LOC122327288 (capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344)


Basic Information

Item Value
gene id LOC122327288
gene name capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11804815 ~ 11815578 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222517.1
GGAAAGTTTGGGGCGGAGAGTCGCGGTGAACTAAGTTGAAGGATCGAGACGTTTTGACATTTCTCTGATATCGTTTGGGCTCCTCGgaagcggaaaaaaaaaatgtcaggagTCGCCTCAACCCTGGCCAAGAAGAGAGCGCAGGCTGCGGGCTTCGGGACTAACGCCAATGCCAGCAAATACCTGAACCAGGACTACGAGGCGCTCAGGAGACAGAGCCTCGGCGCGGGGACCCTGTTCTCGGACCCGTATTTCCCAGCCGCACCCGAATCCCTGGGCTTTAAAGAACTCGGACCCAGCTCGTACAAAACAAGAGGAATAACCTGGAAGAGACCTCGGgAGCTGTGCTCAAATCCACAATTCATCGTCGGCGGAGCCACACGGACGGATATCTGTCAAGGAGCTCTGGGTGGTGTCTCCGAGCAAACAACGCAATTTACTGAGTCACAGATTCCTTCTCGACCTCTTCTCCTTAAATTAATACTTCAAACACGGGATATCTGTGACTGCTGGCTGCTAGCGGCCATTGCCTCTCTGACCCTGAATGAAGATGTTCTGGCGCGAGTGGTGCCCAATGGACAAAGCTTTAGTGACAATTATGCAGGAATCTTCCATTTCCAGTTCTGGCAGTTTGGGGAGTGGGTGGATGTCGTCATCGATGACCGGCTGCCGGTGAAAGACGGCGAACTGGTTTTTGTTCACTCCGCCGAGGGAAACGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCGAAGGTTAATGGGTGTTACGAAGCTCTGTCTGGAGGATCCACCAGCGAGGGTTTCGAGGATTTCACCGGAGGCATCGCTGAGAGCTACGAGCTGAGCAAAGCTCCTTCCAACATGTTTCAGATCATCCAGAAAGCCCTGGAGGCTGGTGCTTTGCTGGGCTGCTCCATTGATATCACTAGTGCGGCTGATTCAGAAGCCGTCACCCGTCAGAAGCTGGTGAAAGGCCACGCTTACTCGCTCACCGGGGCGACCGAGGTGAACTATCGTGGCCGCAGGGAGAAACTGGTTCGCATGCGCAACCCTTGGGGGCAGGTGGAGTGGACCGGAGCCTGGAGCGATGGttCATCCGAGTGGAACAACATCTCTTCGGAGCGGCCGAACGCCAGCGCCGAAGATGGAGAATTTTGGATGTCATTCACAGATTTTCTCAGCCAATACTCTCGTATTGAGATCTGCACCCTGACGCCGGATGCCATCACCAGCGATTCGGTTAAACACTGGGCCGTGACCAACCACGACGGCACATGGAGGAAAGGCTCCACCGCTGGAGGCTGCAGAAACAACCCTTACACATTCTGGATGAATCCTCAGTATGTGATTAAGCTGAACGAAGAAGATGATGATCCAGGTGATAACGAGGTAGGCTGCAGTTTCGTGGTGGGTTTGATCCAGAAGAACCGGCGGCGTCTGAGGAAATCTGGAGAGGACATGCACACAATCGGCTTTGCCATTTATGAGTTACCTTCACAGTTTCACGGTCAGCGTGAAGTGCACCTCGATAAGAACTTCTTCCTGACGCACGCTCAGAAAGCTCGCTCAGAGACTTTCATTAATCTAAGAGAGGTCTGCACGCGCTTCAAGCTGCCTCCTGGGGAGTACCTCGTCGTGCCGTCCACCTTCGAAGCCAACAAGGACGGAGACTTTTGCCTGCGCGtcttttctgaaaaacagaccGAAACACTACCGTGTGATGACCCTGTGGATGCTGAATTACCTGATGAGACTGTCTCAGACAGTCAAGTCGATTCTGGATTCAGAGGCATGTTCGTAAAACTCGCCGGAGCTGACATGGAAATCTCAGCCTCAGAGCTCTCGACTATCTTAAACAAAATCATCGCAAAACGAACTGACATAAAGACGGACGGCTTCAGTTTGGAGACCTGTCGTGTCATGGTGAACCTCATGGATGACAGCGGGAATGGAAAACTAGGTTTGGGAGAGTTCGCTACTCTGTGGAAGAAAATTCAGCGATACCTTGGAATTTACAAGAAGAATGACATGGATAATTCAGGAACAATAAGCACTCCAGAGCTGCGTTTGGCGCTGAAAGAAGCCGGTTTCACTCTTAATAACACTATATTCCAGCTACTGGTAGCACGTTACGGTGAGGCGGACATGACTCTCGACTTTGATAACTTTGTGGCCTGCCTCATGCGTCTGGAGATGATGTTCCGCGTATTCAAAAAGCTGGATCCCCATAAAAGTGGCTTCATTGAAATGGACTTTCAGCAGtggctGAACTTCACTATGATTTAGGGGAATCATCTCCAAACTCCAGAGCGAAAAAGGattacatgttttaaattgtatttactttcatttttttcagttgtttattgCACTTTCGACCAGTCTTACTTCCAAAGTGTTGCATGATTTTACTGCGTTTGACATTGGCACACTATTTTCGTTTACAAATGCAAGCATCcttaaacaaggagaatcttaaccactgtataataaaaaaaaagtgcgtgTGAATTGTTATGAACGTTTTCTCtcaaaatgtcataattaaacacttttgacACTGTA
