LOC122327354


Basic Information

Item Value
gene id LOC122327354
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5145926 ~ 5153856 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222657.1
TTTACTAGAGATGCTTCCGATCGTTAAATGGTGGCTTCTGCTTTTGGCTGCGTTGATGTCGCGGATATTTTGACGCCGAAAATTGCATGCTTgaagctttatatatatttattttgagctttAAACGCCATCCACATACATGGGAAAAGCTGCGACTGTAAAGTATCTGTTAGACTGGTGTATTTTTGGGAGATATTCGCGCTTGTAGCAGGTTCGGGCGCGGCTCAGGTAGAAGAAACCAATTATGCAGCGGGCTGTAACTAATCGCCGTTTATAATTATATCTGGACTTATATCTGGAACAGCCCTGTTAAAACATAGGATGACATTGCtgtattttatcttattattcGTGGACGgCGTGTTTGTTGCAGAAACAGATGAGACAATGTCAGTGATGGAAGGAGATTCCATCACGCTACACACTAATTATACTGAAATACAGAACGATGATACGATACTGTGGATGTTTGGACCTAAAGACTCCCTCATATCTCAAATAACAAGAAAAGGAGATTTTACCTCATTTTTTGTCACTGATGATGTGGGATTCAGAGGCAGATTGCAGGTGGATCAAAACACTGGCTCTCTCACCATCAGAAACACCAGAATCAAACACTCAGGAAAATATAAAGTAACCATCTCTAGTGAAAGCATCACAACCAAGAAATTTAACGTTTTTGTAATTGGTGTTGTTGGTGAGACGGGTGGAGTGAAGTCAGTGTCAGTGATGGAGGGACATTCTGTCACTCTACAGGATTATATTCCTGAAGTACAGCAAGAAGATCTAATAGTGTGGAGGTTTGGAGATAAAGGAATTCTCCTCGGTAAACTTGACATGGAAACCAAAGAGACCTCATTGAACGACGCCGATGAGAGATTCAAAggcagactgaagctggattggactggatctctgaccatcgaGAACACTCGAAGTGAACACGCAGGACTTTATGAAGTGCAGATCAGAGGCCGCGAGAGCTCACAGCAGTTCCTTGTTTCTGTAAATGCTGTTCCTGATCCGGGTCAGTCTCCGGGTGCTATAGCTGGGATAGCTGCTGCTGTTCTGGTGTTTTTGGCTGCAATTGTAGCCGCTATTGTATTTTACTATCGCCGCAAGATCTCTGAACTACAAATGCATGTGGTCGAAGAAAAGTCAGTGGCAGACGGAGATTCTGTTACTCTGAAAACCGATACTGAACTACATAAAGATGATAAGATACAGTGGTGCTATATAGAAGACAACAATCTCGTCGCTGAAATCAGTGGAGCGGCCAGTAAAAGAACATGTGATGGTGTTGATGGGAGATTCAGAAGCAAACTGGTGCTGAATAAGAAGACTGGAGATCTCACCATCAACAACATCATGCTTAATCACTCCGGACTCTACAAACTCAAGATCaccagcaaaaacaaaataacagaaaagagATTCGTTCTTACCGTCGAAATGAGGACCGTGTCAGCGATGGTGGGAGAGCAGGTCCATTTATCAACAGAGATTGAAGTACAAAGCGATGATCTGGTATTGTGGACATTCGGAGCTGAAAACAATCTCGTAGTTAAAGCTGATTTAGGATCGATTAGCACTGGTGCGAGATTCAAAGAGAGACTGGAACTGGCCGAGAACACTGGATCTCTGATCATCAGAAACATCACAATTGCAGACTctggacattttaaactccaggTCATCAACAGCAAACAGAGCCGATTCAAGAGATTCCATGTGACTGTCACTGATTCCACAGTAAACAGAATCAGTGAATCAATTGGATCGATTGAACTGAAGCCCATGCTGAAAGGAGAGGAGAAATAAGTGAAAGAGCGTCAGGGGACAAGTTGAGTCTAATAAGACACGGCCACCAGTGCCACCAATACATTCGCAACAATCGCACTCAATAatatatttctgcttttatgATAAGGAGAAAATAACCTGTAATAATGCTGTTTCATTGAGAAATGAATCATGTTTGAGAACAAATATAGGCCATAGTgaaataatagtttattttatgtacACTGCTTGAGTTGataatgattcagtgactttAATGAATCGATGAGTCAAATATTTAACTTGCTAATCTGTAATATAGACTCTCATTTATCGCCACCTATTGACATAGGTTTATAGAAATAGTCATTTTTTTGAATGACTGTATTATTTATGCCATTTATGGTACTACTATTTTCTCCtggacacattttattttggggcTTTGTGGCAAGTTTTAGCCTATTGAGTGCATGacctaaaattctaaaatatattttgagactgaaagatgttttattttttcaagtgTAACACTATTTTCAAATGCACACATGTCTTTAGGTCGTAAACTTATAGATTTGTAAATATAGGAAGAAGGGAAATTAGAACAATGACTGTGATTGACCATGAAGttaagcaatgcatattattaaaaaaaaaaaaaaaaaaaaaaaaatatttatttaaaataatttgtttatcattatggcattttaataaatttttacttaattttaatttttttgtataaaataacttGTCCTTAAGTGTCCATTCTCTTTTAAGTCAAATTCGTACATTTAATCAGTGAATTAAAATACTAagtttttagatttagatgCAATTTACTCACTTTAGATGTATTTACTCACTGTTTAAAGACATTGATGCATTTAACCtacaattacatatttataaataatgtttttttatatataataaacataaaacgctgaatactgatatttgaaatgaaaagataCTCTGAATATAAAATTAGAAACcaccagtagatggcagcaaGTCACTGTTACAGTTTTTTACGATCAATTTTGCACTAATAACAGAACCATCCTGACATTTTTCATTCAACTAAAACCAATGGTTCAACATGACATAACACCAAAGTGGCCTATTTACtgtttactatttactatttactgTTACAAAATGCAACAAGAATTGCAAGATCTTGCtacaaaaaaatagataattttATGAACTTACAAGCAACTGgcaaaaaacaagcaaagatGCTTCGCTTATTATAAATAGATATGGCAACATTGCAAGAGCGAGTATAGCCTTCAGCATTCCCATAGGAagggcatttaaaaaaaaaaattacgggTTTCATTTTGTCACACGCGTGtactctgtgttgttgtttttgtctctgtgtgccctaccttccgttcctgttaattgtatctTTGTCTTCATCTGTGTcttttaatttagtcaattactttgtatttattccctgtgtgtttcagctccATCGATGTTTTTCTGCCTACCTGCCCGAGGTATTATTCCTCTATGTGTGCATGATTAAAATCATTAACTTTA
>XM_043222659.1
TTTACTAGAGATGCTTCCGATCGTTAAATGGTGGCTTCTGCTTTTGGCTGCGTTGATGTCGCGGATATTTTGACGCCGAAAATTGCATGCTTgaagctttatatatatttattttgagctttAAACGCCATCCACATACATGGGAAAAGCTGCGACTGTAAAGTATCTGTTAGACTGGTGTATTTTTGGGAGATATTCGCGCTTGTAGCAGGTTCGGGCGCGGCTCAGGTAGAAGAAACCAATTATGCAGCGGGCTGTAACTAATCGCCGTTTATAATTATATCTGGACTTATATCTGGAACAGCCCTGTTAAAACATAGGATGACATTGCtgtattttatcttattattcGTGGACGGTAAGTGCATTTCTGTTTTGGAAGTCTTTTGGAAgtcaaaatgaaagagaaagttAAAGCGATTTATGGCCAGgCGTGTTTGTTGCAGAAACAGATGAGACAATGTCAGTGATGGAAGGAGATTCCATCACGCTACACACTAATTATACTGAAATACAGAACGATGATACGATACTGTGGATGTTTGGACCTAAAGACTCCCTCATATCTCAAATAACAAGAAAAGGAGATTTTACCTCATTTTTTGTCACTGATGATGTGGGATTCAGAGGCAGATTGCAGGTGGATCAAAACACTGGCTCTCTCACCATCAGAAACACCAGAATCAAACACTCAGGAAAATATAAAGTAACCATCTCTAGTGAAAGCATCACAACCAAGAAATTTAACGTTTTTGTAATTGGTGTTGTTGGTGAGACGGGTGGAGTGAAGTCAGTGTCAGTGATGGAGGGACATTCTGTCACTCTACAGGATTATATTCCTGAAGTACAGCAAGAAGATCTAATAGTGTGGAGGTTTGGAGATAAAGGAATTCTCCTCGGTAAACTTGACATGGAAACCAAAGAGACCTCATTGAACGACGCCGATGAGAGATTCAAAggcagactgaagctggattggactggatctctgaccatcgaGAACACTCGAAGTGAACACGCAGGACTTTATGAAGTGCAGATCAGAGGCCGCGAGAGCTCACAGCAGTTCCTTGTTTCTGTAAATGCTGTTCCTGATCCGGGTCAGTCTCCGGGTGCTATAGCTGGGATAGCTGCTGCTGTTCTGGTGTTTTTGGCTGCAATTGTAGCCGCTATTGTATTTTACTATCGCCGCAAGATCTCTGAACTACAAATGCATGTGGTCGAAGAAAAGTCAGTGGCAGACGGAGATTCTGTTACTCTGAAAACCGATACTGAACTACATAAAGATGATAAGATACAGTGGTGCTATATAGAAGACAACAATCTCGTCGCTGAAATCAGTGGAGCGGCCAGTAAAAGAACATGTGATGGTGTTGATGGGAGATTCAGAAGCAAACTGGTGCTGAATAAGAAGACTGGAGATCTCACCATCAACAACATCATGCTTAATCACTCCGGACTCTACAAACTCAAGATCaccagcaaaaacaaaataacagaaaagagATTCGTTCTTACCGTCGAAATGAGGACCGTGTCAGCGATGGTGGGAGAGCAGGTCCATTTATCAACAGAGATTGAAGTACAAAGCGATGATCTGGTATTGTGGACATTCGGAGCTGAAAACAATCTCGTAGTTAAAGCTGATTTAGGATCGATTAGCACTGGTGCGAGATTCAAAGAGAGACTGGAACTGGCCGAGAACACTGGATCTCTGATCATCAGAAACATCACAATTGCAGACTctggacattttaaactccaggTCATCAACAGCAAACAGAGCCGATTCAAGAGATTCCATGTGACTGTCACTGATTCCACAGTAAACAGAATCAGTGAATCAATTGGATCGATTGAACTGAAGCCCATGCTGAAAGGAGAGGAGAAATAAGTGAAAGAGCGTCAGGGGACAAGTTGAGTCTAATAAGACACGGCCACCAGTGCCACCAATACATTCGCAACAATCGCACTCAATAatatatttctgcttttatgATAAGGAGAAAATAACCTGTAATAATGCTGTTTCATTGAGAAATGAATCATGTTTGAGAACAAATATAGGCCATAGTgaaataatagtttattttatgtacACTGCTTGAGTTGataatgattcagtgactttAATGAATCGATGAGTCAAATATTTAACTTGCTAATCTGTAATATAGACTCTCATTTATCGCCACCTATTGACATAGGTTTATAGAAATAGTCATTTTTTTGAATGACTGTATTATTTATGCCATTTATGGTACTACTATTTTCTCCtggacacattttattttggggcTTTGTGGCAAGTTTTAGCCTATTGAGTGCATGacctaaaattctaaaatatattttgagactgaaagatgttttattttttcaagtgTAACACTATTTTCAAATGCACACATGTCTTTAGGTCGTAAACTTATAGATTTGTAAATATAGGAAGAAGGGAAATTAGAACAATGACTGTGATTGACCATGAAGttaagcaatgcatattattaaaaaaaaaaaaaaaaaaaaaaaaatatttatttaaaataatttgtttatcattatggcattttaataaatttttacttaattttaatttttttgtataaaataacttGTCCTTAAGTGTCCATTCTCTTTTAAGTCAAATTCGTACATTTAATCAGTGAATTAAAATACTAagtttttagatttagatgCAATTTACTCACTTTAGATGTATTTACTCACTGTTTAAAGACATTGATGCATTTAACCtacaattacatatttataaataatgtttttttatatataataaacataaaacgctgaatactgatatttgaaatgaaaagataCTCTGAATATAAAATTAGAAACcaccagtagatggcagcaaGTCACTGTTACAGTTTTTTACGATCAATTTTGCACTAATAACAGAACCATCCTGACATTTTTCATTCAACTAAAACCAATGGTTCAACATGACATAACACCAAAGTGGCCTATTTACtgtttactatttactatttactgTTACAAAATGCAACAAGAATTGCAAGATCTTGCtacaaaaaaatagataattttATGAACTTACAAGCAACTGgcaaaaaacaagcaaagatGCTTCGCTTATTATAAATAGATATGGCAACATTGCAAGAGCGAGTATAGCCTTCAGCATTCCCATAGGAagggcatttaaaaaaaaaaattacgggTTTCATTTTGTCACACGCGTGtactctgtgttgttgtttttgtctctgtgtgccctaccttccgttcctgttaattgtatctTTGTCTTCATCTGTGTcttttaatttagtcaattactttgtatttattccctgtgtgtttcagctccATCGATGTTTTTCTGCCTACCTGCCCGAGGTATTATTCCTCTATGTGTGCATGATTAAAATCATTAACTTTA
>XR_006247637.1
TTTACTAGAGATGCTTCCGATCGTTAAATGGTGGCTTCTGCTTTTGGCTGCGTTGATGTCGCGGATATTTTGACGCCGAAAATTGCATGCTTgaagctttatatatatttattttgagctttAAACGCCATCCACATACATGGGAAAAGCTGCGACTGTAAAGTATCTGTTAGACTGGTGTATTTTTGGGAGATATTCGCGCTTGTAGCAGGTTCGGGCGCGGCTCAGGTAGAAGAAACCAATTATGCAGCGGGCTGTAACTAATCGCCGTTTATAATTATATCTGGACTTATATCTGGAACAGCCCTGTTAAAACATAGGATGACATTGCtgtattttatcttattattcGTGGACGgCGTGTTTGTTGCAGAAACAGATGAGACAATGTCAGTGATGGAAGGAGATTCCATCACGCTACACACTAATTATACTGAAATACAGAACGATGATACGATACTGTGGATGTTTGGACCTAAAGACTCCCTCATATCTCAAATAACAAGAAAAGGAGATTTTACCTCATTTTTTGTCACTGATGATGTGGGATTCAGAGGCAGATTGCAGGTGGATCAAAACACTGGCTCTCTCACCATCAGAAACACCAGAATCAAACACTCAGGAAAATATAAAGTAACCATCTCTAGTGAAAGCATCACAACCAAGAAATTTAACGTTTTTGTAATTGGTGTTGTTGGTGAGACGGGTGGAGTGAAGTCAGTGTCAGTGATGGAGGGACATTCTGTCACTCTACAGGATTATATTCCTGAAGTACAGCAAGAAGATCTAATAGTGTGGAGGTTTGGAGATAAAGGAATTCTCCTCGGTAAACTTGACATGGAAACCAAAGAGACCTCATTGAACGACGCCGATGAGAGATTCAAAggcagactgaagctggattggactggatctctgaccatcgaGAACACTCGAAGTGAACACGCAGGACTTTATGAAGTGCAGATCAGAGGCCGCGAGAGCTCACAGCAGTTCCTTGTTTCTGTAAATGCTGTTCCTGATCCGGGTCAGTCTCCGGGTGCTATAGCTGGGATAGCTGCTGCTGTTCTGGTGTTTTTGGCTGCAATTGTAGCCGCTATTGTATTTTACTATCGCCGCAAGATCTCTGAACTACAAATGCATGTGGTCGAAGAAAAGTCAGTGGCAGACGGAGATTCTGTTACTCTGAAAACCGATACTGAACTACATAAAGATGATAAGATACAGTGGTGCTATATAGAAGACAACAATCTCGTCGCTGAAATCAGTGGAGCGGCCAGTAAAAGAACATGTGATGGTGTTGATGGGAGATTCAGAAGCAAACTGGTGCTGAATAAGAAGACTGGAGATCTCACCATCAACAACATCATGCTTAATCACTCCGGACTCTACAAACTCAAGATCaccagcaaaaacaaaataacagaaaagagATTCGTTCTTACCGTCGAAATGAGGACCGTGTCAGCGATGGTGGGAGAGCAGGTCCATTTATCAACAGAGATTGAAGTACAAAGCGATGATCTGGTATTGTGGACATTCGGAGCTGAAAACAATCTCGTAGTTAAAGCTGATTTAGGATCGATTAGCACTGGTGCGAGATTCAAAGAGAGACTGGAACTGGCCGAGAACACTGGATCTCTGATCATCAGAAACATCACAATTGCAGACTctggacattttaaactccaggTCATCAACAGCAAACAGAGCCGATTCAAGAGATTCCATGTGACTGTCACTGATTCCACAGTAAACAGAATCAGTGAATCAATTGGATCGATTGAACTGAAGCCCATGCTGAAAGGAGAGGAGAAATAAGTGAAAGAGCGTCAGGGGACAAGTTGAGTCTAATAAGACACGGCCACCAGTGCCACCAATACATTCGCAACAATCGCACTCAATAatatatttctgcttttatgATAAGGAGAAAATAACCTGTAATAATGCTGTTTCATTGAGAAATGAATCATGTTTGAGAACAAATATAGGCCATAGTgaaataatagtttattttatgtacACTGCTTGAGTTGataatgattcagtgactttAATGAATCGATGAGTCAAATATTTAACTTGCTAATCTGTAATATAGACTCTCATTTATCGCCACCTATTGACATAGGTTTATAGAAATAGTCATTTTTTTGAATGACTGTATTATTTATGCCATTTATGGTACTACTATTTTCTCCtggacacattttattttggggcTTTGTGGCAAGTTTTAGCCTATTGAGTGCATGacctaaaattctaaaatatattttgagactgaaagatgttttattttttcaagtgTAACACTATTTTCAAATGCACACATGTCTTTAGGTCGTAAACTTATAGATTTGTAAATATAGGAAGAAGGGAAATTAGAACAATGACTGTGATTGACCATGAAGttaagcaatgcatattattaaaaaaaaaaaaaaaaaaaaaaaaatatttatttaaaataatttgtttatcattatggcattttaataaatttttacttaattttaatttttttgtataaaataacttGTCCTTAAGTGTCCATTCTCTTTTAAGTCAAATTCGTACATTTAATCAGTGAATTAAAATACTAagtttttagatttagatgCAATTTACTCACTTTAGATGTATTTACTCACTGTTTAAAGACATTGATGCATTTAACCtacaattacatatttataaataatgtttttttatatataataaacataaaacgctgaatactgatatttgaaatgaaaagataCTCTGAATATAAAATTAGAAACcaccagtagatggcagcaaGTCACTGTTACAGTTTTTTACGATCAATTTTGCACTAATAACAGAACCATCCTGACATTTTTCATTCAACTAAAACCAATGGTTCAACATGACATAACACCAAAGTGGCCTATTTACtgtttactatttactatttactgTTACAAAATGCAACAAGAATTGCAAGATCTTGCtacaaaaaaatagataattttATGAACTTACAAGCAACTGgcaaaaaacaagcaaagatGCTTCGCTTATTATAAATAGATATGGCAACATTGCAAGAGCGAGTATAGCCTTCAGCATTCCCATAGGAagggcatttaaaaaaaaaaattacgggTTTCATTTTGTCACACGCGTGtactctgtgttgttgtttttgtctctgtgtgccctaccttccgttcctgttaattgtatctTTGTCTTCATCTGTGTcttttaatttagtcaattactttgtatttattccctgtgtgtttcagctccATCGATGTTTTTCTGCCTACCTGCCCGAGGTTCGGCGACAGAATGAAGCTAaatcagactggatctctgaccatcaagAACATGAGAACCAAACACTCTGGACTTAATGAACTACAGATTGATGGCAAAAATGGGACCTCATATGAGAAATTCAGAGTTCATGTCTACAAGTCTCCATCTGAAGATGCTGTTATTGATGCCGGTGAAGCTGAAATGAAGACCATGTCAGTGAAGGAGGGAGATCTGGTTGTTCTTCAGACTAATGTTACTGAAATATATGGTGTGCCTCAGTCAAGTCCTGGCTGATATAGAAGATTGCTAACACTTACTGTTAATGGGTTTTGGGTATTAGCTTTTCCGATTACCAGACAAAACAGATATTTTCTGTCAGGATCTGGTTTCAAGGATATGTACAGAcatggacaaaattgttggtaccctttgggcAATGAAGGAAAAACAACGGTCACAGAA

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222657.1 False 3357 mRNA 0.37 7 5147883 5153856
XM_043222659.1 False 3430 mRNA 0.37 7 5147883 5153856
XR_006247637.1 True 3759 transcript 0.37 10 5145926 5153856

