shisa10.1 (LOC107695620,LOC107756007)


Basic Information

Item Value
gene id shisa10.1
gene name LOC107695620,LOC107756007
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 5745190 ~ 5751082 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043222948.1
GTTTCATGGGAATGGGAGGGGCGTTTGACGGGTCGTGAGATCCGTATCGTGACGGGACCCGGGCCCGTTATCCAGCCACCGACTCCCTTCGCTGTGCGTCGTTTCGTCGGAAGCGTCCGTCTTTGTATCTCGCGCTCGGGACGGCGGTCTCGCGGTTACCGGTTGAACCTGTAGTTTAAGCCAGGCTCTCCCTTCCCTCGCCCGACACAGGACAGCCGTAGGCGTCTTCTCAGATTACGACATCCGCGAGGAAACGAGCTCCTTGTAGCCCGAGAGCTGAGCTATGGCGCCCGCCGTCCCGCTTCTTCTGCTCCTGTCCGCGGCGTTCATCGCGGAGACTTTCGCCGATGATGACTGCCAAGTCTACATGACCAGCTCCGGGGTGCTTAAACCCTCCATTGACTGCGGGTTTTTACAGTTCTGTTGCGGGACGTGTGATAACAGATACTGCTGCTCCAATCCAATGAAGAGGCTGTCCGAGGATGACCAGGACAGCTGTTTTTTCAGTGATAATAAGTCCGTCATTATCGGCATGAGCATAGCCGGGATTGTGGTCTTCATCATCATGTTCATCGTCTGCTGCGTCTGCCCCTGCTGCTGCCTCTACAAAATGTGCCGGACGCCCAGACCTGCTATGGCAACGACGACCACTACGGTGGTAAGCACGCAGTATCCTCAGCAGCCCGTTGTTCAGGGAGGTCAGTACCCGCCGTACCAGCCCATGCCCGCCCAGGCCGGATACGGCGGCACACCAGCCTACGGAGGACAGCCCGCGCCGACCGGACCGTACCAAGGCCAGCCGTATTCGTCGGTACCACCACCCCCATATCAGGAGGCCGGAGGCCCAGGATATCCTTTTCCTTACAGCAAAGCAGCATATGACGGTGGGCAGGCCTCGTACCCCTTACAACCCCCAGTTCAGCCCGGCTTCGCACCCCCACCGACAGACTACAGCGCGACTCAACCGGCTTACAACCCCGCTTACGTGGAGCAACCAAAGACCGGCTACTAAACCGCGACCTGAATTATCATCTTCACCCTGCAGGAGCGCAATGTTCATCTACTGCGGACAGCATCTTCCAATCGAGTCGGGAACTATACCTTCTGCATTCGCTATCTTTGTGTGTCAGCCTCGTTTTCTCGACTTACTTTTATatacgtacatttttattcactcCAGCCGCTGCGCATGACTCTAAGCCATATAACGTTTATGTTTCGTTCGTTTTCGTCCACTGAGCAAAAGGGAAACGTTTAACCGGCCTCCGAACGGGCAGCACGCCTCGTCTCGAAATGCCGCTTCGACGCCTTAAATACCGCCAGCTTTATTTTATCCTGGGAATTCGCACAAACCGTCGACACTTTATGGTGCATTTAACAACGCCGGCACATGATTTGTTCACGATTCTCGTAGCATTCGGGGTTTTTGAATTTGTGAATGTTTCATCAAAGCGTTCTCGCGCTCGGAGATCCGGAATATGCCTTATTTAATGCAGCTTATGCCTTAAACGCAACGTTCCCATGGTTTGCGTTTGGATTGTTTTATGGAGTTCGGGTTTCGGATGTTGCAGAAACGCCATGTTTATACGCGTTTCTCTTGCGAACTCTTTGCTCGAGGGTCTGATAAGCGTACCGCTGCGTTTGAAAGAACGGCAATAATTCGGTCCGAAATGACTTGAAGTGATGCGAAACtctcaattttaaaaagtgaacgCCGTTCAAGGGCAGGAAGAGGGCGAATTGTGAGCCGCTTGGCTGCGACGTGCTCTCATTGAAGTTGGGTCATATGTTTTCAATCCCTCTGGGTACAATCTTCCGCAGATTCTTGTCACGTTTGATATGATTCGGGTTTATTAACTGAGGTGTATGTTAAAAATGATCAGCgttctgttaaaatgtttacGCATTCGGGCGTCTCCTTGTGTGCAgccacaaataaaaagaaattgtgcTGGAATCACTGTTAAA
