mcm2 (mcm2,LOC107718478)


Basic Information

Item Value
gene id mcm2
gene name mcm2,LOC107718478
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3213764 ~ 3220492 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222582.1
TGGAGCATTTCGCGCGAAAAATCAGTCTTCCCGGGAAAAAGCCAGTCTACGGTCGAGTCGCTGCACAGGACGGACGTGAGAAGATGGCGGATTCATCAGAGTCGTTTCACATGGCCACCAGCCCCGGTCGTGGTTCACGGCGGGGTGACCTGACCTCCAGCCCCGGCAGAGACCTACCCCCGTTTGAGGATGAGTCCGAGGGGCTTCTGGGAGACAATATTGTTGACGAGGAGGATGGAGACGGAGAGGAGCTGATCGGAGATGGGATGGAGAGAGACTACCGTAACATCCCAGAACTGGACCGCTATGAAGCTGAGGGTCTAGATGAGGATGAAGACCTCAGTGAACTCTCTCCCAGTGCTCGGGCTGAAGCCGAAGCGGCTATGAGACGGCGCGACAGGGAACAGGGCCTTGGTATGGGCCGCATCGGACGCGGGCTTCTTTACGACAGTGAAGACGAAGACGACAAGCGTCCCACGAAGAGGCAGCGGGTTCTCGCAGAGAGGGCAGCCGAGGGCGTCGCGCTCGACGGTGAGGATGAGGAGATGATCGAAAGCATTGAGAACCTGGAGGACATGAAGGGCCACACGGTCCGGGAGTGGGTTTCAATGGCCGGCCCGCGACTAGAGATCTACCACCGCTTCAAGAACTTCCTACGCACACACGTGGACGAGCACGGGCACAATGTGTTCAAGGAGCGCATTAGCGACATGTGCAAAGAAAATAAGGAGAGTTTGCTGGTGAACTACGAAGAACTGGCTTCCAGGGAGCACGTGCTGGCGTATTTTCTGCCGGAGGCTCCCGCCGAGATGCTGAAGATCTTTGACGAACCCGCCAAAGAGGTGGTGCTGGCCATGTACCCCAAATACGACAGAATCGCACACGAGATCCACGTCCGCATCGGCAACCTGCCGCTGGTGGAAGAACTTCGATCTCTCAGGCAGCTTCACCTGAACCAGTTGATCCGTACCAGCGGTGTCGTGACCAGCTGCACTGGAGTTTTACCGCAGCTAGGTATGGTGAAATACAACTGTAACAAGTGTAACTTCATTTTGGGGCCCTTCTTCCAGTCCCAGAACCAGGAGGTGAAGCCGGGCTCCTGTCCCGAGTGTCAGTCGCTCGGCCCGTTCGAGATCAACATGGAGCAGACTGTGTACCAGAACTACCAGCGTATCACCATCCAGGAGAGTCCTGGCAAAGTGGCGGCGGGCCGCCTGCCTCGCTCCAAAGACGCCATCCTGCTGGCCGATTTGGTGGACACTTGCAAACCTGGAGATGAGATTGAGCTCACAGgaatctaccacaacaactacGACGGCTCTCTCAACATGGCTAATGGCTTCCCAGTCTTCGCTACTGTAATCCTGGCCAATCACATCGCCCGTAAGGATGAGGGCGTGGCCGTGGCGGAGCTCACCGATGAAGACGTCAAAGCCATCGTAGCTTTGTCCAAAGATGAACGCGTCGGAGAACGGATTTTCGCAAGTATCGGTCCTTCCATCTACGGGCACGAGGACATCAAACGTGGCCTGGCGCTTGCTTTGTTTGGCGGTGAAGCCAAGAATCCAGGCGGGAAGCACAAGGTGCGTGGAGATATTAATGTTCTCCTATGTGGAGATCCAGGCACAGCCAAGTCCCAGTTCCTGAAATACGTTGAGAAGGTTGCGAGTCGAGCAGTCTTCACTACAGGTCAGGGCGCTTCCGCCGTAGGTCTGACGGCTTACGTGCAACGCCATCCCGTGAGTCGAGAGTGGACGCTGGAGGCGGGGGCTTTGGTGCTGGCCGACCGTGGAGTCTGCCTCATTGACGAGTTCGATAAGaTGAACGATCAGGACAGGACCAGCATCCATGAAGCCATGGAGCAACAGAGCATCTCCATTTCTAAAGCTGGAATCGTAACATCGCTGCAGGCTCGCTGCACTGTCATCGCTGCCGCCAATCCTATCGGTGGGCGTTATGAtccctctctcactttctctgaAAACGTGGACCTGACGGAGCCCATCATATCTCGATTTGATGTTTTGTGCGTTGTAAGAGACACCGTCGACCCTGTGCAGGATGAAATGCTGGCTCGCTTCGTGGTGGGCAGCCACATCAAACATCACCCAAGCAACAAAGAAGGGGGCGTGGCCAGTCTAGAGGAGGTAGTGCTGCCAAACACCTTCGATGTCCCGCCCATCCCTCAGGAGCTGCTAAGGAAGTACATCATATACGCTAAAGAGCGTGTGCGACCAAAACTCAACCAGATGGACCAAGACAAGGTGGCTCGAATTTACAGCGACCTTCGAAAAGAGTCTATGGCCACAGGAAGTATCCCCATTACCGTGCGTCACATAGAGTCCATGATCCGCATGGCTGAGGCGCATGCCCGCATGCATCTGCGGGATTACGTGCTGGAGGATGACGTGAACATGGCTATTCGCGTCATGCTAGAAAGCTTCATTGACACGCAGAAGTTTAGCGTGATGAGGAGCATGCGGAAGacaTTCGCGCGGTATCTGGCGTTCAGACGGGACAACAACGAGCTGTTGCTGTTCATCCTGAAGCAACTGGTTTCCGAGCAGGTCGCGTATCAGCGCAACCGTTACGGAGCCCAGCAGGACACCATCGAGATTGCTGAAAAAGATCTGGTGGACAAGGCTCGACAGATCAACATCCACAACCTGTCTGCGTTTTACGACAGTGACCTGTTTCGCTCAAACAAATTCTCCCACGACGGCAAGAAAAAACTCATCGTGCAACAGTTCTAGGCGCTTGTTCTGGATTTGTTCACACGCAGTTGCGTCGTTTCCCGTGGACTTGTATATATTCTGTCATGAGGTTTTCAGACTAATCCTTACGAGGATTGAATAGGTTTTTGGTCCTTTCATGAACTTGTTACCGTAGTCGTTACGGTTGCGGTGACCCGCTTGGCTTATGCGGCCGTTTTGGCTGCACGTGAAATGATGTTCTTGAACTTTCTTTATCAGTGTCGCAGAAGTACTCCGTTTATTAAATttgtggtgtaaaaaaaaaaagaaaactaaaaaaactttttgtacTGTTATGTTCTGAACAATAAATCTTAAGCTGTATGTAA

