LOC122327429


Basic Information

Item Value
gene id LOC122327429
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 4701963 ~ 4705859 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222787.1
ctctgctggcttggtgacacttATACATGTGCAGTGACACACTTAGAGGTCCATGTATCTTTTAATATAAACTGAGAGATATCCAGAACACCAGCAGAagcatattaatgtttaaatatatgaacAGACAGAAATGAATGaaccaaaaatgtaatctttcaCTTGTTTAAAGGTTATTTAGTCAAAGTATTTGTATTTGTCAAagtatttgtgtaaaatatgttttttaaatgcacaattataattattagatAAACCACGTGTACTGCATTTCAATCTTTGCATCTACTCATTTTGGTCATTGTTAAGATTTACTGATTGATTCAATAagtgatggatttgtttcaaaATTGACAAAAGATAACTGAGATTTGAAAGCAGCTACTGAGATAGAGGACAAATTTATTATAGCAGTTTCCATTATTTTCCGGGACCTTTCCAGATTTAAATTTCCTGAATCAATCACATCACGTGAAGATGCATATTAGATGCAAGCCTCAGTGCGAGCTCCGTCTGGTAGTACATTGCATTCTCGATACAAGCTACAAAGCCTTGATATCAAACATAACGAGGCTTTTAGTCGACATTGggacaaaaaatgcttttgtttccaCTGAATCTGCATTCGTTTGTCAGAGTAAATATGGCGAACCCCTTCATTTTCAACTGGGTCTGGCTTTTACAGCTCGGTGTATGTGGTGTTGATACAGATAGAGAGACAGTGTCTGTGGTGGAGGGAAACACAGTCACTCTTCACACGGGCGTTAAAACAAACCAGCAAGAAAAGATTAAATGGTTTTTTAATGACATTCGCATTGCCCAAATTAGTGATTATCTCAGTAAGACCTGTACAGATGTTCAGTGTAATGAAGGTactgagagattcagagacagactgaagctggatcctcagactggatctctgaccatcacgaacaccacaaccacagactctggactttatCGACTGCAAATGATCAGCAGCAGAAACATCAGTGAAATTATATTTAGCATCACTTTCCACGATGTTCCTGCTGCAGAGACAAATAAAACACGGATCAAGACAGTGAAGGAGGGAGAATCTGTTACTCTAGATCCTAGTGTAATGAAAAACCCCAAAGATTTGATGATATGGTACTTCAATGACACTTTCATAGCAAAAATCAATGGTGATCCCAGTAGGATCTGTACAGATGGTCAGTGTGAAGATGCTGGTGAGAGATTCAGAAACCGACTGAAGCTGGATCATCAGaatggatctctgaccatcactaacaccagaaacacagactctggactttatCATCTAGAGATCATcaccaacagcagcagcatcCGTCAGAACTACATTATCAGCATCTTGAGTCAAAAGAGCTTCAGTGTTCCCTTCCATAATTATCTTATGTATTTCTTTGCTGGAGGGGTATGTGTTGGTGTTCTGCTGTTCTTTGCAGGTGAAAATTTgtggttgtttgttttctgtattcgcggtgtgattttatttagtaatgacAAAATCCCATGTATAAGTGAATTTAATATAGTAATTCTATTTTAGTTAGACATTTTGTTTCAGATCGCATGCAGGAAGTCACAATgcggttttattatttaatagaaacAACCACATTTTCCCTGATAAGTTTGATCCTAAAGCATCAGATGCTGCATTACTGTAGTTTATCTAGTTCAGGATTTGTTAAACCAAAGAATATTCTGTGACATAAACATCAATCATCATTTCTGttcaatctgtttttttttttttttt
>XM_043222788.1
GCCTCAGTGCGAGCTCCGTCTGGTAGTACATTGCATTCTCGATACAAGCTACAAAGCCTTGATATCAAACATAACGAGGCTTTTAGTCGACATTGggacaaaaaatgcttttgtttccaCTGAATCTGCATTCGTTTGTCAGAGTAAATATGGCGAACCCCTTCATTTTCAACTGGGTCTGGCTTTTACAGCTCGGTGTATGTGGTGTTGATACAGATAGAGAGACAGTGTCTGTGGTGGAGGGAAACACAGTCACTCTTCACACGGGCGTTAAAACAAACCAGCAAGAAAAGATTAAATGGTTTTTTAATGACATTCGCATTGCCCAAATTAGTGATTATCTCAGTAAGACCTGTACAGATGTTCAGTGTAATGAAGGTactgagagattcagagacagactgaagctggatcctcagactggatctctgaccatcacgaacaccacaaccacagactctggactttatCGACTGCAAATGATCAGCAGCAGAAACATCAGTGAAATTATATTTAGCATCACTTTCCACGATGTTCCTGCTGCAGAGACAAATAAAACACGGATCAAGACAGTGAAGGAGGGAGAATCTGTTACTCTAGATCCTAGTGTAATGAAAAACCCCAAAGATTTGATGATATGGTACTTCAATGACACTTTCATAGCAAAAATCAATGGTGATCCCAGTAGGATCTGTACAGATGGTCAGTGTGAAGATGCTGGTGAGAGATTCAGAAACCGACTGAAGCTGGATCATCAGaatggatctctgaccatcactaacaccagaaacacagactctggactttatCATCTAGAGATCATcaccaacagcagcagcatcCGTCAGAACTACATTATCAGCATCTTGAGTCAAAAGAGCTTCAGTGTTCCCTTCCATAATTATCTTATGTATTTCTTTGCTGGAGGGGTATGTGTTGGTGTTCTGCTGTTCTTTGCAGggaaACAGTACCTAGAAGGATTCATTAAATGATCTGGTGTATTCCCCTTTCACAGAGGAAgagatttatttacagtatgtctAATTCTATCAATTATGTAGCTTTCAAACATTGTCATAAAGTGCTAACGATATGCTTATATCACACTGAGGACTTGCAATATGTTCTTAGCCCCTGGTTGTTTGGCTAACTCTAAGTGAAGCTGACATTTTCCTGTATTCAACTAACACTGAGATATTATAGCCCTGTTACACATGGTGGTCTCTACAATGGACAGCTATTCAATAATcagtttattttgcatgcatggGATCTAATGGTATAATTGCATATGCATCACTGCAGAAACTATCGCATCACTGCAGGCCGAAACccaaaatattaaaccaaaaatattccTTTTCAATTATGGATGAAGGATGAATATCTTCCCAAAATAGGACGACCTAAACTAATATATATGCCTATGTTTGTTCATATGATGTGTACATGTTTAGCACCGTGGTCGCATGAGCCTTATGGCAGAATGGACTTAACTTGACACTCTTcactataatttattttgtagattTGAAATGCACGAAAACACAGTGATAAAAAATAGTGCAAATAGCTAATGATGGGCCCTCAAAAACACTGCTTCATGATGTCTCAAGTGGACTccttttggttgttgtttttgtcttgtgccctgtgtgacctacttttagttgTCTTatcgtgttcagctgtgtctcgtttaagtatttacattgtgtatttaagtcctgttgtttcagttctgtttgtccgatctcgttgATGTATTAATGTGGTTTAGtttatctgcctgtctgcccgaggtatttctgtatatgtgcataattaaaatagttaacCTTATATTCT
>XM_043222789.1
ctctgctggcttggtgacacttATACATGTGCAGTGACACACTTAGAGGTCCATGTATCTTTTAATATAAACTGAGAGATATCCAGAACACCAGCAGAagcatattaatgtttaaatatatgaacAGACAGAAATGAATGaaccaaaaatgtaatctttcaCTTGTTTAAAGGTTATTTAGTCAAAGTATTTGTATTTGTCAAagtatttgtgtaaaatatgttttttaaatgcacaattataattattagatAAACCACGTGTACTGCATTTCAATCTTTGCATCTACTCATTTTGGTCATTGTTAAGATTTACTGATTGATTCAATAagtgatggatttgtttcaaaATTGACAAAAGATAACTGAGATTTGAAAGCAGCTACTGAGATAGAGGACAAATTTATTATAGCAGTTTCCATTATTTTCCGGGACCTTTCCAGATTTAAATTTCCTGAATCAATCACATCACGTGAAGATGCATATTAGATGCAAGCCTCAGTGCGAGCTCCGTCTGGTAGTACATTGCATTCTCGATACAAGCTACAAAGCCTTGATATCAAACATAACGAGGCTTTTAGTCGACATTGggacaaaaaatgcttttgtttccaCTGAATCTGCATTCGTTTGTCAGAGTAAATATGGCGAACCCCTTCATTTTCAACTGGGTCTGGCTTTTACAGCTCGGTGTATGTGGTGTTGATACAGATAGAGAGACAGTGTCTGTGGTGGAGGGAAACACAGTCACTCTTCACACGGGCGTTAAAACAAACCAGCAAGAAAAGATTAAATGGTTTTTTAATGACATTCGCATTGCCCAAATTAGTGATTATCTCAGTAAGACCTGTACAGATGTTCAGTGTAATGAAGGTactgagagattcagagacagactgaagctggatcctcagactggatctctgaccatcacgaacaccacaaccacagactctggactttatCGACTGCAAATGATCAGCAGCAGAAACATCAGTGAAATTATATTTAGCATCACTTTCCACGCAAAAATCAATGGTGATCCCAGTAGGATCTGTACAGATGGTCAGTGTGAAGATGCTGGTGAGAGATTCAGAAACCGACTGAAGCTGGATCATCAGaatggatctctgaccatcactaacaccagaaacacagactctggactttatCATCTAGAGATCATcaccaacagcagcagcatcCGTCAGAACTACATTATCAGCATCTTGAGTCAAAAGAGCTTCAGTGTTCCCTTCCATAATTATCTTATGTATTTCTTTGCTGGAGGGGTATGTGTTGGTGTTCTGCTGTTCTTTGCAGGTGAAAATTTgtggttgtttgttttctgtattcgcggtgtgattttatttagtaatgacAAAATCCCATGTATAAGTGAATTTAATATAGTAATTCTATTTTAGTTAGACATTTTGTTTCAGATCGCATGCAGGAAGTCACAATgcggttttattatttaatagaaacAACCACATTTTCCCTGATAAGTTTGATCCTAAAGCATCAGATGCTGCATTACTGTAGTTTATCTAGTTCAGGATTTGTTAAACCAAAGAATATTCTGTGACATAAACATCAATCATCATTTCTGttcaatctgtttttttttttttttt