Neighbor

gene id symbol gene type direction distance location
LOC122327332 NA coding downstream 22675 5114167 ~ 5123251 (-)
LOC122327498 LOC107740712,LOC107755677 coding downstream 35265 5108760 ~ 5110661 (-)
LOC122328166 NA coding downstream 37375 5107353 ~ 5108551 (-)
LOC122327526 NA coding downstream 59414 5084840 ~ 5086512 (-)
LOC122327494 NA coding downstream 74854 5060198 ~ 5071072 (-)
LOC122327503 LOC107575528,LOC107709688,LOC107741386,LOC107568440 coding upstream 29085 5182941 ~ 5184286 (-)
LOC122327497 LOC107659626 coding upstream 125622 5279478 ~ 5280923 (-)
LOC122327315 NA coding upstream 173430 5327286 ~ 5341934 (-)
LOC122327308 NA coding upstream 182868 5336724 ~ 5351569 (-)
LOC122327319 NA coding upstream 197359 5351215 ~ 5355113 (-)
G150000 NA non-coding downstream 3747 5141247 ~ 5142179 (-)
G149955 LOC107698556 non-coding downstream 103999 4932449 ~ 5041927 (-)
G149962 NA non-coding downstream 142237 4991610 ~ 5003689 (-)
G149963 NA non-coding downstream 146750 4991961 ~ 4999176 (-)
LOC122327586 NA non-coding downstream 180153 4957401 ~ 4965773 (-)
LOC122327581 NA non-coding upstream 7516 5161372 ~ 5167342 (-)
G150008 NA non-coding upstream 23833 5177689 ~ 5181252 (-)
G150017 NA non-coding upstream 47466 5201322 ~ 5204007 (-)
G150025 LOC107683790,LOC107563976,LOC107744761 non-coding upstream 64979 5218835 ~ 5226874 (-)
G150033 NA non-coding upstream 78315 5232171 ~ 5235460 (-)
LOC122327545 NA other downstream 409066 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 557504 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 659001 4482821 ~ 4486925 (-)
LOC122327456 NA other downstream 712426 4428805 ~ 4433500 (-)
LOC122327462 LOC107741386,LOC107698560 other downstream 864158 4272551 ~ 4281768 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other upstream 373374 5527230 ~ 5532809 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other upstream 384700 5538556 ~ 5542080 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 484282 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 507885 5661741 ~ 5672809 (-)
LOC122327537 NA other upstream 604150 5758006 ~ 5763982 (-)

Expression


Co-expression Network