>XM_043222949.1
TTTTCGTTTCATGGGAATGGGAGGGGCGTTTGACGGGTCGTGAGATCCGTATCGTGACGGGACCCGGGCCCGTTATCCAGCCACCGACTCCCTTCGCTGTGCGTCGTTTCGTCGGAAGCGTCCGTCTTTGTATCTCGCGCTCGGGACGGCGGTCTCGCGGTTACCGGTTGAACCTGTAGTTTAAGCCAGGCTCTCCCTTCCCTCGCCCGACACAGGACAGCCGTAGGCGTCTTCTCAGATTACGACATCCGCGAGGAAACGAGCTCCTTGTAGCCCGAGAGCTGAGCTATGGCGCCCGCCGTCCCGCTTCTTCTGCTCCTGTCCGCGGCGTTCATCGCGGAGACTTTCGCCGATGATGACTGCCAAGTCTACATGACCAGCTCCGGGGTGCTTAAACCCTCCATTGACTGCGGGTTTTTACAGTTCTGTTGCGGGACGTGTGATAACAGATACTGCTGCTCCAATCCAATGAAGAGGCTGTCCGAGGATGACCAGGACAGCTGTTTTTTTGATAATAAGTCCGTCATTATCGGCATGAGCATAGCCGGGATTGTGGTCTTCATCATCATGTTCATCGTCTGCTGCGTCTGCCCCTGCTGCTGCCTCTACAAAATGTGCCGGACGCCCAGACCTGCTATGGCAACGACGACCACTACGGTGGTAAGCACGCAGTATCCTCAGCAGCCCGTTGTTCAGGGAGGTCAGTACCCGCCGTACCAGCCCATGCCCGCCCAGGCCGGATACGGCGGCACACCAGCCTACGGAGGACAGCCCGCGCCGACCGGACCGTACCAAGGCCAGCCGTATTCGTCGGTACCACCACCCCCATATCAGGAGGCCGGAGGCCCAGGATATCCTTTTCCTTACAGCAAAGCAGCATATGACGGTGGGCAGGCCTCGTACCCCTTACAACCCCCAGTTCAGCCCGGCTTCGCACCCCCACCGACAGACTACAGCGCGACTCAACCGGCTTACAACCCCGCTTACGTGGAGCAACCAAAGACCGGCTACTAAACCGCGACCTGAATTATCATCTTCACCCTGCAGGAGCGCAATGTTCATCTACTGCGGACAGCATCTTCCAATCGAGTCGGGAACTATACCTTCTGCATTCGCTATCTTTGTGTGTCAGCCTCGTTTTCTCGACTTACTTTTATatacgtacatttttattcactcCAGCCGCTGCGCATGACTCTAAGCCATATAACGTTTATGTTTCGTTCGTTTTCGTCCACTGAGCAAAAGGGAAACGTTTAACCGGCCTCCGAACGGGCAGCACGCCTCGTCTCGAAATGCCGCTTCGACGCCTTAAATACCGCCAGCTTTATTTTATCCTGGGAATTCGCACAAACCGTCGACACTTTATGGTGCATTTAACAACGCCGGCACATGATTTGTTCACGATTCTCGTAGCATTCGGGGTTTTTGAATTTGTGAATGTTTCATCAAAGCGTTCTCGCGCTCGGAGATCCGGAATATGCCTTATTTAATGCAGCTTATGCCTTAAACGCAACGTTCCCATGGTTTGCGTTTGGATTGTTTTATGGAGTTCGGGTTTCGGATGTTGCAGAAACGCCATGTTTATACGCGTTTCTCTTGCGAACTCTTTGCTCGAGGGTCTGATAAGCGTACCGCTGCGTTTGAAAGAACGGCAATAATTCGGTCCGAAATGACTTGAAGTGATGCGAAACtctcaattttaaaaagtgaacgCCGTTCAAGGGCAGGAAGAGGGCGAATTGTGAGCCGCTTGGCTGCGACGTGCTCTCATTGAAGTTGGGTCATATGTTTTCAATCCCTCTGGGTACAATCTTCCGCAGATTCTTGTCACGTTTGATATGATTCGGGTTTATTAACTGAGGTGTATGTTAAAAATGATCAGCgttctgttaaaatgtttacGCATTCGGGCGTCTCCTTGTGTGCAgccacaaataaaaagaaattgtgcTGGAATCACTGTTAAA

