cers5 (cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190)


Basic Information

Item Value
gene id cers5
gene name cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462,LOC107712190
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 3255396 ~ 3273051 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222719.1
TTCACATGTGACcgacaaacaaatataaaatatattatctgACAAAGTTGACTTGACGGAAATGAAGAAGACCTGAATTTGTAGGCATTTCATCagatacaaaacaaacataaaaataaagcttttattcaagagttatatttaaatatttttatatatggtTTATAACACAAAATATGGGGGTGACATCTTacggtgttaaaaaaaatcgcAATTTCATTGACAAAGTAAATAGTTTGTAGcagccattttgtttttgttttttctgttgacGCTAGATGCTAACGGAACTGCTTCAGGAGAATAAAATGATcagaatatttcaaataattgcattagattttaataaatgtcttgtGGCCCTACAAAAAGCATATGGACACAACTTCGAAACCtttataaacttttaaataaataaataaaaacactttactccaaaaaaacatggttaattTTTTAAGCGAAGCTTGATGTCAGTcagtaaatttatattaaaaccgCTGTTGTTCATAGTATGTCCACAACGGGGCGCCATATAACAATCGGTGAAGATGTCGTTACTATCTGATGACAGGTGTGATTCATTCGAGCGAATCGTTCGCGCGGCTAACTAAAAGAACCGATTCGAAGAACCGATTCATTTGAACGAACTATTACTATAAACAGAGTAATTTTCGCTCAAAATAGTTAGCTGGCGATGCGTGGAGCTTAACCGTTTCTAGTGTCTCAGAATCGCTCTGCCcaaaccataataataattaattcgGAGATAAAAAATCCAACACCGCGCTTACCGGCTTCAGAAAACATACCTAAACCACAACGCCCTAAAACCAACCGGAGCAGTAAATACCTCTACcctatgcattatgcattatgaaCGAGCATCTTGTGTCGTAACGTGTTGTGAGGACTACGTAGTGCGCACACTTCCTCATCACGGGTGTGGAAACACCTTCAACACGTCCACACTCATCCACACGCgcgagaggaagagagagagagagagagagagggagagagagagagggagaaaggggGCGGCGAATCGcgtattttctttctttgcgtcctctcctctctctgaaTCTCTGGTTTTCCTCCTAACATGGCTGCGCTCTCAGCCTGGTTCTGGAACGAGCGCTTCTGGCTTCCGCACAATGTCACTTGGGCGGATCTGGCCGACCCAGCGCCCGGGGTGGAGTACCCCAAAGCCGGCCACTTGCTCTCCGCGCTGCCGCTGGCCTTGGGGATCTTCGCGGTGCGGATCGTCTTCGAGAGGTGTATCGCGGGTCCATGTGCCTCCATCCTTCAGATCCAGACAGAGTTGAGTCGGAGAGCTCAGCCCaacgccgtcctggagaaagtGTTTACATCCATCACAAAGTGTCCAGACTCGAGGCACTTAGAGGGTCTTTCTAAGCAGCTGGACTGGGATGTGAGGAAGGTCCAGAGATGGTTTCGACACCGGCGGAACCAGGACAAACCCAGCACAAGAACCAAGTTCTGCGAAAGCATGTGGAGGTTTACATTCTACCTGTGTATATTTACGTATGGGATCCGTTTCCTGTGGCAGtCGCCCTGGATGTGGGATACAAGACACTGCTGGTACAATTACCCTTATCAGGTGCTGACCTCAGgcctgtattattattatataacagaaCTGGCCTTCTACTGGTCGCTCATGTTCTCACAGTTCACGGACATCAAAAGAAAGGATTTCCTCATCATGTTCGTGCATCACCTGGCCACCGTCAGCCTGATCAGTTTCTCGTATGTAAATAACATGCTGCGCGTGGGCAGCCTGGTCATGTGTGTTCACGACGCCTCGGACTTCCTGCTGGAGGCCGTAAAGTTAGCAAACTACGCCAAATACCAGCGTTTATGTGACTTCTTGTTCGTGGTGTTCGGGATGATCTTCTTTGGGACGAGACTGATCATTTACCCCTTCTGGATCCTGAACACGACGCTCTTCGAGAGCTGGGACATCATTGGGCCGTACCCGTCCTGGTGGCTCTTCAACGTTCTGCTGCTGGTCCTGCAGGTTCTGCACATCATCTGGTCCTACCTCATCGCCCGCATCGCCTTCAAAGCCATCATGAGAGGAAAGGTGTCCAAAGATGATCGCAGCGATATCGAAAGCAGCTCGGAGGAAGAAACCGACACGACACCCAAAGAGCGTCTCAAGGCGGCTTCATCCCGAGGAGAAAACGGCACCAACGGCCATTTTGGCTCCAAACCTTGGAGCCAGAACCACAACAACTGGTGACGCTCCCTTCCGCTTTGGCCTTGCGCACAAAGAACTCGTGTCCCAGAAATATCGCGACGGGACCACGTACCTCACTCCAACACCAAAAACAGCGAAACACCAACGAAATCGCCCCGCTGTGGGACTTTCGACACTCGACGGCGGAGTTTGGGGCGTCATTCCGGTGACGATGGGACAGTAATGACAATATGGCCACTACGAGAAGCTTGTGAAAGAGAAAACGATTAAATTAGTGATATTTGCATTCCCTCGTTTCCTTGTCTCGGGAGCTGAGAAGACGTTTCTTCTCTGCGcttcacatttttactgaagTCAGGGAAGAAGATCCTCTTCAGATTTTAATGGTCAGATGTACTTGAGTTTCGTTATTGCGGTTGCTTTTCTTTTCGTTCtcgttgtttgtttttggttactgatgtgtttgtaatttgtttcctgtgctgttttttcattccaccttttttatttttggagacCAAATaaggttattaaaatgaaagctgGGCCTTTGTCTTGTAATGAGATGCTTTTTGATTGAGATCGGGGTAGATTCAATTAAATAATGGTgtggcgaaataaaaca
