ccdc51 (ccdc51,LOC107702652,LOC107712177,LOC107698574,LOC107718461,LOC107577765,LOC107549370)


Basic Information

Item Value
gene id ccdc51
gene name ccdc51,LOC107702652,LOC107712177,LOC107698574,LOC107718461,LOC107577765,LOC107549370
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3220932 ~ 3223501 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222697.1
TCCAACATGTCAGCCTCGCGGTTTcgttttaaatctttaaatatccACGCTGTTATTTGTTTTCAATTATTGGTTGGTCGAGTCGGGTGAATTATTTGGGAGTCGGTTCGCTTGAATCGTAAAAAAAGATTCTATCCAAAAGAGCAGCAGCTAGTGCCTGATAGAAATGCGCTCATGCCGCAGGATGACATTTCGGTGAATTAGACATATATGTATTATACTGTAAAGCCTGTAAACATGAGAAGTTGGTGACCCGAGCAGAAACGACGAGAAACGGAGAATCACTGTATGTTTACAGGTTGTATATTTTTCAGGCTCTTCAATGAGGTTCAGAGGGAACGCTGTATTTCCAAGCAGCTATGTCTCCACATGTCTCCACCGACACCAGGGGTCCGGCCCGGTCCAGCGTGGCCTCCACAGAACTTATTGCACCCAGCAGCAAAGTCCGAAAGATGAGCCGAATAAAGTGACCTCCGTTAAAGAGCACACAGCCTCTGCGTTGTCGTACGCAGGAACCCTGGGAAGGCAGTGGGGGCGAAACGCAGTGAAAACCACGACAGTGACCGTCAACTACTGGTGGGAGCGATATGAGGAGTTTGTCGGGCTTAATGAAGTCCGGGATGCTCAGTCCAAGGTCACGGAGGCTGAAAAGGCCTTCATGGTCGCCAGAGGAATCGTCCGGGAAGCTCACGGCAGTCTGGAGGCTCTCCAAGTCCGGCTGAAGGAAGTGAGGGACCGCTTGGACCGCGTTTCTCGTGAAGAAGCGCATTATTTAGAGTTAGCAACACTGGAACATAAGTTACTGCAGGAAGAACGGCGTCTCAGAACCGCCTATGAGAACGCCGAAGAAGGCGAGCGAGAGAAGTTTGCGCTCTTTTCCGCTGGCGTGCGAGAGAGCCACGAGAAAGAAAGGACCAGGGCCGAACGGACCAAAAACTGGTCCATCATCGGTTCGGTTTTGGGCGCCGTCATTGGCGTGATGGGCTCCACTTATATAAACCGTGTACGTTTGCAGGAGCTCAAGAGCCTGCTGCTGGAGGCCCAGAAGGGACCGGTGAGTCTGCAGGAGGCCATCAAGGTCCAAGCCAGCATGCATAAAATGCAACAAGACGAGCTCAGCAATCTCATCGAATCACTCAGGGCGGCTTTAAAAGGCAGCGTAGATGTGAAAGCGGTCAAACCCGCGTTCGTCCCGCCAGCGGTGGCGGCCGCCTCCGTCGTCCCAGCCTCCAGGGCCTCAGAAGAAGCGCTCCGAGAGATCCTCCAGCACAGCCAAAGAGCCCAAGGGCTCATCGAAGGCCTTAAACCGCAGCTGGACCAGCTCGGGGAGAACGTGGGGAAGGTCGAGAACGAGCTGCGAGCCTTCAAGACGACCCTACAGTCACGTCCCGTGGAGAAGCCGGTCATCCAGACCCGAGACACGCAACTCTTTGTGTGCGATACGGAGACCGTCGTTCAAGGCCTCGGCCAGACTGAGAAAAGACTGGAGGCGCAGATTAACAAAACAAGTCAATACAATACAGTCTTGACGTGTGCCGCGTTCGCTGTGACCGTGCCAGTTCTGTACATACTTTTGAGAGGGACTTGAAAAGCATGCAGGCAGTGTGCGCTTGAGGGGCCAATTAATACACCAGAGAATAATATAACTGAAAAGTACAATTATTGTCCAAGGTTGTGAAAGATTGATTAAATATTGTCGGTTCTAAGTA
>XM_043222698.1
TCCAACATGTCAGCCTCGCGGTTTcgttttaaatctttaaatatccACGCTGTTATTTGTTTTCAATTATTGGTTGGTCGAGTCGGGTGAATTATTTGGGAGTCGGTTCGCTTGAATCGTAAAAAAAGATTCTATCCAAAAGAGCAGCAGCTAGTGCCTGATAGAAATGCGCTCATGCCGCAGGATGACATTTCGGTGAATTAGACATATATGTATTATACTGTAAAGCCTGTAAACATGAGAAGTTGGTGACCCGAGCAGAAACGACGAGAAACGGAGAATCACTGGCTCTTCAATGAGGTTCAGAGGGAACGCTGTATTTCCAAGCAGCTATGTCTCCACATGTCTCCACCGACACCAGGGGTCCGGCCCGGTCCAGCGTGGCCTCCACAGAACTTATTGCACCCAGCAGCAAAGTCCGAAAGATGAGCCGAATAAAGTGACCTCCGTTAAAGAGCACACAGCCTCTGCGTTGTCGTACGCAGGAACCCTGGGAAGGCAGTGGGGGCGAAACGCAGTGAAAACCACGACAGTGACCGTCAACTACTGGTGGGAGCGATATGAGGAGTTTGTCGGGCTTAATGAAGTCCGGGATGCTCAGTCCAAGGTCACGGAGGCTGAAAAGGCCTTCATGGTCGCCAGAGGAATCGTCCGGGAAGCTCACGGCAGTCTGGAGGCTCTCCAAGTCCGGCTGAAGGAAGTGAGGGACCGCTTGGACCGCGTTTCTCGTGAAGAAGCGCATTATTTAGAGTTAGCAACACTGGAACATAAGTTACTGCAGGAAGAACGGCGTCTCAGAACCGCCTATGAGAACGCCGAAGAAGGCGAGCGAGAGAAGTTTGCGCTCTTTTCCGCTGGCGTGCGAGAGAGCCACGAGAAAGAAAGGACCAGGGCCGAACGGACCAAAAACTGGTCCATCATCGGTTCGGTTTTGGGCGCCGTCATTGGCGTGATGGGCTCCACTTATATAAACCGTGTACGTTTGCAGGAGCTCAAGAGCCTGCTGCTGGAGGCCCAGAAGGGACCGGTGAGTCTGCAGGAGGCCATCAAGGTCCAAGCCAGCATGCATAAAATGCAACAAGACGAGCTCAGCAATCTCATCGAATCACTCAGGGCGGCTTTAAAAGGCAGCGTAGATGTGAAAGCGGTCAAACCCGCGTTCGTCCCGCCAGCGGTGGCGGCCGCCTCCGTCGTCCCAGCCTCCAGGGCCTCAGAAGAAGCGCTCCGAGAGATCCTCCAGCACAGCCAAAGAGCCCAAGGGCTCATCGAAGGCCTTAAACCGCAGCTGGACCAGCTCGGGGAGAACGTGGGGAAGGTCGAGAACGAGCTGCGAGCCTTCAAGACGACCCTACAGTCACGTCCCGTGGAGAAGCCGGTCATCCAGACCCGAGACACGCAACTCTTTGTGTGCGATACGGAGACCGTCGTTCAAGGCCTCGGCCAGACTGAGAAAAGACTGGAGGCGCAGATTAACAAAACAAGTCAATACAATACAGTCTTGACGTGTGCCGCGTTCGCTGTGACCGTGCCAGTTCTGTACATACTTTTGAGAGGGACTTGAAAAGCATGCAGGCAGTGTGCGCTTGAGGGGCCAATTAATACACCAGAGAATAATATAACTGAAAAGTACAATTATTGTCCAAGGTTGTGAAAGATTGATTAAATATTGTCGGTTCTAAGTA