Function

NR:

description
PREDICTED: protein shisa-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043222948.1 False 1968 mRNA 0.52 5 5745190 5751077
XM_043222949.1 True 1970 mRNA 0.52 5 5745190 5751082

Neighbor

gene id symbol gene type direction distance location
si:dkey-42i9.4 si:dkey-42i9.4,LOC107586924,LOC107756006,LOC107704447,LOC107593103,LOC108431510 coding downstream 11648 5732383 ~ 5733542 (-)
ippk ippk,LOC107755999,LOC107658385 coding downstream 13785 5720053 ~ 5731405 (-)
ecm2 ecm2,LOC107586919,LOC107658384 coding downstream 31458 5703301 ~ 5713732 (-)
aspn aspn,LOC107756000,LOC107658386 coding downstream 43723 5695649 ~ 5701467 (-)
omd omd coding downstream 51426 5689336 ~ 5693764 (-)
LOC122327508 NA coding upstream 3313 5754395 ~ 5757178 (-)
bap1 bap1,LOC107704441,LOC107695622,LOC107755981 coding upstream 12956 5764038 ~ 5772073 (-)
LOC122327539 NA coding upstream 38733 5789815 ~ 5793054 (-)
sass6 sass6,LOC107756018,LOC107695611,LOC107731314 coding upstream 88666 5839748 ~ 5846930 (-)
arhgef18b arhgef18,LOC107695632,LOC107593089,LOC107586933,LOC107755984,LOC107704429 coding upstream 131744 5882826 ~ 5922490 (-)
G150126 wu:fb55g09,LOC107587000,LOC107755988,LOC107704455,LOC107720989,LOC107658378,LOC107593068 non-coding downstream 89814 5654051 ~ 5655376 (-)
G150184 NA non-coding downstream 140772 5604157 ~ 5604418 (-)
G150125 LOC107586915,LOC107745408,LOC107658396,LOC107721006,LOC107593072 non-coding downstream 162149 5579470 ~ 5583041 (-)
G150161 tbc1d20,LOC107658381,LOC107586998,LOC107573569,LOC107653176,LOC107720987 non-coding downstream 199422 5545268 ~ 5545768 (-)
G150121 NA non-coding downstream 232223 5508570 ~ 5512967 (-)
G150152 NA non-coding upstream 71847 5822929 ~ 5823913 (-)
G150232 NA non-coding upstream 100203 5851285 ~ 5851890 (-)
G150233 NA non-coding upstream 103119 5854201 ~ 5854403 (-)
G150234 tmprss9,LOC107704409,LOC107731339,LOC107593090,LOC107695615,LOC107586983 non-coding upstream 103703 5854785 ~ 5855167 (-)
G150271 NA non-coding upstream 393796 6144878 ~ 6155016 (-)
nol8 LOC107586918 other downstream 72381 5661741 ~ 5672809 (-)
nisch nisch,LOC107586977,LOC107593071,LOC107653160,LOC107755997 other downstream 93031 5638138 ~ 5652159 (-)
bloc1s1 bloc1s1,LOC107573571,LOC107653169,LOC107745401,LOC107658402,LOC107720994,LOC107586997 other downstream 203110 5538556 ~ 5542080 (-)
gls2b gls2b,LOC107658399,LOC107745412,LOC107653170,LOC108431573,LOC106566158,LOC105007068 other downstream 212381 5527230 ~ 5532809 (-)
LOC122327354 NA other downstream 591334 5145926 ~ 5153856 (-)
LOC122327537 NA other upstream 6924 5758006 ~ 5763982 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other upstream 108265 5859347 ~ 5861332 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other upstream 238415 5989497 ~ 5992758 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other upstream 485170 6236252 ~ 6236865 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other upstream 531374 6282456 ~ 6285580 (-)

Expression


Co-expression Network