LOC122327497 (LOC107659626)


Basic Information

Item Value
gene id LOC122327497
gene name LOC107659626
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5279478 ~ 5280923 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222909.1
gagcgcgcgcgcgcggtcTGTCAGAGTTCTGCGGGGCTTCTACGCAAGACTCAAAACTCTATAGCTTAACGCGAAATGAACGTATTAGTAGCCTTAAAATAATGCCTGTCTTTATGAAAACGATCCGCATATTtgatttgttctttttgttgcGTCTGGTTGGTGCGTTTGATGCGCCGCGTGAAGTGCCGGTGATGGTGGGAGATTCTGTCACTCTGGACTCTAACGCTTCAGAAATAGAGCGGGCGAACGAGGTCGAGTGGAGATTTAATGACATTCGCATAGCTAACTTTATCAAGGGCGACGCCACCTATCACGAGAGATTTaaagacagactgaagctggacagAAACGGGTCCCTCACAATCAAAGACACCAGAATAACAGACACCGGAGTCTTTAAATGCACCGTTATCAGTACTAGGGAGAGAGTCGAGAGATTCCGTGTTACTATTTATGCTCCACTATCCATTCCTGTCGTCACCAGTGACACTTCACAgtgttcatcatcatcatcttcatcaacCTGTTCACTGCTGTGTTCGGTGGTGAACGTGAGTCacgtgactctctcctggtacaaaggaaacagtttattgtccagcatcagtgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggagaaaaacacctacagctgtgtgatcaacaaccccatcagaaaccagaccagACATGTCTGCATTACCGACCTCTGTCGTTTGTGTTCAGTTCCCTCTTCAAATGAAGTCCATTATGGAGAAGGGACTGAAGCTGTGATCCGATTGGTCGTCACTGCTCTAGTGGGCGTGGCTGCTGTGGCTGCTTTCATTGTGCTGGTGTATGACATCAGATCCAGAAGAGTTGAAAAGGATGttctaaaacattaataaagccTTTTTACAGACTGTGGTGATGTGTCAGCATAACAAATATAGTTGTAtggttatatttttttatattttcattgatatatatatatatatatatatatatatatatatatatatatatatata

Function

NR:

description
PREDICTED: contactin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222909.1 True 1040 mRNA 0.43 4 5279478 5280923

Neighbor

gene id symbol gene type direction distance location
LOC122327503 LOC107575528,LOC107709688,LOC107741386,LOC107568440 coding downstream 95192 5182941 ~ 5184286 (-)
LOC122327332 NA coding downstream 156227 5114167 ~ 5123251 (-)
LOC122327498 LOC107740712,LOC107755677 coding downstream 168817 5108760 ~ 5110661 (-)
LOC122328166 NA coding downstream 170927 5107353 ~ 5108551 (-)
LOC122327526 NA coding downstream 192966 5084840 ~ 5086512 (-)
LOC122327315 NA coding upstream 46363 5327286 ~ 5341934 (-)
LOC122327308 NA coding upstream 55801 5336724 ~ 5351569 (-)
LOC122327319 NA coding upstream 70292 5351215 ~ 5355113 (-)
LOC122327304 LOC107570597,LOC107658377,LOC107711545 coding upstream 74622 5355545 ~ 5373808 (-)
LOC122327375 LOC107570603,LOC107690762 coding upstream 92529 5373452 ~ 5378887 (-)
G150060 NA non-coding downstream 2736 5273557 ~ 5276742 (-)
G150033 NA non-coding downstream 44018 5232171 ~ 5235460 (-)
G150025 LOC107683790,LOC107563976,LOC107744761 non-coding downstream 52604 5218835 ~ 5226874 (-)
G150017 NA non-coding downstream 75471 5201322 ~ 5204007 (-)
G150008 NA non-coding downstream 98226 5177689 ~ 5181252 (-)
G150071 cacna2d2b,LOC107558272,LOC107653164,LOC107720977,LOC107655410 non-coding upstream 21937 5302860 ~ 5303238 (-)
LOC122327610 NA non-coding upstream 27327 5308250 ~ 5309890 (-)
G150086 LOC107586973,LOC107676140,LOC107698552,LOC107712186,LOC107658401,LOC107676139,LOC107681664 non-coding upstream 137533 5418456 ~ 5470508 (-)
G150093 NA non-coding upstream 170513 5451436 ~ 5454332 (-)
G150092 LOC107658400 non-coding upstream 217018 5497941 ~ 5506152 (-)
LOC122327354 NA other downstream 125622 5145926 ~ 5153856 (-)
LOC122327545 NA other downstream 542618 4707874 ~ 4736860 (-)
LOC122328156 NA other downstream 691056 4585143 ~ 4588422 (-)
LOC122327455 NA other downstream 792553 4482821 ~ 4486925 (-)
LOC122327456 NA other downstream 845978 4428805 ~ 4433500 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other upstream 246307 5527230 ~ 5532809 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other upstream 257633 5538556 ~ 5542080 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other upstream 357215 5638138 ~ 5652159 (-)
nol8 LOC107586918 other upstream 380818 5661741 ~ 5672809 (-)
LOC122327537 NA other upstream 477083 5758006 ~ 5763982 (-)

Expression


Co-expression Network