>XR_006247638.1
GAATACACTTTCACATGTGACcgacaaacaaatataaaatatattatctgACAAAGTTGACTTGACGGAAATGAAGAAGACCTGAATTTGTAGGCATTTCATCagatacaaaacaaacataaaaataaagcttttattcaagagttatatttaaatatttttatatatggtTTATAACACAAAATATGGGGGTGACATCTTacggtgttaaaaaaaatcgcAATTTCATTGACAAAGTAAATAGTTTGTAGcagccattttgtttttgttttttctgttgacGCTAGATGCTAACGGAACTGCTTCAGGAGAATAAAATGATcagaatatttcaaataattgcattagattttaataaatgtcttgtGGCCCTACAAAAAGCATATGGACACAACTTCGAAACCtttataaacttttaaataaataaataaaaacactttactccaaaaaaacatggttaattTTTTAAGCGAAGCTTGATGTCAGTcagtaaatttatattaaaaccgCTGTTGTTCATAGTATGTCCACAACGGGGCGCCATATAACAATCGGTGAAGATGTCGTTACTATCTGATGACAGGTGTGATTCATTCGAGCGAATCGTTCGCGCGGCTAACTAAAAGAACCGATTCGAAGAACCGATTCATTTGAACGAACTATTACTATAAACAGAGTAATTTTCGCTCAAAATAGTTAGCTGGCGATGCGTGGAGCTTAACCGTTTCTAGTGTCTCAGAATCGCTCTGCCcaaaccataataataattaattcgGAGATAAAAAATCCAACACCGCGCTTACCGGCTTCAGAAAACATACCTAAACCACAACGCCCTAAAACCAACCGGAGCAGTAAATACCTCTACcctatgcattatgcattatgaaCGAGCATCTTGTGTCGTAACGTGTTGTGAGGACTACGTAGTGCGCACACTTCCTCATCACGGGTGTGGAAACACCTTCAACACGTCCACACTCATCCACACGCgcgagaggaagagagagagagagagagagagggagagagagagagggagaaaggggGCGGCGAATCGcgtattttctttctttgcgtcctctcctctctctgaaTCTCTGGTTTTCCTCCTAACATGGCTGCGCTCTCAGCCTGGTTCTGGAACGAGCGCTTCTGGCTTCCGCACAATGTCACTTGGGCGGATCTGGCCGACCCAGCGCCCGGGGTGGAGTACCCCAAAGCCGGCCACTTGCTCTCCGCGCTGCCGCTGGCCTTGGGGATCTTCGCGGTGCGGATCGTCTTCGAGAGGTGTATCGCGGGTCCATGTGCCTCCATCCTTCAGATCCAGACAGAGTTGAGTCGGAGAGCTCAGCCCaacgccgtcctggagaaagtGTTTACATCCATCACAAAGTGTCCAGACTCGAGGCACTTAGAGGGTCTTTCTAAGCAGCTGGACTGGGATGTGAGGAAGGTCCAGAGATGGTTTCGACACCGGCGGAACCAGGACAAACCCAGCACAAGAACCAAGTTCTGCGAAAGCATGTGGAGGTTTACATTCTACCTGTGTATATTTACGTATGGGATCCGTTTCCTGTGGCAGtCGCCCTGGATGTGGGATACAAGACACTGCTGGTACAATTACCCTTATCAGGTGCTGACCTCAGgcctgtattattattatataacagaaCTGGCCTTCTACTGGTCGCTCATGTTCTCACAGTTCACGGACATCAAAAGAAAGGATTTCCTCATCATGTTCGTGCATCACCTGGCCACCGTCAGCCTGATCAGTTTCTCGTATGTAAATAACATGCTGCGCGTGGGCAGCCTGGTCATGTGTGTTCACGACGCCTCGGACTTCCTGCTGGAGGCCGTAAAGTTAGCAAACTACGCCAAATACCAGCGTTTATGTGACTTCTTGTTCGTGGTGTTCGGGATGATCTTCTTTGGGACGAGACTGATCATTTACCCCTTCTGGATCCTGAACACGACGCTCTTCGAGAGCTGGGACATCATTGGGCCGTACCCGTCCTGGTGGCTCTTCAACGTTCTGCTGCTGGTCCTGCAGGTTCTGCACATCATCTGGTCCTACCTCATCGCCCGCATCGCCTTCAAAGCCATCATGAGAGGAAAGAACTGGTTTGTCTTTCCCCTCTCTAGCTGCTGGAAGCCCGTTCCCGTCTTTCAGCTTCTGTCGTGATAGAAATCTTTCGCTCTTTTTAGCTCGCTTTAGAGTCTTTCGCTCTCTGTTTCTCCAGCTGTGTCCAAAGATGATCGCAGCGATATCGAAAGCAGCTCGGAGGAAGAAACCGACACGACACCCAAAGAGCGTCTCAAGGCGGCTTCATCCCGAGGAGAAAACGGCACCAACGGCCATTTTGGCTCCAAA

