tspan7b (tspan7b,tspan7,LOC107586946,LOC107756029,LOC107745974,LOC107704418,LOC107593043)


Basic Information

Item Value
gene id tspan7b
gene name tspan7b,tspan7,LOC107586946,LOC107756029,LOC107745974,LOC107704418,LOC107593043
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6190074 ~ 6216614 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222946.1
GCGCGTCGAGAGTGACTGGAGCGCCGCGGCGGAGGCGCAGCGGAGAATCACAGCGGCACAGACCCACTGCGCTCATGGCATCAAGGAGAATGGAGACCAAACCAGTCATAACCTGCCTCAAAACGCTCCTCATCGTCTATTCCTTCGTGTTCTGGATCACGGGGGCGATCCTGCTGGCGGTGGGATTATGGGGGAAGTTCATTCTGGGTCCGTACATCTCTCTGATCGCTGAGAACTCCACCAATGCTCCCTACGTGCTTATCGGGACCGGGACCACCATCATCGTGTTCGGACTGTTCGGATGCTTCGCTACGTGCCGCGGGAGTCCATGGATGCTCAAACTGTACGCCATGTTCCTGTCTCTGGTGTTCCTGGCCGAGCTGGTCGCTGGAATCTCGGGCTTCGTTTTCCGTCATGAGATCAAAGGCACCTTCATGAGGACGTACAATGAGGCCGTTCAAAACTACAACGCCCAGGACGAGAGGAGCATTGCGGTGGACAACGTCCAGAGGAGTTTGCGTTGTTGTGGAGTTCTGAACTACACCAGCTGGTTCTCCAGTGTTTATTTCCCTGTGAATGGAATTCCTCCGAGCTGCTGTGCTAACATCTCTGACTGCAACTCCTCAGACCTGCGAAATGCCACCATAGCAGCCACCAAAGTCCATCAGCAGGGCTGCTATGAGCTGGTGACGACTTTCATTGAGACTAATATGGGCATTATTGCTGGAGTAACGTTTGGAATTGCATTCTCGCAGctgaTCGGGATGCTGCTGGCCTGCTGTCTGTCACGATTCATCACTGCCAATCAGTACGAGATGGTGTAGCGGCGTGTGCgcagGCACCGAAGACATTCGACACCTTGGAAAGGGAAAGCAACCCCAAAATGCTAGCACACTCCATTCTttctcatctcttttttttattctctctcctttaatctttcattctgtctttcctgccttcttcttcttctttttttctcctttccgTCATTCCTTAATCATGCAGTTGTGCCATGACCAAAGCCTCTCCTTTCGAAACGGCAGCGTTAGCGAGGAAAAGGAAATGGTTTTAAGACGCACTCCTGCGCGCTCGTACTTTactctgtacaaaaaaaaacccttgcaTGCGGAAACCATTTCACACACACTAGAACTAAAATCGACAGATTTTCTGTAACGCCGCATCCTAACCGGTCGCATACGAGCCAATCGATATCGCAATCTCTCTCTACGCTGCATATCAAATACGTTCGGGTTAGCTGTGGTTTTTTGAcgctttttctatttttagacAGAAATGACTTAATATTTGAAACATACGTGTGGTTCGTTTAGATATCTATCCCTTTTTGAGACggaaaaactatttaaaatccGCCATTTTGGTTTCTATTTGTCACGTTGCTGTTGGTGGCTCCGCCCACAGTGAGTTCTCATTGGTTCAGGTAGCTGTATGTTACACATCAAccgttctgattggctgttgtgGCTTTGCGCAGTATTTTCACGCGTCCGGTTAGGACGCGGTGTTACGGAACCCCTAAAAAAAGTGACTTCAATGCAGATCTGTTagttaattgctttttttcaagaggaaaactattaaaaaaaatacagatgacgagatgttttgttgttgttgttgctgtcgTAAAATCTTTGGCAAAGGGGTTGATCtcagaaatggctttttttttgtcttcatttttttcGCTCCACATCTCAGCGCCGGGTTGAAAGTTACTCCACAAAATCACGTACAGAGTCAAAAACATCCATTTCGTCGTGAAAGCCAAAAACAAGCACATTTCTGCCACATATAGCTGTACCGAACTCGTATAGACTGAAGTCTTAACATGTGCCCTTATAACTAGTGGCTTTTATGTCGCTGTAAGACGAGCAGATATTTCAGAGTACTATCTAAACACTGTTTAATGGGCGATTTAATGggtcattttgcattttatggaTTGTAGTTACAGTTTTACACCATATCTGCTTTGCGAGacactgtattttatattattttgtggcTTTTTACTGTGAGAATGTAATCAGCTCTGGGAATTTTTCAATCTGCATGCGATGTATGAAGGATAACGAGAATGATATTTCTAAGAATGCTTGGAGAAATATtagatacaaatatatt