>XM_043222518.1
GAAAGTTTGGGGCGGAGAGTCGCGGTGAACTAAGTTGAAGGATCGAGACGTTTTGACATTTCTCTGATATCGTTTGGGCTCCTCGgaagcggaaaaaaaaaatgtcaggagTCGCCTCAACCCTGGCCAAGAAGAGAGCGCAGGCTGCGGGCTTCGGGACTAACGCCAATGCCAGCAAATACCTGAACCAGGACTACGAGGCGCTCAGGAGACAGAGCCTCGGCGCGGGGACCCTGTTCTCGGACCCGTATTTCCCAGCCGCACCCGAATCCCTGGGCTTTAAAGAACTCGGACCCAGCTCGTACAAAACAAGAGGAATAACCTGGAAGAGACCTCGGgAGCTGTGCTCAAATCCACAATTCATCGTCGGCGGAGCCACACGGACGGATATCTGTCAAGGAGCTCTGGGTGACTGCTGGCTGCTAGCGGCCATTGCCTCTCTGACCCTGAATGAAGATGTTCTGGCGCGAGTGGTGCCCAATGGACAAAGCTTTAGTGACAATTATGCAGGAATCTTCCATTTCCAGTTCTGGCAGTTTGGGGAGTGGGTGGATGTCGTCATCGATGACCGGCTGCCGGTGAAAGACGGCGAACTGGTTTTTGTTCACTCCGCCGAGGGAAACGAGTTCTGGAGCGCCCTGCTGGAGAAGGCCTATGCGAAGGTTAATGGGTGTTACGAAGCTCTGTCTGGAGGATCCACCAGCGAGGGTTTCGAGGATTTCACCGGAGGCATCGCTGAGAGCTACGAGCTGAGCAAAGCTCCTTCCAACATGTTTCAGATCATCCAGAAAGCCCTGGAGGCTGGTGCTTTGCTGGGCTGCTCCATTGATATCACTAGTGCGGCTGATTCAGAAGCCGTCACCCGTCAGAAGCTGGTGAAAGGCCACGCTTACTCGCTCACCGGGGCGACCGAGGTGAACTATCGTGGCCGCAGGGAGAAACTGGTTCGCATGCGCAACCCTTGGGGGCAGGTGGAGTGGACCGGAGCCTGGAGCGATGGttCATCCGAGTGGAACAACATCTCTTCGGAGCGGCCGAACGCCAGCGCCGAAGATGGAGAATTTTGGATGTCATTCACAGATTTTCTCAGCCAATACTCTCGTATTGAGATCTGCACCCTGACGCCGGATGCCATCACCAGCGATTCGGTTAAACACTGGGCCGTGACCAACCACGACGGCACATGGAGGAAAGGCTCCACCGCTGGAGGCTGCAGAAACAACCCTTACACATTCTGGATGAATCCTCAGTATGTGATTAAGCTGAACGAAGAAGATGATGATCCAGGTGATAACGAGGTAGGCTGCAGTTTCGTGGTGGGTTTGATCCAGAAGAACCGGCGGCGTCTGAGGAAATCTGGAGAGGACATGCACACAATCGGCTTTGCCATTTATGAGTTACCTTCACAGTTTCACGGTCAGCGTGAAGTGCACCTCGATAAGAACTTCTTCCTGACGCACGCTCAGAAAGCTCGCTCAGAGACTTTCATTAATCTAAGAGAGGTCTGCACGCGCTTCAAGCTGCCTCCTGGGGAGTACCTCGTCGTGCCGTCCACCTTCGAAGCCAACAAGGACGGAGACTTTTGCCTGCGCGtcttttctgaaaaacagaccGAAACACTACCGTGTGATGACCCTGTGGATGCTGAATTACCTGATGAGACTGTCTCAGACAGTCAAGTCGATTCTGGATTCAGAGGCATGTTCGTAAAACTCGCCGGAGCTGACATGGAAATCTCAGCCTCAGAGCTCTCGACTATCTTAAACAAAATCATCGCAAAACGAACTGACATAAAGACGGACGGCTTCAGTTTGGAGACCTGTCGTGTCATGGTGAACCTCATGGATGACAGCGGGAATGGAAAACTAGGTTTGGGAGAGTTCGCTACTCTGTGGAAGAAAATTCAGCGATACCTTGGAATTTACAAGAAGAATGACATGGATAATTCAGGAACAATAAGCACTCCAGAGCTGCGTTTGGCGCTGAAAGAAGCCGGTTTCACTCTTAATAACACTATATTCCAGCTACTGGTAGCACGTTACGGTGAGGCGGACATGACTCTCGACTTTGATAACTTTGTGGCCTGCCTCATGCGTCTGGAGATGATGTTCCGCGTATTCAAAAAGCTGGATCCCCATAAAAGTGGCTTCATTGAAATGGACTTTCAGCAGtggctGAACTTCACTATGATTTAGGGGAATCATCTCCAAACTCCAGAGCGAAAAAGGattacatgttttaaattgtatttactttcatttttttcagttgtttattgCACTTTCGACCAGTCTTACTTCCAAAGTGTTGCATGATTTTACTGCGTTTGACATTGGCACACTATTTTCGTTTACAAATGCAAGCATCcttaaacaaggagaatcttaaccactgtataataaaaaaaaagtgcgtgTGAATTGTTATGAACGTTTTCTCtcaaaatgtcataattaaacacttttgacACTGTA

