bsg (bsg,LOC107728565,LOC107719600,LOC107569932)


Basic Information

Item Value
gene id bsg
gene name bsg,LOC107728565,LOC107719600,LOC107569932
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10239077 ~ 10249861 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223040.1
CTCCAGCCTGTATACGTGCGCGTTCTCGGGTGAGCTGGGAACAAGTAGAGGACGACAAGGCTTCGCCGAGGGCTTTGCTCCAAACCGTCTCTGCCTCTGAAAACAGGCCCGATTTTTACACTGTCGCGCAGTTAAAAGCATCTAACCATGAGAAGGAAGCTGTTAGGCGTGATTCTCGCCGTTTGTATCGGTTGGTTCCGAGCCGAGGCTCTGACAGCGGGCTTCATAAAATCGCCCTTGTCTCAGATGAAACTCATAGAAGACAATGCCGAGTTGGATTGCGAGGTCATAGGGAACCCCATCCCTGAAGTTCAGTGGTGGTTCATTGAGGGTGAAGAGCCGATTGAAACGGTCACTCAGCTGTTCGACGGCGCGAGAGAAGATCGCGTGCACATCAACGCCACCTATATCAACCACGCTACCAGCACGCTCGTCCTCACCAACCTAACACTCAACGACACGGGTGTTTATGAGTGCCGTGCCTCAAATGACCCCGACCGCAATGACCTCAGGACCCCCCCCAAAGTCAAGTGGATTCGCTCACAAGCGAACGTTATAGTGTTTGAACATGCAGCCATCACAACCAGACCAGAGATGGTGAGCGATCAGAACCAGACTGCTGCAACACTCACCTGCAACCTCACCAACACTGATTTTACCATCAAGGGCTACTATTGGACCCATAATGGCAAGATCATTGACAAATCAAAGTCAAGCGTTGGAAAAGCTTACATTGAACACGAAATTGCAAAGATTGATTACCACTCTTCTGGGCTATATTCCTGCGTCTTCCAAACTGAACCTGAGGTTAATGCCACCATCGAAGTTAAAGTCACCCCACATGTTGTGGCCTACAAACACTCTGAAAATGCTAACGAGAAAGACAAGGCTGTCCTAATATGTGTGAGCCACGGATACCCCCTGCCAACTGACTGGGAATGGTATAAGCTGAGTGAAACTGATGCAgctaaaaagATTCCCATTGTCAATGGCACTGATGACAAGTATGAGATCAAGAACACCCCCAACAAGACCACGCTGTACGTGAAAAATCTGGAAATCGACAAGGACATGGGCATATACCTGTGCATGGGCACCAATGACATAGGTTCAGGCGACGATAAAATTCAGCTGCGTGTGCGTAGCCAGCTGGCCGCCCTCTGGCCTTTCCTCGGCATTGTCGCCGAGGTCATTATCCTCATCACTGTCATCTTCATCTACGAGAAGAGGAGAAAGCCAGACGAGATCAACGACGATGACGACTCAGGAGCTGCACCACTGAAAAGCAACGCTGCTACAAAccacaaagacaaaaatgtcCGGCAAAGGAACTCTAACTAAGAAAGGAGAAAAggtgtCCTGATGACTACTGTTGAAGAGATGGAGAACCGAGCAGCACACTATAGTGCACCCTGCGAGTTGTTAACCTTCTGCTTGAGTGTAAATGTCTTGAGATAATAATTGGTCTCCTTTTATTCCTATCCATATTGTGCTGCCAGCtgacgtttttaaaaatgtttttttttttttgggagggggAAGGGGGAAACTGCATGATTGTATTCTTGCTGTagaagtgtgtgtatttagtgAATCTCTTAATGTggaaaggattttttttttttttttcttggtttctTTAACCGTTCCGAAAACATTTGCAACTTTCCGAAACATTTACAGACTGTAACTGAATCACTGTTCAGCCGCATGAGAATTTAACCATGTTCGATGTATACAAAATAGATCGCTGAATCAAGTTTCTATCACAGCAgtcattttcctgtttttttttttttttttttttttaaagccttaaTGTTTAGCCACTTTATTGTACTTGCtagttttaattattgaaataattaacaaCTTTTATGTGCACTACTCATGCACATTAAAGTACACTATTCCATGTGGATGGTCAAATGCCAGGCTAacaattttctgtttaataatgtaaaacaagCTTATTTTTAAAGTTGATAATATAGTTTCTAACGTTGATTTTTAGGACTCCTCCGCCTAACCCTTAAGGACCAAGCGCTAGTACAGTGTGTTCGCATAATCCGTTATAACCCGTTTCCTAAATTCTAACATGGAGGACAATATGGTTATAAATGTTAGGTAAAGTCAGTGACAAAGGGGTTTTCGTGAAGGTTTCTGCTTTAAATGATACTCTCCTATAGACCGTCATACTTGCATTGTAATACATTGTGAAGTATAGTGTCTGGATGTGTGCCATTTTTCCGAGTTAAAAGATGTGTAAACTTTAAGACCTTGCTAGaagtgtttaaattattttgcctTAGCTTAATAGGAAATCTAATACACCATCGGCTGTACTGACTTGCacaatctaaataaaattatttgattttaa
