTGCTGGAAAAAGCCTATGCCAAGCTAAATGGCTCATATGAAGCTCTTTCGGGAGGATCCACCACCGAAGGCTTCGAGGACTTCACGGGTGGAGTAGCGGAGATGTATGAGCTGTGTAATGCTCCCAAAGATTTGCCCCGCATCATTGCCAAAGCCTTGGAGAGAGGCTCACTGTTGGGCTGCTCTATTGATGTGAGTCCCCACAGCGCCTACTACAGGCCTGGAGACACAGAGCAGCATTTATGGATCCACATACtcacttttttatgtaatttgagTGTATTTGTCTGGCAGATCACCAGTGCCTTTGATATGGAGGCTGTAACCTTTAAGAAGCTGGTGAAGGGGCATGCATACTCCGTCACGGGTCTCAGAGAGGTGAATTTCCGTGGCAGCAGAGAGAGGCTCATCCGCATCCGAAACCCTTGGGGGCAAGTTGAGTGGACGGGGGCTTGGAGTGACAATTCTTCTGAGTGGAATGGGATTGATCCAGCAGAAAGAGAGGAGATGAACAACCACATGGAAGATGGCGAGTTCTGGATGTCATTTCAAGAGTTCAAACGTCAGTTTTCTCGCCTGGAGATCTGTAACCTCACGCCGGACGCTCTGAGTGAAGACTCTCTTAATTTCTGGAACACGATTAAATTTAACGGCACCTGGAGGAGAGGAAGCACAGCGGGGGGCTGCAGGAACCACCCCAatacATTCTGGATAAACCCTCAATATAAGATCACGCTGCTGGAGGAAGATGATGATCCTGAAGATGATGAGGTGGCCTGCAGCTTCCTGGTGGCCTTGATGCAGAAGGACAGGCGACGTTACCGCAAGCAAGGGCAGGACATGCACACCATCGGCTTCGCCTTATATAAGGTCCCAGAAGAGTTCAGTGGTTCCCAGAGCATTCACCTCAAGAAGGACTTTTTCTTGCGTCAGTCATCCTGCGCACGCTCAAAAACCTTCATTAACCTGCGGGAAGTCAGCACCCGACTGAAGCTGCCGCCGGGCGAGTATCTCATAGTCCCATCCACTTTTGAGCCCGGAAAAGAGGCCGATTTCGTCCTGCGAGTCTTCACTGAGAAACAGTCAGAAACTCAagaaatgGATGATGAGATTTCATTTAACCTGGAAGATGAAGAAGAGGTTTCAGAAGATGACATGGAAGACTCTTTCAAAAAACTGTTTGCGCAGCTGTCCGGAGAGGACATGGAGATTTCAGTTCACGAGCTCAGGACCATTCTGAACCGAGTGGTTGGCAAACACAGGGACTTGAAGACAGACGGGTTCAGTTTGGAGTCGTGCAGGTGCATGGTCAGCCTGCTGGATAAAGATGGCAGCGCTCGCCTGGGAATTGTGGAGTTCCAGATTCTGTGGAATAAAATCAGGAAGTGGCTGGGCATTTTTAGAAAGTTTGATCTGGATAAATCTGGCACGATGAGCTCGTATGAAATGCGCCTCGCCGTCGAGTCGGCcgGTTTTAAACTCAATAACAAGCTACATCAAATAATCGTGGCGCGATATTCTGATGGAGAAACGATCGACTTTGACAATTTCGTCTGTTGCCTGGTCAAGCTGGAGGCCATGTTCAggACTTTTAGAGAGCTGGACAAAGAGGGTTCAGGCGTCGCAGAGCTCAATGTTAGTGAGTGGCTGTACCTGACCATGTGTGGTTGATGTGTGGAGATCATATGGTGAAGGGCCAAAATCACTCCCTCAGTTGCAGCTTTAAGCCATTACACCCAAAGATCCCGGAGCAATACAGTACATACTGCCTTAAAACATCCATCATAAGCCTCACAATTAATATCCTCATTATGCAAGGCATGTTTAACACTTATAAACCACtaaatgttaagaaaaaatgtaatgcatcgTTTCGGAGAGCAACGTAACATAGCTTTATGATAAAGTGCATGCCACTAACATTATGCTGTAGGTGATTTTACTGTACCTCGCATATGTAGCTGAACTTAGCGTTTGAGGTTTGCACCactgataattaaaaatgtaactttcatttgattttgttcaGAGTGTGACTTTGATAGGAGTTACGATCACTGTGATTTGACGTGCTATTATTTATAGAAGAATAGCTTGCGTTCTTACAGGATATTCAGGGAATTgttctaaatattttgttttatgctgcTTGTTAATTTAGGGAAGAGAAAATAAAGGATAAATATACCTTC
>XM_043222507.1
