asic1b (asic1b,asic1,LOC107569540,LOC107727129)


Basic Information

Item Value
gene id asic1b
gene name asic1b,asic1,LOC107569540,LOC107727129
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4790547 ~ 4830499 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222641.1
ACAGATTACTGGGGATGTCATAGTGCTCTACACCATTTCTGAAGAGGTCATTGAGGTGTTTTCATCTCTAGTAACCGAAAGATCTGAATTGGTTTGTCTGGGGTCATCTAGAATACTCCAGAATGTTGTTTTAAGAGTAACTAAACAAGTTGAGAATTTGGCTATAGACCAGTTTTTGATTTAACATCATGGTACGGATCACATGCACCATCTCCTTCAGCACCGACGATGAGCCAGTTCGTCGCTCGCGCCAAGGCAGCTTTGACGATCACTACAAGCGCGTGGTGTGGTCAAGAGATGGCGAACACGGCAAGTACCAGGAGGAGGGTGACGATCCGGACACATGCAATGGCACGGAAGAAGAAGCGCCCGACATCAGCCTCGCCACCTTTTTCGGCGGATGCTCCCTCCACGGAGCCAACCACGTCTTCGTAGAGGACAAGAAGATCAGCATCCCGGGCTTGTGGACTGTGGTCTTCCTGTTGGCGATCTCCATGTTCCTCATGCAGGTGGTTGACCGTGTCATCTACTACCTGCAGTACGACTACATCACCATGCTAGACGAGCGCAACGCCAGGAACATGACGTTCCCCGCCATCACGCTCTGCAACTACAACTCGTTCCGTCGCTCGCAGCTCAGCTACAGCGACTTGCTTTTCATGGGGCCGCTCTTGGGATACGAAGACAACATGGCTCCGGGAATCCCTTTGGCACCGGAACCCGACCGGCAAGGGTCTCGATTCAGCCTCGCCGAGTTCTTCAATCGCACCCGTCACAGCATGGAAGACATGCTTCTGGAATGCAACTTTGCGGGGAAGGAGTGCGGCCCGGAACACTGGAGAGAGaTCTTCACGCGCTATGGAAAGTGCTACACCTTCAACTCTGGACAGGATGGACGGCCGCTGCTGATCACCATGAAAGGAGGGATGGGAAATGGGCTGGAGCTGATGCTGGATATCCAGCAGGACGAGTATCTGCCTGTGTGGGGAGAGACTGATGAGACGTCTTTCGAGGCGGGAATCAAAGTCCAGATCCACACGCAGGATGAACCGCCTTTCATCGATCAGCTGGGATTCGGAGTGGCTCCAGGCTTCCAGACGTTTGTCTCCTGCCAAGAACAGCGGCTGACGTATCTTCCTCCTCCATGGGGCGACTGTAAGGCTACACCCATGGACTCTGATTTCTTCAGCACATACAGTATCACCGCCTGCCGCATCGACTGCGAGACGCGATATCTGGTGGAGAATTGCAATTGCCGCATGGTGCACATGCCTggAGATGCTCCATATTGCACTCCGGAACAGTATAAGGAATGTGCAGATCCGGCTCTAGATTTTCTGGTGGAAAGAGACAACGACTACTGCGTTTGCGACACGCCGTGCAACATGACGCGCTACGGCAAAGAGCTGTCCTTCGTCAAGATCCCTAGCAAAGCCTCTGCCAAATACCTGGCCAAGAAGTTCAACAAGACGGAGCAGTACATTGCAGAAAACATCCTGGTGCTGGACATCTTCTTCGAGGCTCTGAACTACGAGACCATAGAGCAGAAGAAAGCCTACGAGTTAGCCGGCCTTCTTGGTGACATTGGAGGACAGATGGGACTGTTCATCGGGGCCAGTATCTTAACCATCCTGGAGCTCTTCGACTACCTGTATGAGgTGATCAAGTACAAACTGTGTCGTTGCGCCAAGAAGAAACACCAGCGCAGTAACAACAACGAACGAGGAGCCGTTCTCAGCTTGGACGATGTAAAGCGCCACGCTCCCTGTGAAAACCTTCGTACCCCGTCAACCTACCCAGCCAACATGCTACCTCACCATCCTGGCCAGGGCAACTTCGAAGACTTCACCTGTTGAGCATAAAGCAAGAGCGACCTGTCTGACAGAGAACAACCAAAGCTGACCACATCAGTACGGACCCCATTCACAACCGGACATTACAGAACAACCTTCTGGATCTGCCACATACTGGAAAACCACCATGTCTTGAGATATATCCAGACATCGGAGTAATGGTACCGAGCAACAAAGTATATTTTCACTAACACGTTCCATGGAAaacttttgatgttttttgaacatttcaagGAAATACTGCCTCAAAAACGAAACTCCTTGAAGCCTAAGAAATGACAAATTCTGTGACTTGGACATCGAATAGCTTTCCGCAGCTGGACCCTGATgccttttgtgtacatagtgACGGCTCTAAACTGTCTTAAGACCAGTGGCTTACGTAGGTCAGTAGATAAATATAGCGCTTATTCACTGTATGTAGCCTCATTAGTCCCATCCGCTGGATCTATTCAGCCTCAGTGTATCTCACGAGAATGTAACTTCCCGAACAAGGTGACCATCACAAGCGTCAAGAGGGGGTTTTCGGGGTGCTGGAGGGTTCAGGTCCCATATGACATTGTGTTACAGGTCTCATCTTGTAAATGCATGCTGGTCGTCCTGtgcatgtttttagttttatttagataTCATTATTACTATCGCCAAGTTTGCCTCAATTATATACAAGCGCTGGAAGATGGTGtaaagtttgtttttctgtgtatatGCGTGTGCGCAGGTTTTGCTGTTCTTGTGGGGGTGAAGTTTCTCAGTGATCCCAGAAGAATAGCAAGCTGATAGAAGCACCTTGTCAGAACCTCTCTACGAGGATTCAATATGATACTAAACAAATGTATAAGTTAATATCTAAAAATGCCAAGAAGGTTTATTTTAAGTCTAGAATCAGTCTGTCGTATAATTAACATatttgataaatgataaatgggAATGGGAAGCCCTCAAATTGATACAGTGGCCCCAAAaggtatttggacactttcaaACATGTCAAAATGTGTTGCTTTAAGATTGCACATCAAAAATGCTGCAGGATTGCTATGGTGGTTTTTAGTGAATCTATgatatctgtttttcttttttaagacttttaatgacatttaatgaTGGCCTGTTTACACCTGGTAACTACATGCTCTTTCTCTGATCGGATTGTTACCCGATCCTAAAAAGACCAGTCGTAAATGCCCCTGAAAACACTTTTGAGATGGATTTAAATCTGATCGCTCAAACCACTTCAGGAGGTGATCTGGCTGATTGCTGAAACCACTTGGCTAACATTACTGTCCGTGATACCAATTGGTACTGaaattttaaagggatagttaatcctaaaatgaaatttctgtcattaattacacacCCTTATGACCTTTGTTcctctttggaacacaaattaagatttttttaatgcattccgAGAGCTCATTATGTGacaaaaatggaagaaaacaCATGAAGTGACCAGGTGTAAACAAGTCCTCAGGCATTTGTAGTTGTGACtaaaagtgttcatttctgtCTAGGGCTAATGTATGAATACATGATTGTTTATGTGCGCATGAAGGTGTGACTGAGCACGAATGTTTGTGACGAATGTTTCATTATTTGCGCTGTGTTGCTGGTCTGTTTCTGGACGAAAGGGTTTCCAGGATCAGGAATGTAACAAACCAAAGAGTTTGTATCGCTGGGTGGACCAGACCGATCACTCGTACAGCACACCGGTCATCACCGCAAACTGTTGTAgttgtgcgtgtgtatgtgtgcatgtgtgtttgtttgtgcgaGACTGTTATTCCTCCGTCTTTATTTTCGTTTCGTTAATGAATACCGAACTTCGCATTTAACGGCTTACTGTTTATTTCCGCTCTGTACTTGCCGATACGTATTTGTTAATGTCGCAAACTTCATATCAAAGCACAAACAAGACCACCGATATGTAAAGGTGATGTTaaagaatgataaaatattCTTATCAGTGTTATCATAATCGACAGATTCATTGGTACTCTTTattctttagttttttgttttttttttactacaaacaTACATATTGCCTGATAGTGCAGTCGGCAGATAATAGGCTGTTCTATTTATCTATGAAGGTATAATAAATATCATTCATAATTTTA

