ecm2 (ecm2,LOC107586919,LOC107658384)


Basic Information

Item Value
gene id ecm2
gene name ecm2,LOC107586919,LOC107658384
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5703301 ~ 5713732 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222603.1
CCTCTTTGTTTGAGTACAGTACCCTTCCTAGCCTAGTAATTAGGGCGCACAAAATCACCAAGTTCTTTCGCCTGAGAGAGGCAGTATCTTGTCTCGACCCTCATTTGACTGAAACTTTCAGAGACAGAACTGGAGAAGTTCTGCCCGAGCGAGTCCCGACTAAACGCTAGAGCAGCCCCTGtctgtttttgacatttatcaGCGTTCTTGCTGCGGagcagacgcacacacacttcttgCGTTGCTGGCAAATCCCACAGCTTTTGGGGAAAGAGCGGAAATATTTGGCCCCACAAAACCGCCCGAAACCAGTGGCTTCAACCATGAGACTAAACCTGATTCTGGCACTGTCACTTCTCGCCTGTCTGACCTTCAGCCTCGCAAAAGATCAGAGGCGTCCCTTGGCACGAGGTAGAAGACGAGGTGTTGGACCAAAACGAGCAAGAAAACAGACATCTAATACCGAAGCAGAAAGCAATGGACAAGATGGATCTGTTTTCATCGAGTCTTACAAGAACACAATGGAGCCAAAGCCAAACTACAAAGTGACTGCAGCAAAATCAGAGCACTGTTTATTTCGAGGCATCACCATGTACGATAAAACAGTGTGGTCGCCAAAGCCATGCGTGAATTGCCTGTGTTCCAATGGTGAGGTGGTCTGCGACCGAATACTGTGTCCCACCTTGCAGTGCCTACTCAAATTTCAACCAATCGGAGAGTGCTGCCCAATTTGCATTgacacagTTGTCGATGCCCCTGAGTTTTCCGGTGACCCTCCTTCGGCCAATGATCTCGGCGATCCCTATACCGAAATATCACAAAGCCAAAGAGATAAGAAAGAAACACTAAAGAAGGACGAAGAGGAACGGATTCACAAAAAAGATGCTGAACGCAAACAGAGGaagaagcagaagaaagaagaagcTGAGAGACAGAGGAAGTTAAAAGAGGCGAAAGAAGCCagagaaaaagaggaggagCTAAGAAGGCtaagagaggaggaagaggagagagcagcgactgcagaaagaaaaagaaggatggAAGAACAGCGGAGGGCTGAGGAGGACCGGGCTCGTAGGCTGGAGATGGAGCAAAAAGAGATGATAAGAGCTCTGGAAGAAGTAGCCGAACATGCCCAGGAAGGACTCCGTGGAGACGAGGCCATGGTTTGGTTGAGGGGGGACGTTTTCCAAATGCCACCAGTGTCACCAACGAGAGCAGCACATCCTCAACCTCCTCTCTTAGCTCTTCAAGAGCCAACCGAACCAGACGAGGATGACCATGAACTGGGCAAGGAAGGCCCTGAACCAGAGGAGGAATCTGAGATGGTTACCACATTGCTGCCTCCAGGTTGTTCGATCTCTGACGTCACGATCACCTGTGAAAATGCTAAACTGATGGGTATACCTCCGCTGTCCATCCCTGAGCTCAAATCACTCAGTTTACAGGGCAATGAAATCAAAACCATCCCTGCTGGAGCATTCAATGGCATTCCCAACTTAGAGTGGATAGACTTGGGGAAAAACAAGATTGTGTCATCTGGCATAGGCCCACACGCATTTAAaGGTCTTAAATTCCTGTCTCGCCTGTACATGGATGGAAACCTTCTGGAACAAATTCCCTCTGAGCTCCCATCAACACTCCAGGAGCTCAAGATAAATGAGAACAATCTAAAGGAAATTGAGGAAAACAGCTTTGAAGGTCTCAGCAGTCTGGTTACTTTGGAAATGGAGGGGAACTTGCTCAGTGAAGGTAACATGAATCCACAGGCCTTTAAGCCCCTCAAAGAGCTGTCTTACCTTCGCTTGGGCAGAAACCATTTCCGTACCATTCCTCAGGGCCTACCTGCATCTCTGCTGGAGTTGTACCTCGAAAACAATCTGATCGAAGAAATCTCTGAAACGGCGTTCAACCACACCACAAACATCAACCTCGTTGTGCTAAGACATAATAAATTAGATGAGTCAAGCATTGCACCTTTAGCCTGGATTAATCACAGGAACCTGGAATCTGTAGATCTCTCGCACAACAACTTCTACCTGGTTCCATCCTTCATGCCGAAGTCGCTGGTTCACCTGGTGCTGGCTGGGAATCAGATTGAACGCATTCCAGGATACGTGTTCGCACACATGGAGCCTGGCCTGGAGTACCTCTACCTCTCTTACAACAAGCTGGACGGTGACGGCATCGAGCCAGAGTCCTTCTTTGGCACCTTGGGCACTATGACCGAACTCTGTCTAGACCATAACCAGCTTACGTCTATTCCGGTGGGAATTAATGAGATGACAACTCTACATTTCCTACGacttaacaacaacaaaataagGCAGATATCAGAAGATGCCATCTGTGACCCTTCGAACGAGGACGACTCTCATCTAGTTGCCCTTCGCCTTGAGAATAATTTCCTTGACCCTCGGAAAATCCCACCCACGGCTTTCTCCTGTGTCCGTTCCTACTCTAGTGTTGTTTTAAAGCCTCAAAGGATTAAGTAACTGCAATCTTGAGTTCTGTTATTACGAACCACTAAAGAccaaagttaaatataaaactgaagTTGATTCCTGTGAAACGTGCAGTTAGGTATAAAATGGTAAAGGTAATCATCTTTTTGTCCCAAAAAATTGCATTGAATTTCTAATCGGCATGTATATTATCGGTCTTGCTTCATTAGCTTTTATAATCTTCCATTTAGGAGTCAGATAAGACTGAACATGATCACCACCTCGAGGCTCATAGCAGAACGCTGTCGTTGTTTGTGCCTGTCTAGACGTGTCTGTAAGATGCATGAATCAACTGTATAATAGTTCAAGAGGAAAAAAGTAGCAGACTATAactttgttttctgtgttgagATGTATCGTATTCCTGTCATAACAGTATTAAGTTTGTCTGTCGTagtgaagaaaaacagaatgcaTGGCTTTTCTTAAGTGTTTATAAAAGAAAGCAGCCAAAATCAACCTGCTTACgtaacgattttttttttactaagacAGGACCAACCAATAAAGCACGTTTACTACTGAGA
>XM_043222604.1
CATTCTGCATATCGACATGTACCTGAACTCATTCAAACATTTCACTGAAAGAACCGACGCATTTGAGCATATGTAGGATTTCAATGATGATTTGAGTGTTGCAACATCATCCAAAACCTTTTTCAGCCAAGTcttgcaaattatatttaagttcTAAATGACTGTTTTTACGAGATGAATTGTGGCTGCAACGAACAGAACTGACTTaattgaccataaacactattaataaaacttgaaaaaacCTAATGAATAGCAATATGTGCGCACATATGGCTTTGTTGGAAGGTTTTAGATCATTTAATATGGCACATTGGAATATCTGGAGTCAATGACGTTGATTCTAACATTTATACaaacctttctaaaaaaaaaaactagcacgAATGAGATTTAGTTCCTACCTGAGAGTTTAAATGTCATCAAGGCCAAGTCTGTTCTTACTAAAAGTTGTGCTATGATTGTTACATTTGAACATAATACTTAAAACCTCCTGCAGTCCTCTAAACACCACCATCACGTACCCAAATAACAGTTTTACTCTTTACTCTTACAGTAAAGGTGTTAAAGGCTACTATTCCATCAAAGCTGTCTGGTTCTCCACGGTCAAGCTGTTAAAGGCTGGATCACCTGTGATGCCGCTTCAACCATGAGACTAAACCTGATTCTGGCACTGTCACTTCTCGCCTGTCTGACCTTCAGCCTCGCAAAAGATCAGAGGCGTCCCTTGGCACGAGGTAGAAGACGAGGTGTTGGACCAAAACGAGCAAGAAAACAGACATCTAATACCGAAGCAGAAAGCAATGGACAAGATGGATCTGTTTTCATCGAGTCTTACAAGAACACAATGGAGCCAAAGCCAAACTACAAAGTGACTGCAGCAAAATCAGAGCACTGTTTATTTCGAGGCATCACCATGTACGATAAAACAGTGTGGTCGCCAAAGCCATGCGTGAATTGCCTGTGTTCCAATGGTGAGGTGGTCTGCGACCGAATACTGTGTCCCACCTTGCAGTGCCTACTCAAATTTCAACCAATCGGAGAGTGCTGCCCAATTTGCATTgacacagTTGTCGATGCCCCTGAGTTTTCCGGTGACCCTCCTTCGGCCAATGATCTCGGCGATCCCTATACCGAAATATCACAAAGCCAAAGAGATAAGAAAGAAACACTAAAGAAGGACGAAGAGGAACGGATTCACAAAAAAGATGCTGAACGCAAACAGAGGaagaagcagaagaaagaagaagcTGAGAGACAGAGGAAGTTAAAAGAGGCGAAAGAAGCCagagaaaaagaggaggagCTAAGAAGGCtaagagaggaggaagaggagagagcagcgactgcagaaagaaaaagaaggatggAAGAACAGCGGAGGGCTGAGGAGGACCGGGCTCGTAGGCTGGAGATGGAGCAAAAAGAGATGATAAGAGCTCTGGAAGAAGTAGCCGAACATGCCCAGGAAGGACTCCGTGGAGACGAGGCCATGGTTTGGTTGAGGGGGGACGTTTTCCAAATGCCACCAGTGTCACCAACGAGAGCAGCACATCCTCAACCTCCTCTCTTAGCTCTTCAAGAGCCAACCGAACCAGACGAGGATGACCATGAACTGGGCAAGGAAGGCCCTGAACCAGAGGAGGAATCTGAGATGGTTACCACATTGCTGCCTCCAGGTTGTTCGATCTCTGACGTCACGATCACCTGTGAAAATGCTAAACTGATGGGTATACCTCCGCTGTCCATCCCTGAGCTCAAATCACTCAGTTTACAGGGCAATGAAATCAAAACCATCCCTGCTGGAGCATTCAATGGCATTCCCAACTTAGAGTGGATAGACTTGGGGAAAAACAAGATTGTGTCATCTGGCATAGGCCCACACGCATTTAAaGGTCTTAAATTCCTGTCTCGCCTGTACATGGATGGAAACCTTCTGGAACAAATTCCCTCTGAGCTCCCATCAACACTCCAGGAGCTCAAGATAAATGAGAACAATCTAAAGGAAATTGAGGAAAACAGCTTTGAAGGTCTCAGCAGTCTGGTTACTTTGGAAATGGAGGGGAACTTGCTCAGTGAAGGTAACATGAATCCACAGGCCTTTAAGCCCCTCAAAGAGCTGTCTTACCTTCGCTTGGGCAGAAACCATTTCCGTACCATTCCTCAGGGCCTACCTGCATCTCTGCTGGAGTTGTACCTCGAAAACAATCTGATCGAAGAAATCTCTGAAACGGCGTTCAACCACACCACAAACATCAACCTCGTTGTGCTAAGACATAATAAATTAGATGAGTCAAGCATTGCACCTTTAGCCTGGATTAATCACAGGAACCTGGAATCTGTAGATCTCTCGCACAACAACTTCTACCTGGTTCCATCCTTCATGCCGAAGTCGCTGGTTCACCTGGTGCTGGCTGGGAATCAGATTGAACGCATTCCAGGATACGTGTTCGCACACATGGAGCCTGGCCTGGAGTACCTCTACCTCTCTTACAACAAGCTGGACGGTGACGGCATCGAGCCAGAGTCCTTCTTTGGCACCTTGGGCACTATGACCGAACTCTGTCTAGACCATAACCAGCTTACGTCTATTCCGGTGGGAATTAATGAGATGACAACTCTACATTTCCTACGacttaacaacaacaaaataagGCAGATATCAGAAGATGCCATCTGTGACCCTTCGAACGAGGACGACTCTCATCTAGTTGCCCTTCGCCTTGAGAATAATTTCCTTGACCCTCGGAAAATCCCACCCACGGCTTTCTCCTGTGTCCGTTCCTACTCTAGTGTTGTTTTAAAGCCTCAAAGGATTAAGTAACTGCAATCTTGAGTTCTGTTATTACGAACCACTAAAGAccaaagttaaatataaaactgaagTTGATTCCTGTGAAACGTGCAGTTAGGTATAAAATGGTAAAGGTAATCATCTTTTTGTCCCAAAAAATTGCATTGAATTTCTAATCGGCATGTATATTATCGGTCTTGCTTCATTAGCTTTTATAATCTTCCATTTAGGAGTCAGATAAGACTGAACATGATCACCACCTCGAGGCTCATAGCAGAACGCTGTCGTTGTTTGTGCCTGTCTAGACGTGTCTGTAAGATGCATGAATCAACTGTATAATAGTTCAAGAGGAAAAAAGTAGCAGACTATAactttgttttctgtgttgagATGTATCGTATTCCTGTCATAACAGTATTAAGTTTGTCTGTCGTagtgaagaaaaacagaatgcaTGGCTTTTCTTAAGTGTTTATAAAAGAAAGCAGCCAAAATCAACCTGCTTACgtaacgattttttttttactaagacAGGACCAACCAATAAAGCACGTTTACTACTGAGA