CATGGGCGTGACCGTGCACTGCGGTACCCTGATTGTTGCGTCCCTTCTGCACTCGTCTGTTCAtcattctcttttttccccGCTATTTTAAAACGCACCAGCTGGGCTGATAATCACAGTGACAACTAAACACTGTATGTATTCCATCGGAGGAGTGTCGTCGCGTATTTACAAGGAACGCCTGCAGGCAGAAGGGATGGGAAGCAATGACAATGCGGTCAAGTTCCTGAACCAGGACTACGAGGAGCTGAAGAGAGAGTGTCTGGAGGGCGGCAGGCTGTTTGAGGACCCCTGCTTCCCCGCCGTGCCACAGTCACTGGGCTTCAAGGAGCTCGCGCCAAACTCCTCCAAAACACGCGGCGTGCAGTGGTTAAGACCCTCTGAGCTGTCAAATAACCCTGAGTTCATAGTGGGCGGAGCCACACGTACAGATATTTGCCAGGGGGCCCTAGGGGACTGTTGGCTGTTAGCTGCCATCGCGTCCCTGACTTTAAACGACAGGCTGCTTCACAGAGTTGTACCTCATGGACAAAGCTTTACGGATGAGTATGCCGGCATCTTCCACTTCCAGTTCTGGCAGTTTGGCGAGTGGGTGGACATTGTGATCGATGACCGTTTGCCAGTGAAGGATAAAGAGCTGATGTTTGTTCACTCGGCAGAGGGAAATGAGTTTTGGAGCGCCCTGCTGGAAAAAGCCTATGCCAAGCTAAATGGCTCATATGAAGCTCTTTCGGGAGGATCCACCACCGAAGGCTTCGAGGACTTCACGGGTGGAGTAGCGGAGATGTATGAGCTGTGTAATGCTCCCAAAGATTTGCCCCGCATCATTGCCAAAGCCTTGGAGAGAGGCTCACTGTTGGGCTGCTCTATTGATGTGAGTCCCCACAGCGCCTACTACAGGCCTGGAGACACAGAGCAGCATTTATGGATCCACATACtcacttttttatgtaatttgagTGTATTTGTCTGGCAGATCACCAGTGCCTTTGATATGGAGGCTGTAACCTTTAAGAAGCTGGTGAAGGGGCATGCATACTCCGTCACGGGTCTCAGAGAGGTGAATTTCCGTGGCAGCAGAGAGAGGCTCATCCGCATCCGAAACCCTTGGGGGCAAGTTGAGTGGACGGGGGCTTGGAGTGACAATTCTTCTGAGTGGAATGGGATTGATCCAGCAGAAAGAGAGGAGATGAACAACCACATGGAAGATGGCGAGTTCTGGATGTCATTTCAAGAGTTCAAACGTCAGTTTTCTCGCCTGGAGATCTGTAACCTCACGCCGGACGCTCTGAGTGAAGACTCTCTTAATTTCTGGAACACGATTAAATTTAACGGCACCTGGAGGAGAGGAAGCACAGCGGGGGGCTGCAGGAACCACCCCAatacATTCTGGATAAACCCTCAATATAAGATCACGCTGCTGGAGGAAGATGATGATCCTGAAGATGATGAGGTGGCCTGCAGCTTCCTGGTGGCCTTGATGCAGAAGGACAGGCGACGTTACCGCAAGCAAGGGCAGGACATGCACACCATCGGCTTCGCCTTATATAAGGTCCCAGAAGAGTTCAGTGGTTCCCAGAGCATTCACCTCAAGAAGGACTTTTTCTTGCGTCAGTCATCCTGCGCACGCTCAAAAACCTTCATTAACCTGCGGGAAGTCAGCACCCGACTGAAGCTGCCGCCGGGCGAGTATCTCATAGTCCCATCCACTTTTGAGCCCGGAAAAGAGGCCGATTTCGTCCTGCGAGTCTTCACTGAGAAACAGTCAGAAACTCAagaaatgGATGATGAGATTTCATTTAACCTGGAAGATGAAGAAGAGGTTTCAGAAGATGACATGGAAGACTCTTTCAAAAAACTGTTTGCGCAGCTGTCCGGAGAGGACATGGAGATTTCAGTTCACGAGCTCAGGACCATTCTGAACCGAGTGGTTGGCAAACACAGGGACTTGAAGACAGACGGGTTCAGTTTGGAGTCGTGCAGGTGCATGGTCAGCCTGCTGGATAAAGATGGCAGCGCTCGCCTGGGAATTGTGGAGTTCCAGATTCTGTGGAATAAAATCAGGAAGTGGCTGGGCATTTTTAGAAAGTTTGATCTGGATAAATCTGGCACGATGAGCTCGTATGAAATGCGCCTCGCCGTCGAGTCGGCcgGTTTTAAACTCAATAACAAGCTACATCAAATAATCGTGGCGCGATATTCTGATGGAGAAACGATCGACTTTGACAATTTCGTCTGTTGCCTGGTCAAGCTGGAGGCCATGTTCAggACTTTTAGAGAGCTGGACAAAGAGGGTTCAGGCGTCGCAGAGCTCAATGTTAGTGAGTGGCTGTACCTGACCATGTGTGGTTGATGTGTGGAGATCATATGGTGAAGGGCCAAAATCACTCCCTCAGTTGCAGCTTTAAGCCATTACACCCAAAGATCCCGGAGCAATACAGTACATACTGCCTTAAAACATCCATCATAAGCCTCACAATTAATATCCTCATTATGCAAGGCATGTTTAACACTTATAAACCACtaaatgttaagaaaaaatgtaatgcatcgTTTCGGAGAGCAACGTAACATAGCTTTATGATAAAGTGCATGCCACTAACATTATGCTGTAGGTGATTTTACTGTACCTCGCATATGTAGCTGAACTTAGCGTTTGAGGTTTGCACCactgataattaaaaatgtaactttcatttgattttgttcaGAGTGTGACTTTGATAGGAGTTACGATCACTGTGATTTGACGTGCTATTATTTATAGAAGAATAGCTTGCGTTCTTACAGGATATTCAGGGAATTgttctaaatattttgttttatgctgcTTGTTAATTTAGGGAAGAGAAAATAAAGGATAAATATACCTTC
>XM_043222508.1
GGCGTGACCGTGCACTGCGGTACCCTGATTGTTGCGTCCCTTCTGCACTCGTCTGTTCAtcattctcttttttccccGCTATTTTAAAACGCACCAGCTGGGCTGATAATCACAGTGACAACTAAACACTGCTCGCGGCCCACACAAGGAACCTAAGTATGTATTCCATCGGAGGAGTGTCGTCGCGTATTTACAAGGAACGCCTGCAGGCAGAAGGGATGGGAAGCAATGACAATGCGGTCAAGTTCCTGAACCAGGACTACGAGGAGCTGAAGAGAGAGTGTCTGGAGGGCGGCAGGCTGTTTGAGGACCCCTGCTTCCCCGCCGTGCCACAGTCACTGGGCTTCAAGGAGCTCGCGCCAAACTCCTCCAAAACACGCGGCGTGCAGTGGTTAAGACCCTCTGAGCTGTCAAATAACCCTGAGTTCATAGTGGGCGGAGCCACACGTACAGATATTTGCCAGGGGGCCCTAGGGGACTGTTGGCTGTTAGCTGCCATCGCGTCCCTGACTTTAAACGACAGGCTGCTTCACAGAGTTGTACCTCATGGACAAAGCTTTACGGATGAGTATGCCGGCATCTTCCACTTCCAGTTCTGGCAGTTTGGCGAGTGGGTGGACATTGTGATCGATGACCGTTTGCCAGTGAAGGATAAAGAGCTGATGTTTGTTCACTCGGCAGAGGGAAATGAGTTTTGGAGCGCCCTGCTGGAAAAAGCCTATGCCAAGCTAAATGGCTCATATGAAGCTCTTTCGGGAGGATCCACCACCGAAGGCTTCGAGGACTTCACGGGTGGAGTAGCGGAGATGTATGAGCTGTGTAATGCTCCCAAAGATTTGCCCCGCATCATTGCCAAAGCCTTGGAGAGAGGCTCACTGTTGGGCTGCTCTATTGATATCACCAGTGCCTTTGATATGGAGGCTGTAACCTTTAAGAAGCTGGTGAAGGGGCATGCATACTCCGTCACGGGTCTCAGAGAGGTGAATTTCCGTGGCAGCAGAGAGAGGCTCATCCGCATCCGAAACCCTTGGGGGCAAGTTGAGTGGACGGGGGCTTGGAGTGACAATTCTTCTGAGTGGAATGGGATTGATCCAGCAGAAAGAGAGGAGATGAACAACCACATGGAAGATGGCGAGTTCTGGATGTCATTTCAAGAGTTCAAACGTCAGTTTTCTCGCCTGGAGATCTGTAACCTCACGCCGGACGCTCTGAGTGAAGACTCTCTTAATTTCTGGAACACGATTAAATTTAACGGCACCTGGAGGAGAGGAAGCACAGCGGGGGGCTGCAGGAACCACCCCAatacATTCTGGATAAACCCTCAATATAAGATCACGCTGCTGGAGGAAGATGATGATCCTGAAGATGATGAGGTGGCCTGCAGCTTCCTGGTGGCCTTGATGCAGAAGGACAGGCGACGTTACCGCAAGCAAGGGCAGGACATGCACACCATCGGCTTCGCCTTATATAAGGTCCCAGAAGAGTTCAGTGGTTCCCAGAGCATTCACCTCAAGAAGGACTTTTTCTTGCGTCAGTCATCCTGCGCACGCTCAAAAACCTTCATTAACCTGCGGGAAGTCAGCACCCGACTGAAGCTGCCGCCGGGCGAGTATCTCATAGTCCCATCCACTTTTGAGCCCGGAAAAGAGGCCGATTTCGTCCTGCGAGTCTTCACTGAGAAACAGTCAGAAACTCAagaaatgGATGATGAGATTTCATTTAACCTGGAAGATGAAGAAGAGGTTTCAGAAGATGACATGGAAGACTCTTTCAAAAAACTGTTTGCGCAGCTGTCCGGAGAGGACATGGAGATTTCAGTTCACGAGCTCAGGACCATTCTGAACCGAGTGGTTGGCAAACACAGGGACTTGAAGACAGACGGGTTCAGTTTGGAGTCGTGCAGGTGCATGGTCAGCCTGCTGGATAAAGATGGCAGCGCTCGCCTGGGAATTGTGGAGTTCCAGATTCTGTGGAATAAAATCAGGAAGTGGCTGGGCATTTTTAGAAAGTTTGATCTGGATAAATCTGGCACGATGAGCTCGTATGAAATGCGCCTCGCCGTCGAGTCGGCcgGTTTTAAACTCAATAACAAGCTACATCAAATAATCGTGGCGCGATATTCTGATGGAGAAACGATCGACTTTGACAATTTCGTCTGTTGCCTGGTCAAGCTGGAGGCCATGTTCAggACTTTTAGAGAGCTGGACAAAGAGGGTTCAGGCGTCGCAGAGCTCAATGTTAGTGAGTGGCTGTACCTGACCATGTGTGGTTGATGTGTGGAGATCATATGGTGAAGGGCCAAAATCACTCCCTCAGTTGCAGCTTTAAGCCATTACACCCAAAGATCCCGGAGCAATACAGTACATACTGCCTTAAAACATCCATCATAAGCCTCACAATTAATATCCTCATTATGCAAGGCATGTTTAACACTTATAAACCACtaaatgttaagaaaaaatgtaatgcatcgTTTCGGAGAGCAACGTAACATAGCTTTATGATAAAGTGCATGCCACTAACATTATGCTGTAGGTGATTTTACTGTACCTCGCATATGTAGCTGAACTTAGCGTTTGAGGTTTGCACCactgataattaaaaatgtaactttcatttgattttgttcaGAGTGTGACTTTGATAGGAGTTACGATCACTGTGATTTGACGTGCTATTATTTATAGAAGAATAGCTTGCGTTCTTACAGGATATTCAGGGAATTgttctaaatattttgttttatgctgcTTGTTAATTTAGGGAAGAGAAAATAAAGGATAAATATACCTTC

Function

NR:

description
PREDICTED: calpain-1 catalytic subunit-like isoform X1

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222506.1 True 2896 mRNA 0.48 22 12659174 12670690
XM_043222507.1 False 2874 mRNA 0.48 21 12659174 12670694
XM_043222508.1 False 2794 mRNA 0.48 23 12659174 12670690

Neighbor

gene id symbol gene type direction distance location
sde2 sde2 coding downstream 1026 12653941 ~ 12658148 (-)
wdr83 wdr83 coding downstream 5566 12650198 ~ 12653608 (-)
yju2b ccdc130,LOC107655383,LOC107569130,LOC107722659,LOC107659306 coding downstream 17845 12634970 ~ 12641329 (-)
LOC122327652 LOC107755339,LOC107655386,LOC107722668,LOC107659332,LOC107565182,LOC107755338 coding downstream 25179 12616316 ~ 12633995 (-)
LOC122327651 c3b.2,c3b.1,LOC107659332,LOC107755338,LOC107655386,LOC107565182,LOC107569121,LOC107755339,LOC107722668 coding downstream 43646 12598143 ~ 12615528 (-)
capn2b capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344 coding upstream 113 12670807 ~ 12681564 (-)
b3galt11 LOC107755332,LOC107565188,LOC107659304,LOC107742103,LOC107655348,LOC107566034 coding upstream 68029 12738723 ~ 12746888 (-)