>XM_043223041.1
CCTCCAGCCTGTATACGTGCGCGTTCTCGGGTGAGCTGGGAACAAGTAGAGGACGACAAGGCTTCGCCGAGGGCTTTGCTCCAAACCGTCTCTGCCTCTGAAAACAGGCCCGATTTTTACACTGTCGCGCAGTTAAAAGCATCTAACCATGAGAAGGAAGCTGTTAGGCGTGATTCTCGCCGTTTGTATCGGTTGGTTCCGAGCCGAGGCTCTGACAGCGGGCTTCATAAAATCGCCCTTGTCTCAGATGAAACTCATAGAAGACAATGCCGAGTTGGATTGCGAGGTCATAGGGAACCCCATCCCTGAAGTTCAGTGGTGGTTCATTGAGGGTGAAGAGCCGATTGAAACGGTCACTCAGCTGTTCGACGGCGCGAGAGAAGATCGCGTGCACATCAACGCCACCTATATCAACCACGCTACCAGCACGCTCGTCCTCACCAACCTAACACTCAACGACACGGGTGTTTATGAGTGCCGTGCCTCAAATGACCCCGACCGCAATGACCTCAGGACCCCCCCCAAAGTCAAGTGGATTCGCTCACAAGCGAACGTTATAGTGTTTGAACATGCAGCCATCACAACCAGACCAGAGATGGTGAGCGATCAGAACCAGACTGCTGCAACACTCACCTGCAACCTCACCAACACTGATTTTACCATCAAGGGCTACTATTGGACCCATAATGGCAAGATCATTGACAAATCAAAGTCAAGCGTTGGAAAAGCTTACATTGAACACGAAATTGCAAAGATTGATTACCACTCTTCTGGGCTATATTCCTGCGTCTTCCAAACTGAACCTGAGGTTAATGCCACCATCGAAGTTAAAGTCACCCCACATGTTGTGGCCTACAAACACTCTGAAAATGCTAACGAGAAAGACAAGGCTGTCCTAATATGTGTGAGCCACGGATACCCCCTGCCAACTGACTGGGAATGGTATAAGCTGAGTGAAACTGATGCAgctaaaaagATTCCCATTGTCAATGGCACTGATGACAAGTATGAGATCAAGAACACCCCCAACAAGACCACGCTGTACGTGAAAAATCTGGAAATCGACAAGGACATGGGCATATACCTGTGCATGGGCACCAATGACATAGGTTCAGGCGACGATAAAATTCAGCTGCGTGTGCGTAGCCAGCTGGCCGCCCTCTGGCCTTTCCTCGGCATTGTCGCCGAGGTCATTATCCTCATCACTGTCATCTTCATCTACGAGAAGAGGAGAAAGCCAGACGAGATCAACGACGGAGCTGCACCACTGAAAAGCAACGCTGCTACAAAccacaaagacaaaaatgtcCGGCAAAGGAACTCTAACTAAGAAAGGAGAAAAggtgtCCTGATGACTACTGTTGAAGAGATGGAGAACCGAGCAGCACACTATAGTGCACCCTGCGAGTTGTTAACCTTCTGCTTGAGTGTAAATGTCTTGAGATAATAATTGGTCTCCTTTTATTCCTATCCATATTGTGCTGCCAGCtgacgtttttaaaaatgtttttttttttttgggagggggAAGGGGGAAACTGCATGATTGTATTCTTGCTGTagaagtgtgtgtatttagtgAATCTCTTAATGTggaaaggattttttttttttttttcttggtttctTTAACCGTTCCGAAAACATTTGCAACTTTCCGAAACATTTACAGACTGTAACTGAATCACTGTTCAGCCGCATGAGAATTTAACCATGTTCGATGTATACAAAATAGATCGCTGAATCAAGTTTCTATCACAGCAgtcattttcctgtttttttttttttttttttttttaaagccttaaTGTTTAGCCACTTTATTGTACTTGCtagttttaattattgaaataattaacaaCTTTTATGTGCACTACTCATGCACATTAAAGTACACTATTCCATGTGGATGGTCAAATGCCAGGCTAacaattttctgtttaataatgtaaaacaagCTTATTTTTAAAGTTGATAATATAGTTTCTAACGTTGATTTTTAGGACTCCTCCGCCTAACCCTTAAGGACCAAGCGCTAGTACAGTGTGTTCGCATAATCCGTTATAACCCGTTTCCTAAATTCTAACATGGAGGACAATATGGTTATAAATGTTAGGTAAAGTCAGTGACAAAGGGGTTTTCGTGAAGGTTTCTGCTTTAAATGATACTCTCCTATAGACCGTCATACTTGCATTGTAATACATTGTGAAGTATAGTGTCTGGATGTGTGCCATTTTTCCGAGTTAAAAGATGTGTAAACTTTAAGACCTTGCTAGaagtgtttaaattattttgcctTAGCTTAATAGGAAATCTAATACACCATCGGCTGTACTGACTTGCacaatctaaataaaattatttgattttaa