Function

symbol description
mcm2 Enables chromatin binding activity. Acts upstream of or within regulation of cilium assembly; retina development in camera-type eye; and thymus development. Predicted to be part of MCM complex. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain neural rod; midbrain neural rod; optic vesicle; paraxial mesoderm; and thymus. Human ortholog(s) of this gene implicated in Alzheimer's disease and autosomal dominant nonsyndromic deafness 70. Orthologous to human MCM2 (minichromosome maintenance complex component 2).

NR:

description
PREDICTED: DNA replication licensing factor MCM2

GO:

id name namespace
GO:0006270 DNA replication initiation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K02540 MCM2; DNA replication licensing factor MCM2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222582.1 True 3082 mRNA 0.54 16 3213764 3220492

Neighbor

gene id symbol gene type direction distance location
podxl2 LOC107702650,LOC107566349,LOC107712169,LOC107698566,LOC107718457,LOC107549351 coding downstream 773 3196422 ~ 3212991 (-)
LOC122328126 LOC107702631,LOC107566362,LOC107698575,LOC107549383,LOC107712181 coding downstream 23881 3188034 ~ 3189883 (-)
LOC122327372 NA coding downstream 28291 3181114 ~ 3185473 (-)
LOC122327365 LOC107586973 coding downstream 36184 3170335 ~ 3177580 (-)
LOC122327516 NA coding downstream 43868 3166973 ~ 3169896 (-)
ccdc51 ccdc51,LOC107702652,LOC107712177,LOC107698574,LOC107718461,LOC107577765,LOC107549370 coding upstream 440 3220932 ~ 3223501 (-)
wu:fc11c11 LOC107702623,LOC107566345 coding upstream 18617 3239109 ~ 3243922 (-)
LOC122327520 LOC107694008,LOC107712191,LOC107566346,LOC107718469,LOC107698588,LOC107591183 coding upstream 31621 3252113 ~ 3253715 (-)
LOC122327437 NA coding upstream 52643 3273135 ~ 3277399 (-)
LOC122327353 NA coding upstream 60117 3280609 ~ 3286516 (-)
G149071 NA non-coding downstream 18960 3193288 ~ 3194804 (-)
G148927 NA non-coding downstream 110867 3102579 ~ 3102897 (-)
G148906 NA non-coding downstream 168347 3041452 ~ 3045417 (-)
G148889 NA non-coding downstream 229827 2874411 ~ 2983937 (-)
G149074 NA non-coding upstream 13180 3233672 ~ 3235759 (-)
G149076 NA non-coding upstream 21929 3242421 ~ 3242805 (-)
G149081 NA non-coding upstream 30757 3251249 ~ 3251471 (-)
G149111 NA non-coding upstream 129601 3350093 ~ 3353485 (-)
G149114 NA non-coding upstream 129962 3350454 ~ 3351474 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other downstream 148587 3051400 ~ 3065177 (-)
gpr35.2 NA other downstream 963203 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 1097581 2114320 ~ 2116183 (-)
G148613 NA other downstream 1549137 1661185 ~ 1664627 (-)
G148574 NA other downstream 1559424 1643710 ~ 1654340 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 3656 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 34904 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 105083 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 157540 3378032 ~ 3451429 (-)
G149102 NA other upstream 167768 3388260 ~ 3414711 (-)

Expression


Co-expression Network