Function

symbol description
ecm2 Predicted to enable collagen V binding activity and heparin binding activity. Predicted to be involved in extracellular matrix organization and positive regulation of cell-substrate adhesion. Predicted to be active in extracellular matrix. Is expressed in apical ectodermal ridge pectoral fin bud; fin fold pectoral fin bud; median fin fold; pectoral fin; and pharyngeal arch. Orthologous to human ECM2 (extracellular matrix protein 2).

NR:

description
extracellular matrix protein 2

GO: NA

KEGG:

id description
K08119 ECM2; extracellular matrix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222603.1 False 3034 mRNA 0.46 10 5703301 5713732
XM_043222604.1 True 3360 mRNA 0.44 10 5703301 5711871

Neighbor

gene id symbol gene type direction distance location
aspn aspn,LOC107756000,LOC107658386 coding downstream 1834 5695649 ~ 5701467 (-)
omd omd coding downstream 9537 5689336 ~ 5693764 (-)
ogna ogn,LOC107658388,LOC107756001,LOC107586921 coding downstream 16267 5681591 ~ 5687034 (-)
stab1 stab1,LOC107745410,LOC107658393,LOC107653171,LOC107721010,LOC107593096 coding downstream 68502 5607044 ~ 5634799 (-)
rbck1 LOC107658397,LOC107745403,LOC107653168,LOC107573567,LOC107586913,LOC107720991 coding downstream 145062 5550629 ~ 5558239 (-)
ippk ippk,LOC107755999,LOC107658385 coding upstream 6321 5720053 ~ 5731405 (-)
si:dkey-42i9.4 si:dkey-42i9.4,LOC107586924,LOC107756006,LOC107704447,LOC107593103,LOC108431510 coding upstream 18651 5732383 ~ 5733542 (-)
shisa10.1 LOC107695620,LOC107756007 coding upstream 31458 5745190 ~ 5751082 (-)
LOC122327508 NA coding upstream 40663 5754395 ~ 5757178 (-)
bap1 bap1,LOC107704441,LOC107695622,LOC107755981 coding upstream 50306 5764038 ~ 5772073 (-)
G150126 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 non-coding downstream 47925 5654051 ~ 5655376 (-)
G150184 NA non-coding downstream 98883 5604157 ~ 5604418 (-)
G150125 LOC107586915,LOC107745408,LOC107658396,LOC107721006,LOC107593072 non-coding downstream 120260 5579470 ~ 5583041 (-)
G150161 tbc1d20,LOC107658381,LOC107586998,LOC107573569,LOC107653176,LOC107720987 non-coding downstream 157533 5545268 ~ 5545768 (-)
G150121 NA non-coding downstream 190334 5508570 ~ 5512967 (-)
G150152 NA non-coding upstream 109197 5822929 ~ 5823913 (-)
G150232 NA non-coding upstream 137553 5851285 ~ 5851890 (-)
G150233 NA non-coding upstream 140469 5854201 ~ 5854403 (-)
G150234 tmprss9,LOC107704409,LOC107731339,LOC107593090,LOC107695615,LOC107586983 non-coding upstream 141053 5854785 ~ 5855167 (-)
G150271 NA non-coding upstream 431146 6144878 ~ 6155016 (-)
nol8 LOC107586918 other downstream 30492 5661741 ~ 5672809 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other downstream 51142 5638138 ~ 5652159 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other downstream 161221 5538556 ~ 5542080 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other downstream 170492 5527230 ~ 5532809 (-)
LOC122327354 NA other downstream 549445 5145926 ~ 5153856 (-)
LOC122327537 NA other upstream 44274 5758006 ~ 5763982 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other upstream 145615 5859347 ~ 5861332 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other upstream 275765 5989497 ~ 5992758 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other upstream 522520 6236252 ~ 6236865 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other upstream 568724 6282456 ~ 6285580 (-)

Expression


Co-expression Network