rad23ab (rad23ab,LOC107717165,LOC107704496,LOC108271249,LOC107702626)


Basic Information

Item Value
gene id rad23ab
gene name rad23ab,LOC107717165,LOC107704496,LOC108271249,LOC107702626
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2880554 ~ 2887494 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222699.1
CTTAGGGGTCACTATACGTCCGTAGGTCCACGTCTCCATGTGTCTTGTCCAATTCAGCAAGTAGATGGCGTCTTCCCGTAACACAGGCGCCTCATCCCTCCTGAAGATAGCTGAGTCACATCTCCACGCGCGCTCATCGAAGGCACTTCGTGTATTTCGTGGGGTCTCGCGCTCGAACAACAATGCTGACGATCACTCTGAAGACCCTCCAGCAGCAGACGTTCAAAGTGCAGATAGACGAGGAGCTGACGgTAAAAGCTCTTAAAGAGAAGATAGAGGAAGAAAAGGGGCAAGATGCTTTTCCAGCTGTCGGTCAAAAACTAATCTATGcagGCAAAATTTTGAATGACGATATACCTCTAAAAGAATATAAGATAGATGAGAAGAACTTCGTCGTGGTGATGGTTACAAAGTCCAAACCTGCAGCACCTTCACAAGCTCCTGCTCCCGCGCCGGCAGCTGCCGCTACCGTTAGCGCAACTGTCGACGAGACCCCTGAACACACGCCCTCAACTCCCGCTGCGCCTCCTGCTGCATCTACAGTGCCTGTATCGGCCCCCGCTCCCGCTCCCATAGAACCGGCGGCATCAGCGGAGCCCGCACCACCCGTCACAGCGCCCCCTGCTGCGTCGGAGCCCGCTGAGGACAAACCTGAGCCTGTTAGCGCGACTCCCGCTCCGATCTCAGAGGAGGAGAACCAGGAAGCCCAAGAGGAGCAGGCCATCGCCCAATCAGAGGCCAGCATTACAGATGATTTGGGTCTTTTAGAAGCAGCCGCCTCCATACTAGTTACAGGTCAAGCGTATGAGAATTTGGTTGCGGAAATCATGTCAATGGGTTATGAGAGAGAGCAGGTGATCGCCGCTTTACGAGCGAGTTATAACAATCCGGACAGAGCCGTGGAGTACCTGCTTATGGGTATTCCCACAGAATCGGAGCAGCCGCCGCAGGAAGTAGTGCGGCCCACGCCGGTGTCCAACCCCACCCCTCCAGCACCACAGAGACCTCAGCCGCCGCCCGCCGCAGCCGGTGCGGAGTCGGGAGCGGCGCAGGCCTCGGCGAACCCGCTGGAGTTCCTGAGGAACCAGCCTCAGTTCCAGCAGATGCGTCAGATCATCCAGCAGAACCCGGCTCTGCTCCCGGCGCTCCTGCAGCAGCTCGGCCGAGACAACCCCCAGCTCCTGCAGCAAATCACGCAGCATCAGGAGCGATTCGTGCAGATGTTGAACGAGCCGCACGGAGGCGAGGCCGGAGCCGCTGAAGCTCCCAGCGCACCACATACCAACTACATCCAGGTCACGCCGCAGgagaaggaggccatcgagagGTTAAAAGCTCTGGGGTTTCCAGAGGGACTCGTCATCCAAGCCTACTTCGCCTGCGAGAAGAACGAAAACCTCGCCGCAAACTTCCTGCTCCAGCAGAACTTTGACGATGAGTGAACGTTAATCGATTAGACGCAACAACACTCGGAGGACGGCGACGGAGAGAATGCAAGCGATAGGCCGCATgttgcgcgcgcgcgtgtgtgtgtgtgaatgtgtgtgttaaagtgaaTAGGGGAATGACTGGTCTTCCATGATGACTTTCATGGAGTTTAAACTGAAGCCATGATGTGACGTTATTATCAgcttaatttttgtatttttttttctagatataGCCGATTCTTTACGACGAGGTGTCCGTTGTCTGTCTGGTTTCTGCTGCTATCTCTGCTGTGTGTCGAGTGAGGTTTTATTTATCACAGTTTAAAccctgccaaaaaaaaacaaaaactctcaAGGTCACCACTCATTTCTCGCAGTTGTTTTTTAGGATTAACAATGAGACATTTCAGTTAAAGTAGATGCCAAATTGAATTTGTCGCCAATGACAGACTCACGTCTTTTTAACACGTTGTACCATTTTTGTTGCGTTTTCACAACTGGAACATTTTTGGAAAAGTCAAATTAAACATGGTGTCTACTTATGCCATGTTAtctcattttcagtgtttaattttctttcGTTTTGAGCCtatactgtttaaaatacaatgtttatgCAGTGGACGTTACATTAAaccattaatattcaaaaaatgaaCAACATGTTCTGCACTGCATGGGTATGTTAGTATCTTTAAACCCATGTTTAAAACAAGAACCGTCAATAACGTCTACGATCATCAGTTATTGGTAAAAAACAGCACTGATATGTGACAATCTAGTTGGCTAATTAACTATATCTGTTTTTTGATATgtttaacaaaactaaaaatctgtcatcatttattctgtttctttaaCACAAAATTAGACATCTGAAGAACGTTGGTAACCAAAAATGTAATGGTAGCCATTGCTTTTCatagtatggaaaaaaatatgatgaaagtcaatggctacccTCAACTATATATAAACAGGTGATGGTAGTCATTGATTTCCATAgtgttctgtttcttttttcgtGCTATGCAAGGCAATTGCTGTCATCGATTATTTGGTTATGGTTGACAATAGTATATTATAGTATCCATAGTAAAGtatcgagaaaaaaaaatgacttccaTTGTTTTTCTCCCCAATACTATAGCTATCTAAATAAAACGCTATGATAATCAATGGCTACTGTCAACTGTATGGTTGccgttgacggtagccattgatttccatagtgTTTTCTTTTCCATATGAATGAAGGCAATAGtaacagtatgaaaaaaaaataaggaagcCAATAGCTGCTATCATCTTTCAGCTCTAACCAAAGAGATGATGGTAGCCATTAGCATCCATAATCTTTTTCCCATACCATGGAGGGCAATGGCTACCGTCAGTTGTATCCAAACTGTTGACAGTTGACTTCGATAGCGTTTTATTTTCTATACTATGAAAGGCTGTGTTTGGTTACATAGAATAGTATGGGAAGTAAAAAATGGAAGCCAATGGCTACCATTTTCTGTCAACTGTAACCAAACGGCTGACTAGCTATTGGCGTCCATAgtgtggaaaaataaatactatggaaatcaatggcTAACTGTTGGATTACCAACGTTCttctcatttttaattgttaattttaacttttttggtgaactatccctttattaACTCTAAAGTTCACCCTAGAGCCAGTTCAGTATGCAGTAGAAACTGAATGAGCAGTGGTTTTGAATGGAGCCCGACATGCTGCAACCATTGTAGGTATTTTATGTGGTTAAGCAACTGAATGTGGTCGATCGTCTCAGCGGGTCTCGAAAACctcacaaaaatatgcattgtaatttgaatatttgtatattCGAGTGAAGGAAAAAACTGTGTTGTCTTGGTCTCTGTTGCACACTTAAGACAGTGCCAAACATAATTAGAAACTGGAACTAGATGAAATTACAGAGCTAGCTGCAATGCTTGAAGTGGATGCAGAacgcatatatttttatatgaatgatGTGTCCTGCTCCTATAAGGCTAGTTTTGAGTTAAAAATGCTGGAAGGGTATTTTTATCaagtatgtaaaaaatgtataggTGTTCTGAAAGGTACAAGCAAGACTAAGCGTCCTGTTTACACTAAGTGATGCAGTTTGGGTTTTTCAGTTCtgcattttatatcattttttcgTCTTGGGGGATTTGATTTGTGGAGAACGTGAACATGGAGGAGTTTGGTCTTAAATGCAACAGCACATGAGGGTTTGCCGAGTGATTTATGAATGTATTGTTTCAGTGGTGTGtgaaataaattgcttttaaaaagcttaaa

