smarcd1 (smarcd1,LOC107698569,LOC107694342)


Basic Information

Item Value
gene id smarcd1
gene name smarcd1,LOC107698569,LOC107694342
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4777983 ~ 4785215 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222651.1
ATACTGGTTCGCGTCTCACCGGTGGAGCTTCGTCTGTTTGCGGCTCGCGGAGAAGATGGCGGCGCGTAGTGGTTTTCAGCCTGCGACACCCGGAGGCGGCGGAGCTCCGATGGGACCCGGACCGCCGGTAGCCGGTGCGGGGCCCGGAATGGGTCCCGGTACGCCCTCGGGACGGATGGGGCCCGGCGGCCCGCAGAACCATATGTATCGATCACCGATGCCCGGATACCCGAGACCAGGAATGCCTCCAGCCAGTCGCATGACCCCTCAGGGACCCTCTATGGGACCCCCAGGTTACGGGGCCAGTCCAGTGTCCCGTCCCGGTATGCCAGTCATGGACCCGTCTCGCAAACGACCACCGCCAAATCAGATTCAACAGGTCCAGCAACAGAATCGCAACCAACAtgccaagaagaagaaaatggcAGATAAAATTCTACCTCAGAGAatCAGAGAGCTTGTTCCAGAGTCTCAGGCGTACATGGACCTGCTGGCGTTTGAGAGGAAGCTCGACCAGACCATCATGCGCAAAAGGCTCGATATTCAGGAAGCTCTCAAAAGACCCATCAAGcaaaaaagaaaactacGCATATTTATCTCCAACACCTTCAATCCTGCCAAACCAGATGCAGAGGATGGCGAAGGAACTGTTGCATCTTGGGAACTGCGTGTGGAAGGACGACTCCTTGAAGACACTGCTGTGTCCAAGTATGAAGCCACCAAGCAAAAGAGGaagttttcctcttttttcaAGTCTTTAGTGATCGAGTTGGACAAAGACTTATATGGACCTGACAATCATTTGGTGGAGTGGCACCGAACAGCCACGACTCAGGAGACCGATGGATTTCAGGTGAAGAGGCCTGGAGATGTTGGCGTCCGTTGTACTGTACTGCTCATGCTGGACTACCAGcCTCCTCAGTTTAAATTGGACCCCAGACTGGCCCGGTTGCTGGGGATCCACACTCAAACGCGGCCTGTGATCATTCAGGCTTTGTGGCAATATGTGAAGACCCACAAACTCCAGGACCCTCATGAACGAGAGTTCATTAACTGTGATAAATACCTCCAGCAGATCTTTGAAACCCAGAGGATGAAGTTTTCTGAGATTCCTCAACGTCTGCATGCACTACTGATGCCCCCCGAGCCGATCATCATCAACCATGTCATAAGCGTGGATCCCAATGACCAGAAAAAGACTGCGTGCTACGATATAGACGTGGAGGTGGATGACACCCTGAAGACCCAGATGAACTCTTTTCTGCTGTCCACGGCCAGTCAGCAAGAGATTGCAGGCCTTGACAACAAGATCCATGAGACCATTGAAACCATTAACCAGCTGAAGACTCAAAGGGAGTTTATGTTGAGCTTTGCACGTGACCCGCAGGGCTTCATCAATGACTGGCTCCAGTCGCAGTGCCGAGACTTGAAGACTATGACTGATGTGGTTGGAAACccagaggaagagaggagagcCGAGTTCTACTACCAACCCTGGGCTCAGGAAGCTGTGTGCCGATATTTCTATTCAAAGGTTCAGCAAAGGAGACAGGAGCTGGAACAGGCTCTTGGCATTCGAAACACATAAGCAAGCTCGCGACTGTTACGACACAGGACCAGAGGGGGTTCTGGGTAGCAAATGTCTTGCAGCTCTGTGCTGGAGACGCTGATCACTACAGTTATATTACAGTTTATCTTGTGCTGTCCTGCTGTAGCTGCCCTGGAATGACCCTTATACagaaacaaacatatttttgttgtgaCTCCGCCAACTAACGGCCCATTGTCTGCtgtcatccttttttttttttttttttttttttacatatttcacGGTTCCCCGAGCATTTGTCAAGGTGATTTTGCAATGCTGTCACTTTGGGAAATGTACTTTTCTGACCAAACTGACAGGCTTCGTTAGACAGTTAAATTCCAAATCACAAGAATGCTCTTGGATGTGCTAATGTTTGAGCCCATCCGCTGCTTTCCATATTAATCAATCAGTTGGAGGggtcattgtttatttttgaagttATTGATATTGtctttgatattttaatgttcTCATTATATGAACTTTATGAAGATCTAGTCTAGTTAAGCATAGATGGCGGATAATGACGTAGTTTAGTACCTCAGCTCTGTGAAGATGAATTATTCGGAGGAAGTTCCTCAAACAAGTCTGTTGGCGTTAAAGGCAAGCTTTCTGCAACACTCGATGAATACGGAGACTTCTTCAGAACTCCTCTGTTCAATAGTCGTTTTAGATTCACAAGATTAGATGTACTGCTGATCGACCTGTTTGATTTATAGATCTTTTGGTCACAAGCTTCGTCCTGGACTGTAAAGTAATTCCAATCTAACCTCGCTGTGATATGTATTAAGACATTTAGAGAATTGCCTTTAtagtttttggtttatttgattaattattattattaaagtgaaCTCTGAAAGGACAAAGTGTAACAACCCTGTCAAGGCAAGTATCATCCAGCCATGGCCACCCACAAAATGTCTGGGAAAACTGTcaagtgttttaatattttatagatgCGCTGCAGAGAGGCCATGGGTTCTTCCACTCAAGTAATTCAAAGCGTTTAGAAGTCAAGTGCTAAAGACTTTAACATTCTTGGTAGTTTGAGTTTGAACTGCATTTTGCTTTCTTAAagtcatgcatttgttttgatttttatatcTTACAATCTTGTTTTTCCGTTTTCCTTAATGGACCAAATGTTGTATTTCTGTTAGCCCTTGTGTTATAATAAAGATTATCTTGTATCAATGCTGAA