Function

symbol description
asic1b Enables ligand-gated sodium channel activity. Predicted to be involved in cellular response to pH; protein homotrimerization; and sodium ion transmembrane transport. Predicted to act upstream of or within sodium ion transport. Is integral component of plasma membrane. Is expressed in gill and integument. Orthologous to human ASIC1 (acid sensing ion channel subunit 1).
asic1 Enables acid-sensing ion channel activity. Involved in cellular response to pH; sensory perception of sour taste; and sodium ion transmembrane transport. Located in Golgi apparatus and plasma membrane. Is integral component of plasma membrane.

NR:

description
PREDICTED: acid-sensing ion channel 1 isoform X3

GO:

id name namespace
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0015280 ligand-gated sodium channel activity molecular_function

KEGG:

id description
K04829 ASIC1, ACCN2, BNAC2; acid-sensing ion channel 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222641.1 True 3988 mRNA 0.45 11 4790547 4830499

Neighbor

gene id symbol gene type direction distance location
smarcd1 smarcd1,LOC107698569,LOC107694342 coding downstream 5332 4777983 ~ 4785215 (-)
gpd1b gpd1b,LOC107698578,LOC107721242,LOC107727040,LOC107694423,LOC107566434 coding downstream 13334 4773807 ~ 4777213 (-)
LOC122327538 NA coding downstream 17804 4770578 ~ 4772743 (-)
LOC122328160 NA coding downstream 23019 4760030 ~ 4767528 (-)
LOC122327350 NA coding downstream 33115 4750241 ~ 4757432 (-)
LOC122327307 NA coding upstream 185592 5016091 ~ 5021442 (-)
LOC122327494 NA coding upstream 229699 5060198 ~ 5071072 (-)
LOC122327526 NA coding upstream 254341 5084840 ~ 5086512 (-)
LOC122328166 NA coding upstream 276854 5107353 ~ 5108551 (-)
LOC122327498 LOC107740712,LOC107755677 coding upstream 278261 5108760 ~ 5110661 (-)
G149594 NA non-coding downstream 109471 4679919 ~ 4681076 (-)
G149598 NA non-coding downstream 118777 4662075 ~ 4671770 (-)
G149592 LOC107729908,LOC107712186,LOC107702610,LOC107702613 non-coding downstream 164642 4625597 ~ 4625905 (-)
G149587 NA non-coding downstream 175662 4614307 ~ 4614885 (-)
G149586 NA non-coding downstream 179274 4610930 ~ 4611273 (-)
G149955 LOC107698556 non-coding upstream 101950 4932449 ~ 5041927 (-)
G149956 NA non-coding upstream 108936 4939435 ~ 4939839 (-)
LOC122327586 NA non-coding upstream 126902 4957401 ~ 4965773 (-)
G149962 NA non-coding upstream 161111 4991610 ~ 5003689 (-)
G149963 NA non-coding upstream 161462 4991961 ~ 4999176 (-)
LOC122327545 NA other downstream 53687 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 202125 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 303622 4482821 ~ 4486925 (-)
LOC122327456 NA other downstream 357047 4428805 ~ 4433500 (-)
LOC122327462 LOC107741386,LOC107698560 other downstream 508779 4272551 ~ 4281768 (-)
LOC122327354 NA other upstream 315427 5145926 ~ 5153856 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other upstream 696731 5527230 ~ 5532809 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other upstream 708057 5538556 ~ 5542080 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 807639 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 831242 5661741 ~ 5672809 (-)

Expression


Co-expression Network