Function

symbol description
cers5 Predicted to enable sphingosine N-acyltransferase activity. Predicted to be involved in ceramide biosynthetic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in endoplasmic reticulum membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including EVL; digestive system; immature eye; intermediate cell mass of mesoderm; and periderm. Orthologous to human CERS5 (ceramide synthase 5).

NR:

description
PREDICTED: ceramide synthase 5-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K23727 CERS5_6, LASS5_6; sphingoid base N-palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222719.1 True 2855 mRNA 0.45 10 3255396 3273042
XR_006247638.1 False 2377 transcript 0.46 11 3256009 3273051

Neighbor

gene id symbol gene type direction distance location
LOC122327520 LOC107694008,LOC107712191,LOC107566346,LOC107718469,LOC107698588,LOC107591183 coding downstream 1681 3252113 ~ 3253715 (-)
wu:fc11c11 LOC107702623,LOC107566345 coding downstream 11474 3239109 ~ 3243922 (-)
ccdc51 ccdc51,LOC107702652,LOC107712177,LOC107698574,LOC107718461,LOC107577765,LOC107549370 coding downstream 31895 3220932 ~ 3223501 (-)
mcm2 mcm2,LOC107718478 coding downstream 34904 3213764 ~ 3220492 (-)
podxl2 LOC107702650,LOC107566349,LOC107712169,LOC107698566,LOC107718457,LOC107549351 coding downstream 42405 3196422 ~ 3212991 (-)
LOC122327437 NA coding upstream 84 3273135 ~ 3277399 (-)
LOC122327353 NA coding upstream 7558 3280609 ~ 3286516 (-)
LOC122327550 NA coding upstream 17459 3290510 ~ 3305204 (-)
LOC122327410 LOC107712173 coding upstream 36212 3309263 ~ 3315077 (-)
LOC122327542 NA coding upstream 283081 3556132 ~ 3559814 (-)
G149081 NA non-coding downstream 3925 3251249 ~ 3251471 (-)
G149076 NA non-coding downstream 12591 3242421 ~ 3242805 (-)
G149074 NA non-coding downstream 19637 3233672 ~ 3235759 (-)
G149071 NA non-coding downstream 60592 3193288 ~ 3194804 (-)
G148927 NA non-coding downstream 152499 3102579 ~ 3102897 (-)
G149111 NA non-coding upstream 77042 3350093 ~ 3353485 (-)
G149114 NA non-coding upstream 77403 3350454 ~ 3351474 (-)
G149112 NA non-coding upstream 95099 3368150 ~ 3372307 (-)
G149117 NA non-coding upstream 104218 3377269 ~ 3449101 (-)
G149118 NA non-coding upstream 122663 3395714 ~ 3414182 (-)
dnase1l4.1 zgc:101000,LOC107566350,LOC107712182,LOC107702655 other downstream 23183 3224148 ~ 3232213 (-)
LOC122327369 LOC107566359,LOC107727552,LOC107702633,LOC107698598,LOC107549380,LOC107733351,LOC107733325,LOC107566366,LOC107727554 other downstream 190219 3051400 ~ 3065177 (-)
gpr35.2 NA other downstream 1004835 2244631 ~ 2250561 (-)
LOC122328032 NA other downstream 1139213 2114320 ~ 2116183 (-)
G148613 NA other downstream 1590769 1661185 ~ 1664627 (-)
si:rp71-36a1.1 NA other upstream 52524 3325575 ~ 3366122 (-)
LOC122327341 NA other upstream 104981 3378032 ~ 3451429 (-)
G149102 NA other upstream 115209 3388260 ~ 3414711 (-)
LOC122327463 NA other upstream 151295 3424346 ~ 3443874 (-)
LOC122328127 NA other upstream 371876 3644927 ~ 3652009 (-)

Expression


Co-expression Network