>XM_043223042.1
CCTGTATACGTGCGCGTTCTCGGGTGAGCTGGGAACAAGTAGAGGACGACAAGGCTTCGCCGAGGGCTTTGCTCCAAACCGTCTCTGCCTCTGAAAACAGGCCCGATTTTTACACTGTCGCGCAGTTAAAAGCATCTAACCATGAGAAGGAAGCTGTTAGGCGTGATTCTCGCCGTTTGTATCGGTTGGTTCCGAGCCGAGGCTCTGACAGATGCAGCCATCACAACCAGACCAGAGATGGTGAGCGATCAGAACCAGACTGCTGCAACACTCACCTGCAACCTCACCAACACTGATTTTACCATCAAGGGCTACTATTGGACCCATAATGGCAAGATCATTGACAAATCAAAGTCAAGCGTTGGAAAAGCTTACATTGAACACGAAATTGCAAAGATTGATTACCACTCTTCTGGGCTATATTCCTGCGTCTTCCAAACTGAACCTGAGGTTAATGCCACCATCGAAGTTAAAGTCACCCCACATGTTGTGGCCTACAAACACTCTGAAAATGCTAACGAGAAAGACAAGGCTGTCCTAATATGTGTGAGCCACGGATACCCCCTGCCAACTGACTGGGAATGGTATAAGCTGAGTGAAACTGATGCAgctaaaaagATTCCCATTGTCAATGGCACTGATGACAAGTATGAGATCAAGAACACCCCCAACAAGACCACGCTGTACGTGAAAAATCTGGAAATCGACAAGGACATGGGCATATACCTGTGCATGGGCACCAATGACATAGGTTCAGGCGACGATAAAATTCAGCTGCGTGTGCGTAGCCAGCTGGCCGCCCTCTGGCCTTTCCTCGGCATTGTCGCCGAGGTCATTATCCTCATCACTGTCATCTTCATCTACGAGAAGAGGAGAAAGCCAGACGAGATCAACGACGATGACGACTCAGGAGCTGCACCACTGAAAAGCAACGCTGCTACAAAccacaaagacaaaaatgtcCGGCAAAGGAACTCTAACTAAGAAAGGAGAAAAggtgtCCTGATGACTACTGTTGAAGAGATGGAGAACCGAGCAGCACACTATAGTGCACCCTGCGAGTTGTTAACCTTCTGCTTGAGTGTAAATGTCTTGAGATAATAATTGGTCTCCTTTTATTCCTATCCATATTGTGCTGCCAGCtgacgtttttaaaaatgtttttttttttttgggagggggAAGGGGGAAACTGCATGATTGTATTCTTGCTGTagaagtgtgtgtatttagtgAATCTCTTAATGTggaaaggattttttttttttttttcttggtttctTTAACCGTTCCGAAAACATTTGCAACTTTCCGAAACATTTACAGACTGTAACTGAATCACTGTTCAGCCGCATGAGAATTTAACCATGTTCGATGTATACAAAATAGATCGCTGAATCAAGTTTCTATCACAGCAgtcattttcctgtttttttttttttttttttttttaaagccttaaTGTTTAGCCACTTTATTGTACTTGCtagttttaattattgaaataattaacaaCTTTTATGTGCACTACTCATGCACATTAAAGTACACTATTCCATGTGGATGGTCAAATGCCAGGCTAacaattttctgtttaataatgtaaaacaagCTTATTTTTAAAGTTGATAATATAGTTTCTAACGTTGATTTTTAGGACTCCTCCGCCTAACCCTTAAGGACCAAGCGCTAGTACAGTGTGTTCGCATAATCCGTTATAACCCGTTTCCTAAATTCTAACATGGAGGACAATATGGTTATAAATGTTAGGTAAAGTCAGTGACAAAGGGGTTTTCGTGAAGGTTTCTGCTTTAAATGATACTCTCCTATAGACCGTCATACTTGCATTGTAATACATTGTGAAGTATAGTGTCTGGATGTGTGCCATTTTTCCGAGTTAAAAGATGTGTAAACTTTAAGACCTTGCTAGaagtgtttaaattattttgcctTAGCTTAATAGGAAATCTAATACACCATCGGCTGTACTGACTTGCacaatctaaataaaattatttgattttaa