LOC122327893 LOC107755333,LOC107659309,LOC107565190,LOC107655328,LOC107742102,LOC107566033 coding upstream 79564 12750258 ~ 12751462 (-)
b3galt10.1 LOC107755334,LOC107659303,LOC107565179 coding upstream 83103 12753797 ~ 12756479 (-)
glis2a glis2a,LOC107755347,LOC107566676,LOC107659323,LOC107742086,LOC107566055 coding upstream 86017 12756711 ~ 12771161 (-)
G152351 NA non-coding downstream 114047 12544901 ~ 12545127 (-)
G152341 LOC107659297,LOC107716435,LOC107569129,LOC107715742 non-coding downstream 179722 12474768 ~ 12479452 (-)
G152340 NA non-coding downstream 224218 12434581 ~ 12434956 (-)
G152339 NA non-coding downstream 232202 12426756 ~ 12426972 (-)
G152333 LOC107715704,LOC107655331,LOC107659303,LOC107570368 non-coding downstream 233086 12418358 ~ 12426088 (-)
G152363 NA non-coding upstream 12396 12683090 ~ 12683385 (-)
G152386 NA non-coding upstream 77528 12748222 ~ 12748440 (-)
LOC122327774 NA non-coding upstream 273600 12944294 ~ 12953144 (-)
G152454 NA non-coding upstream 331679 13002373 ~ 13002884 (-)
G152463 NA non-coding upstream 366685 13037379 ~ 13037599 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other downstream 90447 12560843 ~ 12568727 (-)
polr3f polr3f,LOC107655353,LOC107715715 other downstream 295779 12357683 ~ 12363395 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other downstream 513599 12142842 ~ 12145575 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other downstream 609636 12045469 ~ 12049538 (-)
LOC122327182 NA other downstream 814032 11841588 ~ 11845142 (-)
cxcl12b cxcl12b,LOC107566036,LOC107755354,LOC108440693,LOC107659313,LOC107566675 other upstream 235439 12906133 ~ 12914243 (-)
si:dkey-222p3.1 NA other upstream 527340 13198034 ~ 13202269 (-)
col8a1b col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107571642,LOC107667898,LOC107720377,LOC108436628 other upstream 708995 13379689 ~ 13409999 (-)
LOC122327865 si:ch211-79m20.1,LOC107602672,LOC107691164,LOC107717652,LOC107559552,LOC107720370,LOC107667897,LOC107736246 other upstream 907107 13577801 ~ 13689619 (-)
adra2a adra2a,LOC107602669,LOC107717662,LOC107720367,LOC107667886,LOC107559550 other upstream 1154675 13825369 ~ 13829699 (-)

Expression


Co-expression Network