Function

symbol description
rad23ab Predicted to enable polyubiquitin modification-dependent protein binding activity; proteasome binding activity; and ubiquitin binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within nucleotide-excision repair. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol and nucleoplasm. Orthologous to human RAD23A (RAD23 homolog A, nucleotide excision repair protein).

NR:

description
UV excision repair protein RAD23 homolog B-like

GO:

id name namespace
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0003684 damaged DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222699.1 True 3756 mRNA 0.44 10 2880554 2887494

Neighbor

gene id symbol gene type direction distance location
trnad-guc_19 NA coding downstream 149 2880334 ~ 2880405 (-)
trnad-guc_18 NA coding downstream 919 2879564 ~ 2879635 (-)
LOC122328226 LOC107549362,LOC107704491,LOC107742801 coding downstream 1733 2876058 ~ 2878821 (-)
fbn2b fbn2b,fbn3,LOC107704489,LOC107742800,LOC108441289 coding downstream 30995 2784678 ~ 2849559 (-)
uhrf1 uhrf1,LOC107561590 coding downstream 131964 2735159 ~ 2748590 (-)
calr3a calr3a,LOC107702625,LOC107717161,LOC107561598,LOC107549384,LOC107704500,LOC107742789 coding upstream 688 2888182 ~ 2891766 (-)
LOC122328125 LOC107570673,LOC107575767 coding upstream 53510 2941004 ~ 2949697 (-)
LOC122327343 NA coding upstream 63640 2951134 ~ 2953797 (-)
LOC122327346 NA coding upstream 75737 2963231 ~ 2972360 (-)
LOC122327311 cherp,LOC107742793,LOC107753747 coding upstream 90157 2977651 ~ 2988298 (-)
G148860 NA non-coding downstream 120867 2698113 ~ 2759687 (-)
G148749 NA non-coding downstream 287825 2591572 ~ 2592729 (-)
LOC122327855 NA non-coding downstream 317331 2527094 ~ 2563223 (-)
LOC122328197 NA non-coding downstream 356252 2518437 ~ 2524302 (-)
G148707 NA non-coding downstream 723737 2156256 ~ 2156817 (-)
LOC122327605 NA non-coding upstream 8466 2895960 ~ 2898650 (-)
G148906 NA non-coding upstream 153958 3041452 ~ 3045417 (-)
G148927 NA non-coding upstream 215085 3102579 ~ 3102897 (-)
G149071 NA non-coding upstream 305794 3193288 ~ 3194804 (-)
G149074 NA non-coding upstream 346178 3233672 ~ 3235759 (-)
gpr35.2 NA other downstream 629993 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 764371 2114320 ~ 2116183 (-)
G148613 NA other downstream 1215927 1661185 ~ 1664627 (-)
G148574 NA other downstream 1226214 1643710 ~ 1654340 (-)
LOC122327997 NA other downstream 1266016 1583015 ~ 1614538 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other upstream 163906 3051400 ~ 3065177 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 336654 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 367902 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 438081 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 490538 3378032 ~ 3451429 (-)

Expression


Co-expression Network