Function

symbol description
tspan7 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Orthologous to several human genes including TSPAN6 (tetraspanin 6).
tspan7b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in basal plate midbrain region; nervous system; notochord; and pancreatic bud. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 58. Orthologous to human TSPAN7 (tetraspanin 7).

NR:

description
PREDICTED: tetraspanin-7

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06571 TSPAN7, TM4SF2, MXS1, CD231; tetraspanin-7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222946.1 True 2154 mRNA 0.45 8 6190074 6216614

Neighbor

gene id symbol gene type direction distance location
mid1ip1b mid1ip1b,LOC107756028,LOC107663600,LOC107704421,LOC107593044,LOC107745972,LOC107586944 coding downstream 2347 6185969 ~ 6187727 (-)
LOC122328173 LOC107708183,LOC107753648,LOC107696926,LOC103909885 coding downstream 92251 6096110 ~ 6097823 (-)
atp6ap2 atp6ap2,LOC107663666,LOC107745967 coding downstream 173265 6011435 ~ 6016809 (-)
insrb insrb,LOC107695633,LOC107586934,LOC107704428,LOC107593049 coding downstream 205631 5927516 ~ 5984443 (-)
arhgef18b arhgef18,LOC107695632,LOC107593089,LOC107586933,LOC107755984,LOC107704429 coding downstream 267584 5882826 ~ 5922490 (-)
slc26a11 slc26a11,LOC107663565,LOC107756030,LOC107745975,LOC107593041,LOC107704413,LOC107586945 coding upstream 5248 6221862 ~ 6231174 (-)
gnav1 gnav1,LOC107756032,LOC107745977,LOC107663576,LOC107586948,LOC107704417,LOC107593084,LOC106591843,LOC108259514 coding upstream 21743 6238357 ~ 6271357 (-)
pcyt2 pcyt2,LOC107745976,LOC107756034,LOC107704410,LOC107593040,LOC107586950,LOC103356210,LOC105905797 coding upstream 55839 6272453 ~ 6282129 (-)
dpp4 dpp4,LOC107663703,LOC107586951,LOC107755996,LOC107593097,LOC107745999,LOC107704406 coding upstream 69813 6286427 ~ 6301503 (-)
mettl21a mettl21a,LOC107663696,LOC107704411,LOC108415896 coding upstream 89807 6306421 ~ 6308311 (-)
G150273 NA non-coding downstream 6173 6157497 ~ 6183901 (-)
G150271 NA non-coding downstream 35058 6144878 ~ 6155016 (-)
G150234 tmprss9,LOC107704409,LOC107731339,LOC107593090,LOC107695615,LOC107586983 non-coding downstream 334907 5854785 ~ 5855167 (-)
G150233 NA non-coding downstream 335671 5854201 ~ 5854403 (-)
G150232 NA non-coding downstream 338184 5851285 ~ 5851890 (-)
LOC122327580 NA non-coding upstream 96561 6313175 ~ 6314227 (-)
G150216 krt97,krt96,LOC107663680,LOC107745983,LOC107593038,LOC107739339,LOC107580444 non-coding upstream 127525 6344139 ~ 6345150 (-)
G150322 NA non-coding upstream 161073 6377687 ~ 6381972 (-)
G150325 NA non-coding upstream 167542 6384156 ~ 6386767 (-)
G150453 NA non-coding upstream 381290 6597904 ~ 6599533 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other downstream 197316 5989497 ~ 5992758 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other downstream 328742 5859347 ~ 5861332 (-)
LOC122327537 NA other downstream 426092 5758006 ~ 5763982 (-)
nol8 LOC107586918 other downstream 517265 5661741 ~ 5672809 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other downstream 537915 5638138 ~ 5652159 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other upstream 19638 6236252 ~ 6236865 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other upstream 65842 6282456 ~ 6285580 (-)
G150440 r3hdm1,LOC107739334 other upstream 298951 6515565 ~ 6659352 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other upstream 498180 6714794 ~ 6728690 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other upstream 605589 6822203 ~ 6939000 (-)

Expression


Co-expression Network