Function

GO:

id name namespace
GO:0042613 MHC class II protein complex cellular_component

KEGG:

id description
ko05145 Toxoplasmosis

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222787.1 False 1771 mRNA 0.37 4 4702858 4705859
XM_043222788.1 True 1848 mRNA 0.39 5 4701963 4705365
XM_043222789.1 False 1639 mRNA 0.37 4 4702858 4705859

Neighbor

gene id symbol gene type direction distance location
LOC122327345 NA coding downstream 4668 4691094 ~ 4697295 (-)
LOC122327393 NA coding downstream 23246 4649573 ~ 4678717 (-)
LOC122327436 NA coding downstream 66736 4628572 ~ 4635227 (-)
LOC122328157 LOC107582254 coding downstream 85186 4601851 ~ 4616777 (-)
LOC122328155 NA coding downstream 117897 4581101 ~ 4584066 (-)
LOC122327323 NA coding upstream 32523 4738382 ~ 4745957 (-)
LOC122327350 NA coding upstream 44382 4750241 ~ 4757432 (-)
LOC122328160 NA coding upstream 54171 4760030 ~ 4767528 (-)
LOC122327538 NA coding upstream 64719 4770578 ~ 4772743 (-)
gpd1b gpd1b,LOC107698578,LOC107721242,LOC107727040,LOC107694423,LOC107566434 coding upstream 67948 4773807 ~ 4777213 (-)
G149594 NA non-coding downstream 20887 4679919 ~ 4681076 (-)
G149598 NA non-coding downstream 30193 4662075 ~ 4671770 (-)
G149592 LOC107729908,LOC107712186,LOC107702610,LOC107702613 non-coding downstream 76058 4625597 ~ 4625905 (-)
G149587 NA non-coding downstream 87078 4614307 ~ 4614885 (-)
G149586 NA non-coding downstream 90690 4610930 ~ 4611273 (-)
G149955 LOC107698556 non-coding upstream 226590 4932449 ~ 5041927 (-)
G149956 NA non-coding upstream 233576 4939435 ~ 4939839 (-)
LOC122327586 NA non-coding upstream 251542 4957401 ~ 4965773 (-)
G149962 NA non-coding upstream 285751 4991610 ~ 5003689 (-)
G149963 NA non-coding upstream 286102 4991961 ~ 4999176 (-)
LOC122328156 NA other downstream 113541 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 215038 4482821 ~ 4486925 (-)
LOC122327456 NA other downstream 268463 4428805 ~ 4433500 (-)
LOC122327462 LOC107741386,LOC107698560 other downstream 420195 4272551 ~ 4281768 (-)
G149491 NA other downstream 542982 4156492 ~ 4158981 (-)
LOC122327545 NA other upstream 2015 4707874 ~ 4736860 (-)
LOC122327354 NA other upstream 440067 5145926 ~ 5153856 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other upstream 821371 5527230 ~ 5532809 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other upstream 832697 5538556 ~ 5542080 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 932279 5638138 ~ 5652159 (-)

Expression


Co-expression Network