gpd1b (gpd1b,LOC107698578,LOC107721242,LOC107727040,LOC107694423,LOC107566434)


Basic Information

Item Value
gene id gpd1b
gene name gpd1b,LOC107698578,LOC107721242,LOC107727040,LOC107694423,LOC107566434
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4773807 ~ 4777213 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222770.1
GAGGCGCGTTCACGGTCTATTTAAAAGCACGCCCACAGGATTGTCTCCGGTCCGTCAGCGGCTCTCAAACACACCGAGGTCCTACAGCCGGTCCAGCCGGGACAGACGCGCAGTATGGCGGCCAAGAAAGTCTGCATTATCGGCTCTGGCAACTGGGGTTCTGCCATTGCCAAGATAGTGGGCGCCAATGCAGCAAAATACAGCACGTTTGATAACACAGTGAACATGTGGGTGTTTGAGGAGATGGTCAATGGACGCAAACTCACTGAAATCATCAACAACGAACACGAGAATATAAAATACTTGCCCGGACACAAGCTACCGCCCAACGTGTTAGCGGTACCGGATCTGTTAGAAGCAGTGAAGGGTGCAGATATTCTCATTTTCGTCATCCCTCACCAGTTTGTGTCCCGAGTCTGTGACACCATTAAGGGTCACATCAAAACGGACGCTGTGGGGATGTCCCTCATTAAGGGTGTGGATGAGGGTCCTGACGGACTGAAACTGATCTCTGATGTCATTAGGGAAAAACTCGGCATCACCATGACCGTGCTGATGGGAGCCAATCTGGCCAATGAGGTCGCGGACGAGAAATTCTGTGAAACTACCATTGGGTGTAAAAGCAAAGCTCACGGGCCCCTGCTGAAGGAACTGATGCAAACTCAAAACTTCCGTGTGACGGTGGTGGAAGAGGCTGATGTTGTTGAGATCTGTGGGGCGTTAAAGaatattGTGGCAGTGGGCGCCGGTTTCTGCGACGGTCTGGACTTCGGTGACAACACCAAGGCCGCCGTGATCCGTCTGGGTCTGATGGAGATGATCGCTTTCGCTCGGTTATTCTGCACGGCCAGTCCGGTTTCTCCCGCCACGTTCCTGGAGAGCTGCGGCGTCGCCgatctcatcaccacctgctaCGGAGGACGCAACCGCAAAATCGGAGAAGCGTTCGCTAGAACGGGGAAAACTATCGAGGAGCTTGAGAAGGAACTGCTGAACGGCCAGAAACTTCAAGGTCCGGCAACCGCAGCAGAAGTTCATCAGATCCTCAAACACAAAAACCTGGTGGAAAAGTTCCCCCTGTTTAATGCCGTTTATCAGATCTGTTTCCACGGTCACCCGGTCAAAGAGTTCATCACCTGCCTACAGAACCATCCAGAACACATGTGAACGTCATTATGGCtgttttagttgtttgttttttgttcattaacACGGTCTAAACGTTGTAAGAAAATgctaaagattttattttgcattaaatgcattataaagtcTTGTTTTAAAGTCCTACACTCTCACAAAGTGTTTTTAACATGTCCTGTTCTGTGACTCTCAGCCAACGATGCCTTAAAGTGCCTTGAGCCCCCCCAAAAGCATCGATTTTATGGAAAACTAAGTTTTATATgccataaaaacagtttttgttga

Function

symbol description
gpd1b Predicted to enable glycerol-3-phosphate dehydrogenase [NAD+] activity. Predicted to be involved in NADH oxidation and glycerol-3-phosphate metabolic process. Predicted to act upstream of or within carbohydrate metabolic process and glycerol-3-phosphate catabolic process. Predicted to be part of glycerol-3-phosphate dehydrogenase complex. Predicted to be active in cytosol. Is expressed in several structures, including intermediate cell mass of mesoderm; neural plate; notochord; ventral mesoderm; and yolk syncytial layer. Orthologous to human GPD1 (glycerol-3-phosphate dehydrogenase 1).

NR:

description
PREDICTED: glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0046168 glycerol-3-phosphate catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009331 glycerol-3-phosphate dehydrogenase complex cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity molecular_function

KEGG:

id description
K00006 GPD1; glycerol-3-phosphate dehydrogenase (NAD+)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222770.1 True 1428 mRNA 0.49 8 4773807 4777213

Neighbor

gene id symbol gene type direction distance location
LOC122327538 NA coding downstream 1064 4770578 ~ 4772743 (-)
LOC122328160 NA coding downstream 6279 4760030 ~ 4767528 (-)
LOC122327350 NA coding downstream 16375 4750241 ~ 4757432 (-)
LOC122327323 NA coding downstream 27850 4738382 ~ 4745957 (-)
LOC122327429 NA coding downstream 67948 4701963 ~ 4705859 (-)
smarcd1 smarcd1,LOC107698569,LOC107694342 coding upstream 770 4777983 ~ 4785215 (-)
asic1b asic1b,asic1,LOC107569540,LOC107727129 coding upstream 13334 4790547 ~ 4830499 (-)
LOC122327307 NA coding upstream 238878 5016091 ~ 5021442 (-)
LOC122327494 NA coding upstream 282985 5060198 ~ 5071072 (-)
LOC122327526 NA coding upstream 307627 5084840 ~ 5086512 (-)
G149594 NA non-coding downstream 92731 4679919 ~ 4681076 (-)
G149598 NA non-coding downstream 102037 4662075 ~ 4671770 (-)
G149592 LOC107729908,LOC107712186,LOC107702610,LOC107702613 non-coding downstream 147902 4625597 ~ 4625905 (-)
G149587 NA non-coding downstream 158922 4614307 ~ 4614885 (-)
G149586 NA non-coding downstream 162534 4610930 ~ 4611273 (-)
G149955 LOC107698556 non-coding upstream 155236 4932449 ~ 5041927 (-)
G149956 NA non-coding upstream 162222 4939435 ~ 4939839 (-)
LOC122327586 NA non-coding upstream 180188 4957401 ~ 4965773 (-)
G149962 NA non-coding upstream 214397 4991610 ~ 5003689 (-)
G149963 NA non-coding upstream 214748 4991961 ~ 4999176 (-)
LOC122327545 NA other downstream 36947 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 185385 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 286882 4482821 ~ 4486925 (-)
LOC122327456 NA other downstream 340307 4428805 ~ 4433500 (-)
LOC122327462 LOC107741386,LOC107698560 other downstream 492039 4272551 ~ 4281768 (-)
LOC122327354 NA other upstream 368713 5145926 ~ 5153856 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other upstream 750017 5527230 ~ 5532809 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other upstream 761343 5538556 ~ 5542080 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 860925 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 884528 5661741 ~ 5672809 (-)

Expression


Co-expression Network