Function

symbol description
bsg Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion. Predicted to be located in basolateral plasma membrane; endoplasmic reticulum membrane; and lateral plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in intestine and liver. Orthologous to human BSG (basigin (Ok blood group)).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06535 BSG, CD147; basigin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223040.1 True 2383 mRNA 0.43 9 10239078 10249861
XM_043223041.1 False 2372 mRNA 0.43 9 10239077 10249861
XM_043223042.1 False 2026 mRNA 0.41 8 10239084 10249861

Neighbor

gene id symbol gene type direction distance location
fstl3 fstl3,LOC107687713,LOC107728592,LOC107569933,LOC107655223,LOC107554822,LOC107719601 coding upstream 7768 10223590 ~ 10231309 (+)
cbarpb LOC107655224,LOC107554820,LOC107719602,LOC107728578,LOC107687734 coding upstream 30292 10189214 ~ 10208785 (+)
si:ch211-212d10.1 NA coding upstream 166225 10070816 ~ 10072852 (+)
cilp2 cilp2,LOC107728576,LOC107687716,LOC107655229,LOC107719612,LOC107599460 coding upstream 194865 10030870 ~ 10044212 (+)
yjefn3 yjefn3,LOC107687717,LOC107655232,LOC107719609,LOC108429551,LOC107554805,LOC103041169,LOC108271278 coding upstream 210603 9996479 ~ 10028474 (+)
hcn2b hcn2b,LOC107569045,LOC107569931,LOC107719599,LOC107655221,LOC108429559 coding downstream 1006 10250867 ~ 10279453 (+)
fgf22 fgf22,LOC107687712,LOC107569930,LOC107719646,LOC107655219,LOC107728567,LOC107569044 coding downstream 75714 10325575 ~ 10347666 (+)
LOC122328212 LOC107728582,LOC107687738 coding downstream 103985 10353846 ~ 10355418 (+)
LOC122328211 NA coding downstream 110265 10360126 ~ 10362209 (+)
LOC122328214 NA coding downstream 119234 10369095 ~ 10370513 (+)
G151382 NA non-coding upstream 49905 10188578 ~ 10189172 (+)
G151373 NA non-coding upstream 51494 10185635 ~ 10187583 (+)
G151345 LOC107655225,LOC107554818,LOC107728568,LOC107687715,LOC107599463 non-coding upstream 76631 10151480 ~ 10162446 (+)
LOC122327864 NA non-coding upstream 98923 10137300 ~ 10140154 (+)
G151358 NA non-coding upstream 156457 10081782 ~ 10082620 (+)
G151487 NA non-coding downstream 97968 10347829 ~ 10348886 (+)
G151516 NA non-coding downstream 138689 10388550 ~ 10421036 (+)
G151592 NA non-coding downstream 416195 10666056 ~ 10669212 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding downstream 451761 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding downstream 459183 10709044 ~ 10709110 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 245636 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 275443 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 328284 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 345570 9888163 ~ 9893507 (+)
G151232 NA other upstream 658926 9577679 ~ 9580151 (+)
G151620 NA other downstream 556191 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 624567 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 668228 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 685174 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 1068246 11318107 ~ 11328230 (+)

Expression


Co-expression Network