LOC122327343


Basic Information

Item Value
gene id LOC122327343
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2951134 ~ 2953797 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222642.1
GTACAATTGTGTTTCAGAGACGTCTAGCCCTGCTATCGTGGGCTTTTCAGAGAACCGATGAGGAAAATGTTTCTCgagtttgttttgttctttttgtgctTGTGGCGTCTGGAAGGAGTGTTTGGGGATGATGAAGCGAGGTCAGTgtcagtgatggagggagattcagtcactctaaAAACTAGTCTGACTGAATTAATTGATGATGATCTGATTCAGTGGAGGTTTGGGATAGAAATAACTTTATTGgctgaaatcaataaaaaggCTGATAGAATAGCTGTGtatgatgatgttcttgacgGGAGATTCACAGACCGACTGAAGCTGGACAAACAAaccggatctctgaccatcactaACACCAGAACTGAAGATACTGGACGTTATTTATTACTGATAAACCACATGAGCATCATTTTCACTCTCATCGTCTCTGaaataaagatggTGTCAGTGaaggagggagattcagtcactctcaACTCTGATCTTACTGAAGTAAAGGATGGTGATGAGATTCAGTGGTGGTTTGGAAACACTTTAATCGCTGAAATCAATAAACAGACCGACATCATGACTGTatatgatgatgttcttgacgggagattcagagacagactgatgCTGGACAAACAAAGAGGATCTCTAACCATCACTAACATCACAATGAAACATGCTGGAGCTTATGTAACACTGATCAATCATATCAGGATTTATTTATATCTCATTGTCTATTATCACGTTGCAGTGCTTGAGGGAGATTCAATCACTCTGAACTCTGGTCTCACTGAAATGAAGGATGATGATGAGATTTTGTGGAAGCTTTGGATTGAAAACACTTTGATAGCTGAACTTAACGTAACCGCTAAAGGCATCGATGTATATGACGAGCACATTTATGGGAGTTTCAGAGGCAGACTGAAGGTGGATGTTCAAACCGGATCTCTGATCATCACAGACGCTAGGTTTCACCACAATGGACGTTATGAATTACTGATCAACCAcgtcacaatttatttttttctcaatgtcTATCGTGAAATATCAGCGATGGAGGGAGATTCGGTCACTCTAGATTCTGATTTTTATGAAATGGATGATTATGTTATTCAGTGGGCGTTTTGGACTGAAAACACTTCAAGAGCTATAATCAGTAAAGAGGTTAACAGAAATACTGTCTATGATGTTCTTgacgggagattcagagacagactgaagctggacgaTCAAaccggatctctgaccatcatgaacaccaCAAATGAACATACTGGAGTTTATTATCTGCAGATCAACAATGACAGCTGGTCTTTTTATTATCTCGCGGTCTACGCTCATCTGCCTGTTCCTGCCATCAGCAGAGActgttcttcatcatcatcatcttgttCGTTGTTGTGTTCGGTGGTGAACGTGGGTCacgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataaaaacatctacagctgtgtgatcaacaaccccatcagaaaccagaccacacatctgGACATCAGCAGACTCTGTCACACGTGTTCAGACTCTGAACACTGCTGTGGTTTTACTGAAGCTGTGATCCGATTGGCCCTCTCCGCTCTGGTGGGCGTGGCTACAGTCCTGTATATCTGATCCAGAAGAGATCAAGCACATATTCACACAGCAGGTACCTCATTGATAATACAGTTTCTCATAaagctgtttattatttataataatgttcatttatttgtatttggttttgtatttatattcacatactGGTATGT

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko04514 Cell adhesion molecules
ko04530 Tight junction
ko04670 Leukocyte transendothelial migration

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222642.1 True 1841 mRNA 0.41 7 2951134 2953797

Neighbor

gene id symbol gene type direction distance location
LOC122328125 LOC107570673,LOC107575767 coding downstream 1437 2941004 ~ 2949697 (-)
calr3a calr3a,LOC107702625,LOC107717161,LOC107561598,LOC107549384,LOC107704500,LOC107742789 coding downstream 59368 2888182 ~ 2891766 (-)
rad23ab rad23ab,LOC107717165,LOC107704496,LOC108271249,LOC107702626 coding downstream 63640 2880554 ~ 2887494 (-)
trnad-guc_19 NA coding downstream 70729 2880334 ~ 2880405 (-)
trnad-guc_18 NA coding downstream 71499 2879564 ~ 2879635 (-)
LOC122327346 NA coding upstream 9434 2963231 ~ 2972360 (-)
LOC122327311 cherp,LOC107742793,LOC107753747 coding upstream 23854 2977651 ~ 2988298 (-)
LOC122327522 NA coding upstream 36473 2990270 ~ 2993545 (-)
rx1 rx1,LOC107704501,LOC107566365,LOC107742795,LOC107753738,LOC107549385 coding upstream 45307 2999104 ~ 3002795 (-)
matk matk,LOC107702632,LOC107704492,LOC107566337 coding upstream 56290 3010087 ~ 3017408 (-)
LOC122327605 NA non-coding downstream 52484 2895960 ~ 2898650 (-)
G148860 NA non-coding downstream 191447 2698113 ~ 2759687 (-)
G148749 NA non-coding downstream 358405 2591572 ~ 2592729 (-)
LOC122327855 NA non-coding downstream 387911 2527094 ~ 2563223 (-)
LOC122328197 NA non-coding downstream 426832 2518437 ~ 2524302 (-)
G148906 NA non-coding upstream 87655 3041452 ~ 3045417 (-)
G148927 NA non-coding upstream 148782 3102579 ~ 3102897 (-)
G149071 NA non-coding upstream 239491 3193288 ~ 3194804 (-)
G149074 NA non-coding upstream 279875 3233672 ~ 3235759 (-)
G149076 NA non-coding upstream 288624 3242421 ~ 3242805 (-)
gpr35.2 NA other downstream 700573 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 834951 2114320 ~ 2116183 (-)
G148613 NA other downstream 1286507 1661185 ~ 1664627 (-)
G148574 NA other downstream 1296794 1643710 ~ 1654340 (-)
LOC122327997 NA other downstream 1336596 1583015 ~ 1614538 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other upstream 97603 3051400 ~ 3065177 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 270351 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 301599 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 371778 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 424235 3378032 ~ 3451429 (-)

Expression


Co-expression Network