Function

symbol description
capn2b Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to be active in cytoplasm. Is expressed in several structures, including digestive system; germ ring; hatching gland; periderm; and polster. Orthologous to human CAPN2 (calpain 2).

NR:

description
PREDICTED: calpain-2 catalytic subunit-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K03853 CAPN2; calpain-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222517.1 True 2568 mRNA 0.50 22 11804815 11815578
XM_043222518.1 False 2474 mRNA 0.50 21 11804815 11815577

Neighbor

gene id symbol gene type direction distance location
LOC122327734 celf5a,celf5,LOC107675909 coding downstream 153993 10467127 ~ 11650822 (-)
LOC122327726 LOC107719667,LOC107699403,LOC107593325,LOC107676991,LOC107717979,LOC107586464,LOC100332608,LOC108270593 coding downstream 233137 11567017 ~ 11571678 (-)
tle5 aes,LOC107586404,LOC107593322,LOC107699415,LOC108430095,LOC108271216 coding downstream 339740 11440216 ~ 11465075 (-)
tle2b si:dkey-42p8.3,LOC107719559,LOC107676970,LOC107699414,LOC108271164,LOC108430094 coding downstream 378734 11382193 ~ 11426081 (-)
trnaq-uug_21 NA coding downstream 456364 11348380 ~ 11348451 (-)
LOC122327836 NA coding upstream 30288 11845866 ~ 11855677 (-)
LOC122327835 NA coding upstream 47217 11862795 ~ 11870285 (-)
rgs2 LOC107741538,LOC107564933,LOC107664962,LOC107560697,LOC107735525 coding upstream 214884 12030462 ~ 12032362 (-)
si:ch211-117l17.5 LOC107655356,LOC107715708,LOC107741540,LOC107564934,LOC107664973 coding upstream 224698 12040276 ~ 12043067 (-)
LOC122327260 LOC107664925,LOC107741564,LOC107655340,LOC107715693,LOC107564927,LOC107560680 coding upstream 235101 12050679 ~ 12053495 (-)
G151919 NA non-coding downstream 214892 11587661 ~ 11589923 (-)
G151904 NA non-coding downstream 253945 11550198 ~ 11550870 (-)
G151896 NA non-coding downstream 274205 11528098 ~ 11530610 (-)
G151893 NA non-coding downstream 281393 11522030 ~ 11523422 (-)
G151889 NA non-coding downstream 286674 11509400 ~ 11518141 (-)
G152223 NA non-coding upstream 177135 11992713 ~ 11993033 (-)
LOC122327268 NA non-coding upstream 177545 11993123 ~ 11997045 (-)
G152234 NA non-coding upstream 210534 12026112 ~ 12026795 (-)
LOC122327264 NA non-coding upstream 261163 12076741 ~ 12080117 (-)
LOC122327175 NA non-coding upstream 267929 12083507 ~ 12086914 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other downstream 117 11793573 ~ 11804698 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other downstream 314161 11465852 ~ 11490654 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other downstream 573566 11229974 ~ 11231249 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other downstream 616123 11174143 ~ 11188692 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other downstream 809863 10935052 ~ 10994952 (-)
LOC122327182 NA other upstream 26010 11841588 ~ 11845142 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other upstream 229891 12045469 ~ 12049538 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other upstream 327264 12142842 ~ 12145575 (-)
polr3f polr3f,LOC107655353,LOC107715715 other upstream 542105 12357683 ~ 12363395 (-)
LOC122328185 pdgfa,LOC107655387,LOC107716439,LOC107659307 other upstream 745265 12560843 ~ 12568727 (-)

Expression


Co-expression Network