Function

symbol description
ccdc51 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CCDC51 (coiled-coil domain containing 51).

NR:

description
LOW QUALITY PROTEIN: coiled-coil domain-containing protein 51-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222697.1 True 1709 mRNA 0.52 4 3220932 3223501
XM_043222698.1 False 1682 mRNA 0.52 4 3220932 3223501

Neighbor

gene id symbol gene type direction distance location
mcm2 mcm2,LOC107718478 coding downstream 440 3213764 ~ 3220492 (-)
podxl2 LOC107702650,LOC107566349,LOC107712169,LOC107698566,LOC107718457,LOC107549351 coding downstream 7941 3196422 ~ 3212991 (-)
LOC122328126 LOC107702631,LOC107566362,LOC107698575,LOC107549383,LOC107712181 coding downstream 31049 3188034 ~ 3189883 (-)
LOC122327372 NA coding downstream 35459 3181114 ~ 3185473 (-)
LOC122327365 LOC107586973 coding downstream 43352 3170335 ~ 3177580 (-)
wu:fc11c11 LOC107702623,LOC107566345 coding upstream 15608 3239109 ~ 3243922 (-)
LOC122327520 LOC107694008,LOC107712191,LOC107566346,LOC107718469,LOC107698588,LOC107591183 coding upstream 28612 3252113 ~ 3253715 (-)
LOC122327437 NA coding upstream 49634 3273135 ~ 3277399 (-)
LOC122327353 NA coding upstream 57108 3280609 ~ 3286516 (-)
LOC122327550 NA coding upstream 67009 3290510 ~ 3305204 (-)
G149071 NA non-coding downstream 26128 3193288 ~ 3194804 (-)
G148927 NA non-coding downstream 118035 3102579 ~ 3102897 (-)
G148906 NA non-coding downstream 175515 3041452 ~ 3045417 (-)
G148889 NA non-coding downstream 236995 2874411 ~ 2983937 (-)
G149074 NA non-coding upstream 10171 3233672 ~ 3235759 (-)
G149076 NA non-coding upstream 18920 3242421 ~ 3242805 (-)
G149081 NA non-coding upstream 27748 3251249 ~ 3251471 (-)
G149111 NA non-coding upstream 126592 3350093 ~ 3353485 (-)
G149114 NA non-coding upstream 126953 3350454 ~ 3351474 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other downstream 155755 3051400 ~ 3065177 (-)
gpr35.2 NA other downstream 970371 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 1104749 2114320 ~ 2116183 (-)
G148613 NA other downstream 1556305 1661185 ~ 1664627 (-)
G148574 NA other downstream 1566592 1643710 ~ 1654340 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 647 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 31895 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 102074 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 154531 3378032 ~ 3451429 (-)
G149102 NA other upstream 164759 3388260 ~ 3414711 (-)

Expression


Co-expression Network