sass6 (sass6,LOC107756018,LOC107695611,LOC107731314)


Basic Information

Item Value
gene id sass6
gene name sass6,LOC107756018,LOC107695611,LOC107731314
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5839748 ~ 5846930 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222613.1
CGGGAGCGAAGCGCGAAAAAACAAACCAGCAAATGATTCTTCCTCCAGCGTTCAAAAAAACACGAATAAACGGCTATTTTCTTATGATTGATATCGATTTGGGGGTTATTATATGAACTCGAAATGACGGAATTACTTTTTAACAAGAGGTTACAGGTCTTCGTGAAGAATAAAGATACCGATGAGAGACGTTCAGTCATTCGTATAAGCATTGAACTGCAGTCTTCATCAAATCCTGTTCATAGAAAGGATTTGGTTGTACGGTTGACGGATGATActgatctttattttttatacaaccTTGTCATATCAGAAGATGATTTTCAGAGTTTAAAGGTACAACAAGGGCTTTTAATAGACTTCACATCATTCCCGCAAAAATTTATCGACTTGCTCGAGCAGTGCATCTCCGAACAGGACAAAGAAAACCCACGGTTTCTCTTGCAGCTCACGTCTGCTTCATCGGCGTTTGATCACAGTCCTTCGAACCTTAACATCGTGGAGACGAACGCTTTTAAGCACCTCACACATCTCTCTCTGAAACTGCTGCCGGGATCTGATACGGATATTAAGAAGTATCTGGCCATCTGTCTGTCCAGCGTTAAGgaGGAAAAGCAGGGGTTGGAACAAAAGCTGAGAAAGACCGAGGAAGATCTGACCAGACAGCTAAATTATGCGCAGCAAACCCTGTCTGAGAAAAGTCGCGAGCTGGACAAACTGCGATCTGAATGGACGTCACAAACGACCTCTCTGTCCAGCAGACACATGCAAGATCTCACAGCTGAGCGAGAAAAAGCTCTCGAGACCCAAGCCCGTCTGCAGCAGCAGAACGATCAGCTGCGTCAGGAGCTCGAGTCGTCTCATCACAGAAGCACCCAGCAGCTCCAAACCAAAGTCTCCGAGCTGGAGACGGCCAACAGAGAGCTCACCGACAAGAAATACAAGAGCGACTCCACCATCCGAGACCTCAAAGCCAAGCTGGCCAGCCTGGAAGAGGAGTGTCAGCGGTCGAAGCAGCAGGTCCTGTCGCTCAGGAGAGAGAACGGCGCCCTCGATGCCGAATGCCACGAGAAAGAGCGCCTGGTGAACCAGCTGCAGACGCGAGTGGCCGTCTTCGAGCAGGAGATCAAAGATAAAGACCAGCTCGTGCTGCGCACCAAAGAAGTGCTGGAGGCCACGCAGCAGCAGAAGAACTCTGTGGAAGGAAATGTTGAAAGCAAGCAGGTTCAGATCGGCAAGCTGGAGGCCACGGTGAAGTCCCTGTCGGAGGAGCTCATCAAGGCGAACGGCATCATCAAGAAGCTGCAGGGCGATCTGAAGGCGCTGGTGGGGAAGATCAAGGTGAAGAACAGCGTGACGGTGTCTCAGGAGAAGATCCTGCAGGAGACCACCGAGCGACTGCAGCGGGAGCAGAGAGAGCTGCAGGACGCCCAACAACGGCTCCGGCAGAAAGAGGACGAGGTAATAAAAGTGAAGGAACAGTTGGACGCTGCGGTTCAGAAACTGGACGAGAGCAGGGAAGTGTTAAAAACCAATGAGAACGTTATAACGTGGCTGAACAAGCAGCTGAATGAGAACCAGCTCTCTCGGAAACAGGAAACGTTAGGAGTGTTCGAGACTCCCGCCGCGGCTCTGAGAACAGGAAGTGTTCCTCACAATATGCTTGATAGCAAAGGCTTCCCCTCGTCTTTGGGACAGGGCTTCCCCATCACCTCTACGATTAACTCCAAAtatcctcttcctctttcctgCGTGAGCTCAGGACCTCGCTCTGTCCTGTCAGCACACAATCAGACGTCTGGACCAAAGGTCCAGTTTAACCCCATGAGTGTGAAATCTTCGTCAGCAGATGTTAGTCCCACCGCTCTCTCCCAGCCCGCCCATAAAGAGAACGGAGAACCTGTTGGTCTGGACTCCAAGTACTTTGAGAGAAGAGATGACAGCATTCCTCTCCGTGGCCTTCTACCCAGCATGCATCTCAACAGAGAAGTCCCTAAGCCTTTGAACACGGCTGGAGCGAAACCAACGGCGTCCGCGTATTTCCCAGGATGACCACGAGCAGCAGTTTAGACTCTATTCACCACTACGTTGTGAGTAAACCAACGCCACCAATGAGATGGAAATCCATTGTAGATCATATTCACGTTTGTTTAATATGTCttccatttaaaacattttatttttaaactcgTTTCTCTACGCGTTTAACATGGAAACCGGTTAttgccacagaataaaaaaaaaactgcaattttaCGAAAAAAGGCATCTAGAAAGAATTGCGGTTTTAAATCTTGAGGTCCGAATTGCggttgtttttataatatcatcaacttttactttttctgtGACAGGAGTTCTGAGTTATCCTGCGGTTCTGACTTTTAACTTGGAattctgttaaatataaatctaaaacattGAAAGGTAAAAAgtcttttgttagttttttttacgtttcatAGTGGAAGCAACAAAATGGTGGaatataaactcagaatcacaaggaaaaaagtaaaaattatgagCAGAGACAGTCGTTACCTTTATTTTGCGGCGTAACGGGTTTCCATAGTTGACGACGAGTTTTTTTGAGCGTTAGCATGGAACTAATTTATCAGTAATAATGGTGCTAAGTTTTTGTCCTTTAAGTCTGTCTCCTCGGTTGATCGCGCTGCGCAAAGACCATCTCGAACGAACTTTTGCCAAACTTTTAGAGAGACAGTGTGGTTTGCTGTGTAAaactgtatataatttattgtgtgtacatttctatatttttgtatttatggtTAACTATAATAAACTTTGTAATCTGTTTTATCGTGGA

