calr3a (calr3a,LOC107702625,LOC107717161,LOC107561598,LOC107549384,LOC107704500,LOC107742789)


Basic Information

Item Value
gene id calr3a
gene name calr3a,LOC107702625,LOC107717161,LOC107561598,LOC107549384,LOC107704500,LOC107742789
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 2888182 ~ 2891766 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222701.1
GAGCGCCATTCATTATCACACCGGGATCTTCTTCTACTTCGGGTCGTTGGACGGTGCAGAGATGCGGGTCGCTGCTGCAGTGTGCTTCTCCGCCCTGGCGTTTGCCGCGTATGCAGACGTGTATTTCAAAGAGCAATTTCAGGACGGAGATGGTTGGAAAAGTCGATGGGTGGAATCCAAACACAAATCCGACTACGGCCAGTGGAAACTGACCTCAGGGAAATTCTACGGCGATGCTGAGCTCGataaaggtCTGCAGACGAGTCAGGACGCCCGGTTTTACGCTCTATCCAGTCGCTTTGACTCGTTCAGTAATGAGGGTAAACCGCTTGTCGTCCAGTTCACTGTGAAACATGAGCAGAAGATCGACTGCGGTGGTGGGTACGTGAAGATTTTCCCCGCCGACCTGGACCAGAATGATATGCACGGCGAATCGCAGTACTACGTCATGTTCGGACCCGACATCTGTGGCTACAGCACCAAGAAAGTTCACGTCATTTTCAACTACAAGGGCCAGAACCACTTAATCAAGAAGGACATCAAATGCAAAGACGATGAACTCACGCACCTGTATACGCTGATCCTGCGGCCAGACCAGACGTACGAAGTCAAAATCGACAACGAGAAGGTAGAATCGGGTTCTCTGGAGGAAGACTGGGATTTCCTTCCATCAAAAAAGATCAAGGATCCCGAGGCCAAGAAGCCAGAGGATTGGGACGACCGGGCGAAAATCGACGATCCCGAAGACACAAAACCTGAGgatTGGGACAAACCCGAGAACATTCCCGACCCTGATGCCAAGAAACCAGACGATTGGGATGAAGACATGGATGGAGAATGGGAACCCGCCATGATCCCGAACCCAGAGTACAAGGGTGAGTGGAAACCAAAACAGATCGATAACCCCAACTACAAAGGCACCTGGATTCACCCCGAAATCGACAACCCTGAATACACTCCAGACGACTCCATTTACAAATTTGAGAACATCGGCATTCTAGGACTGGATCTTTGGCAGGTAAAAACTGGAACGATCTTTGATAACTTCCTGATCACCGATGATGTTGAGGAGGCTGAAAAATTTGGTACAGAAACGTGGGGTGCAACAAAGggaccagaaaagaaaatgaaggacctgcaggaagaggaagaacgGAAGAAGCGTGAAGAGGAGGAAAAGAGCAAGAAGGATGACGATAATGAGGACGAGGACGGTGAAGATGAGGATGAGCCAGAAGAGGATGAGCACACAGAAGAACctcctgaggaggaagaggaggatgaggacgaTACGCTCCCTAAAGACGAGTTGTGAAGAGTAGTTTCCTTCTGAATGAGCAGATCTGATGTGTTTCTGatgtctttttctttatatatgtgGTGTGAATTTTTGGCCCTGCCCTTTTCTAGAAACATGTCGCATCTTGTAACTCTGatttcttttggttttgctGCTAGAAGCCCCCACCCACCCAACACATTTATAGTACGACCTGATAACTTTAGATTAATTAATGTTTGGGTTTCTGTTCTGTCTCGAGTTGCGCAAGGTGAAATTCTAATGTATCATTTGTTGGatttgcacttttttaaaataaatgatttatttttaaa

Function

symbol description
calr3a Predicted to enable calcium ion binding activity. Predicted to be involved in protein folding and ubiquitin-dependent ERAD pathway. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum membrane. Is expressed in several structures, including axis; cardiovascular system; hatching gland; periderm; and polster. Orthologous to human CALR3 (calreticulin 3).

NR:

description
calreticulin

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222701.1 True 1614 mRNA 0.47 10 2888182 2891766

Neighbor

gene id symbol gene type direction distance location
rad23ab rad23ab,LOC107717165,LOC107704496,LOC108271249,LOC107702626 coding downstream 688 2880554 ~ 2887494 (-)
trnad-guc_19 NA coding downstream 7777 2880334 ~ 2880405 (-)
trnad-guc_18 NA coding downstream 8547 2879564 ~ 2879635 (-)
LOC122328226 LOC107549362,LOC107704491,LOC107742801 coding downstream 9361 2876058 ~ 2878821 (-)
fbn2b fbn2b,fbn3,LOC107704489,LOC107742800,LOC108441289 coding downstream 38623 2784678 ~ 2849559 (-)
LOC122328125 LOC107570673,LOC107575767 coding upstream 49238 2941004 ~ 2949697 (-)
LOC122327343 NA coding upstream 59368 2951134 ~ 2953797 (-)
LOC122327346 NA coding upstream 71465 2963231 ~ 2972360 (-)
LOC122327311 cherp,LOC107742793,LOC107753747 coding upstream 85885 2977651 ~ 2988298 (-)
LOC122327522 NA coding upstream 98504 2990270 ~ 2993545 (-)
G148860 NA non-coding downstream 128495 2698113 ~ 2759687 (-)
G148749 NA non-coding downstream 295453 2591572 ~ 2592729 (-)
LOC122327855 NA non-coding downstream 324959 2527094 ~ 2563223 (-)
LOC122328197 NA non-coding downstream 363880 2518437 ~ 2524302 (-)
G148707 NA non-coding downstream 731365 2156256 ~ 2156817 (-)
LOC122327605 NA non-coding upstream 4194 2895960 ~ 2898650 (-)
G148906 NA non-coding upstream 149686 3041452 ~ 3045417 (-)
G148927 NA non-coding upstream 210813 3102579 ~ 3102897 (-)
G149071 NA non-coding upstream 301522 3193288 ~ 3194804 (-)
G149074 NA non-coding upstream 341906 3233672 ~ 3235759 (-)
gpr35.2 NA other downstream 637621 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 771999 2114320 ~ 2116183 (-)
G148613 NA other downstream 1223555 1661185 ~ 1664627 (-)
G148574 NA other downstream 1233842 1643710 ~ 1654340 (-)
LOC122327997 NA other downstream 1273644 1583015 ~ 1614538 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other upstream 159634 3051400 ~ 3065177 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other upstream 332382 3224148 ~ 3232213 (-)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190 other upstream 363630 3255396 ~ 3273051 (-)
si:rp71-36a1.1 NA other upstream 433809 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 486266 3378032 ~ 3451429 (-)

Expression


Co-expression Network