Function

symbol description
smarcd1 Predicted to enable transcription coregulator activity. Acts upstream of or within hemopoiesis; somite development; and spinal cord development. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Is expressed in ventricular zone. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome. Orthologous to human SMARCD1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1).

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222651.1 True 2798 mRNA 0.46 13 4777983 4785215

Neighbor

gene id symbol gene type direction distance location
gpd1b gpd1b,LOC107698578,LOC107721242,LOC107727040,LOC107694423,LOC107566434 coding downstream 770 4773807 ~ 4777213 (-)
LOC122327538 NA coding downstream 5240 4770578 ~ 4772743 (-)
LOC122328160 NA coding downstream 10455 4760030 ~ 4767528 (-)
LOC122327350 NA coding downstream 20551 4750241 ~ 4757432 (-)
LOC122327323 NA coding downstream 32026 4738382 ~ 4745957 (-)
asic1b asic1b,asic1,LOC107569540,LOC107727129 coding upstream 5332 4790547 ~ 4830499 (-)
LOC122327307 NA coding upstream 230876 5016091 ~ 5021442 (-)
LOC122327494 NA coding upstream 274983 5060198 ~ 5071072 (-)
LOC122327526 NA coding upstream 299625 5084840 ~ 5086512 (-)
LOC122328166 NA coding upstream 322138 5107353 ~ 5108551 (-)
G149594 NA non-coding downstream 96907 4679919 ~ 4681076 (-)
G149598 NA non-coding downstream 106213 4662075 ~ 4671770 (-)
G149592 LOC107729908,LOC107712186,LOC107702610,LOC107702613 non-coding downstream 152078 4625597 ~ 4625905 (-)
G149587 NA non-coding downstream 163098 4614307 ~ 4614885 (-)
G149586 NA non-coding downstream 166710 4610930 ~ 4611273 (-)
G149955 LOC107698556 non-coding upstream 147234 4932449 ~ 5041927 (-)
G149956 NA non-coding upstream 154220 4939435 ~ 4939839 (-)
LOC122327586 NA non-coding upstream 172186 4957401 ~ 4965773 (-)
G149962 NA non-coding upstream 206395 4991610 ~ 5003689 (-)
G149963 NA non-coding upstream 206746 4991961 ~ 4999176 (-)
LOC122327545 NA other downstream 41123 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 189561 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 291058 4482821 ~ 4486925 (-)
LOC122327456 NA other downstream 344483 4428805 ~ 4433500 (-)
LOC122327462 LOC107741386,LOC107698560 other downstream 496215 4272551 ~ 4281768 (-)
LOC122327354 NA other upstream 360711 5145926 ~ 5153856 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other upstream 742015 5527230 ~ 5532809 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other upstream 753341 5538556 ~ 5542080 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 852923 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 876526 5661741 ~ 5672809 (-)

Expression


Co-expression Network