Function

symbol description
sass6 Acts upstream of or within several processes, including embryonic cleavage; microtubule cytoskeleton organization; and spermatogenesis. Located in centrosome. Is expressed in blastomere and unfertilized egg. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 14. Orthologous to human SASS6 (SAS-6 centriolar assembly protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007283 spermatogenesis biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051298 centrosome duplication biological_process
GO:0040016 embryonic cleavage biological_process
GO:0000280 nuclear division biological_process
GO:0098536 deuterosome cellular_component
GO:0005814 centriole cellular_component

KEGG:

id description
K16487 SAS-6, SASS6; spindle assembly abnormal protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222613.1 True 2830 mRNA 0.46 17 5839748 5846930

Neighbor

gene id symbol gene type direction distance location
LOC122327539 NA coding downstream 46694 5789815 ~ 5793054 (-)
bap1 bap1,LOC107704441,LOC107695622,LOC107755981 coding downstream 67675 5764038 ~ 5772073 (-)
LOC122327508 NA coding downstream 82570 5754395 ~ 5757178 (-)
shisa10.1 LOC107695620,LOC107756007 coding downstream 88666 5745190 ~ 5751082 (-)
si:dkey-42i9.4 si:dkey-42i9.4,LOC107586924,LOC107756006,LOC107704447,LOC107593103,LOC108431510 coding downstream 106206 5732383 ~ 5733542 (-)
arhgef18b arhgef18,LOC107695632,LOC107593089,LOC107586933,LOC107755984,LOC107704429 coding upstream 35896 5882826 ~ 5922490 (-)
insrb insrb,LOC107695633,LOC107586934,LOC107704428,LOC107593049 coding upstream 80586 5927516 ~ 5984443 (-)
atp6ap2 atp6ap2,LOC107663666,LOC107745967 coding upstream 164505 6011435 ~ 6016809 (-)
LOC122328173 LOC107708183,LOC107753648,LOC107696926,LOC103909885 coding upstream 249180 6096110 ~ 6097823 (-)
mid1ip1b mid1ip1b,LOC107756028,LOC107663600,LOC107704421,LOC107593044,LOC107745972,LOC107586944 coding upstream 339039 6185969 ~ 6187727 (-)
G150152 NA non-coding downstream 15835 5822929 ~ 5823913 (-)
G150126 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 non-coding downstream 184372 5654051 ~ 5655376 (-)
G150184 NA non-coding downstream 235330 5604157 ~ 5604418 (-)
G150125 LOC107586915,LOC107745408,LOC107658396,LOC107721006,LOC107593072 non-coding downstream 256707 5579470 ~ 5583041 (-)
G150161 tbc1d20,LOC107658381,LOC107586998,LOC107573569,LOC107653176,LOC107720987 non-coding downstream 293980 5545268 ~ 5545768 (-)
G150232 NA non-coding upstream 4355 5851285 ~ 5851890 (-)
G150233 NA non-coding upstream 7271 5854201 ~ 5854403 (-)
G150234 tmprss9,LOC107704409,LOC107731339,LOC107593090,LOC107695615,LOC107586983 non-coding upstream 7855 5854785 ~ 5855167 (-)
G150271 NA non-coding upstream 297948 6144878 ~ 6155016 (-)
G150273 NA non-coding upstream 310567 6157497 ~ 6183901 (-)
LOC122327537 NA other downstream 75766 5758006 ~ 5763982 (-)
nol8 LOC107586918 other downstream 166939 5661741 ~ 5672809 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other downstream 187589 5638138 ~ 5652159 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other downstream 297668 5538556 ~ 5542080 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other downstream 306939 5527230 ~ 5532809 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other upstream 12417 5859347 ~ 5861332 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other upstream 142567 5989497 ~ 5992758 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other upstream 389322 6236252 ~ 6236865 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other upstream 435526 6282456 ~ 6285580 (-)
G150440 r3hdm1,LOC107739334 other upstream 668635 6515565 ~ 6659352 (-)

Expression


Co-expression Network