cnot9 (rqcd1,cnot9,LOC107586962,LOC107687874,LOC107600965,LOC107653560)


Basic Information

Item Value
gene id cnot9
gene name rqcd1,cnot9,LOC107586962,LOC107687874,LOC107600965,LOC107653560
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6791674 ~ 6797085 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223046.1
TTCACAGCGTGAGCTTGGGGGCAGCAATGAACACTAGACCCTTTATTACACGCTATAACCTTACgccgaagaagaagaagagcctCCCGGAAGAGAACCGTAGAAGAAGAAGTAGCAGCAGCGGAAGGCGGTTGTTTTCTCTTAGCTTGATTGCTCATGTAAACCgatttctttctgtttgttttaacaaCTACGACTCACTTTTACTCTGGAGATCACAATAAAGTGACAGGGAGGATGTTGGCTACAGGAACGACTGTAACCACGGCGGGTCTGACGCAGGTGGATCGTGAGAAGATCTATCAGTGGATCAACGAGCTCTCCAGCCCTGAGACGCGCGAGAACGCCCTGCTGGAGCTCAGCAAGAAGAGGGAGTCCGTGACGGACCTGGCCCCCATGCTCTGGCACTCCTGCGGAACTATAGCGGCTCTCCTGCAGGAGATTGTGAACATCTACCCATCCATAAACCCCCCGACGCTGACAGCACATCAGTCTAATCGAGTGTGCAACGCTTTAGCACTGCTGCAGTGTGTGGCCTCCCACGTAGAGACACGCTCTGCTTTCCTGGCAGCTCACATCCCTCTGTTTCTGTATCCCTTCCTGCACACGGTCAGTAAAACCAGGCCCTTCGAATACCTGCGTCTCACGAGTCTGGGGGTCATCGGCGCACTAGTGAAAACGGATGAGCAGGAGGTGATCAACTTCCTGTTGACCACAGAAATCATTCCTCTCTGCCTGCGCATCATGGAGTCCGGCAGCGAGCTTTCCAAAACGGTGGCCACTTTTATACTGCAGAAGATTCTCTTAGACGACACGGGGCTTGCGTATATCTGCCAGACCTACGAACGCTTTTCACACGTTGCCATGATACTGGGGAAGATGGTTCTTCAGTTGTCGAAGGAGCCCTCGGCTCGTTTGCTGAAGCATGTTGTCCGCTGTTACCTACGACTTTCTGACAACTCCAGGGCGAGAGAAGCTCTTCGTCAGTGCCTGCCCGACCAGCTGAAGGACACTACGTTCGCTCAAGTGCTGAAGGACGACTCCACCACCAAACGCTGGCTTGCTCAGCTCGTCAAAAACCTGCAGGAGGGGCAGGTCACGGACCCCCGGGGCATCCCCTTACCGCctcagtaacacacacacacactctcatccCAAACCCTCCGGGACGGCCAGCAACACATCAGACTGTTTCATATACAAGGgcacttaatatttttttgccaaGAAGCTCAGAAACGGTGCTCAGCATTCACGGTTTGTTTCGAGATATTAAAAATTGACTTTGGACTCTGCTGGACTGAGGAAGAGTCAGTCTCACCCATTattaggagttttttttttttttttttttttttcgctttttttGACGGAATCGAGAGGAATTGAAAGACTGTTTTGTctgtatttcataaaaaaaaaaaaaaaaagtgtaattttgaAAGCTGTTAAATAAACAGTGTCATGCCATTGGAAATGTCAAGTGAAA

Function

symbol description
cnot9 Predicted to enable nuclear receptor coactivator activity. Predicted to be involved in negative regulation of intracellular estrogen receptor signaling pathway and negative regulation of translation. Predicted to act upstream of or within gene silencing by RNA; mRNA catabolic process; and regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Orthologous to human CNOT9 (CCR4-NOT transcription complex subunit 9).

NR:

description
PREDICTED: cell differentiation protein RCD1 homolog

GO:

id name namespace
GO:0033147 negative regulation of intracellular estrogen receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:2000327 obsolete positive regulation of nuclear receptor transcription coactivator activity biological_process
GO:0000932 P-body cellular_component
GO:0005634 nucleus cellular_component
GO:0030014 CCR4-NOT complex cellular_component

KEGG:

id description
K12606 RCD1, CNOT9, CAF40; CCR4-NOT transcription complex subunit 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223046.1 True 1489 mRNA 0.49 8 6791674 6797085

Neighbor

gene id symbol gene type direction distance location
plcd4a plcd4a,LOC107739328,LOC107600964,LOC107687884,LOC107586990,LOC103363317 coding downstream 2145 6775322 ~ 6789529 (-)
slx9 LOC107687875,LOC107754253,LOC107739358,LOC107586963 coding downstream 16977 6758285 ~ 6774697 (-)
adarb1a LOC107687876,LOC107586961,LOC107600973,LOC107754241,LOC107653596,LOC107739329 coding downstream 35882 6729782 ~ 6755792 (-)
zranb3 zranb3,LOC107687885,LOC107663643,LOC107710929 coding downstream 213247 6524786 ~ 6578427 (-)
tmem163b tmem163b,tmem163,LOC107739337,LOC107586956,LOC107663488,LOC107745987,LOC107653588,LOC105909211,LOC103367750,LOC107381042 coding downstream 290366 6473781 ~ 6501308 (-)
LOC122328175 LOC107751494,LOC107739353 coding upstream 77374 6874459 ~ 6880468 (-)
LOC122327117 LOC107570603,LOC107690762 coding upstream 129879 6926964 ~ 6929270 (-)
LOC122328177 NA coding upstream 132065 6929150 ~ 6934573 (-)
LOC122327116 nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250 coding upstream 165429 6962514 ~ 6971960 (-)
LOC122327115 LOC107687869,LOC107739325,LOC107653600,LOC107600976,LOC107754251 coding upstream 189480 6986565 ~ 6994634 (-)
G150456 NA non-coding downstream 182046 6607789 ~ 6609628 (-)
G150442 NA non-coding downstream 185120 6603055 ~ 6606554 (-)
G150453 NA non-coding downstream 192141 6597904 ~ 6599533 (-)
G150325 NA non-coding downstream 404907 6384156 ~ 6386767 (-)
G150322 NA non-coding downstream 409702 6377687 ~ 6381972 (-)
G150472 NA non-coding upstream 2078 6799163 ~ 6805440 (-)
G150488 NA non-coding upstream 89464 6886549 ~ 6887136 (-)
G150490 LOC107739322,LOC107653601,LOC107586968,LOC107687868,LOC107751479 non-coding upstream 102158 6899243 ~ 6902815 (-)
G150494 NA non-coding upstream 142533 6939618 ~ 6940626 (-)
G150503 NA non-coding upstream 205875 7002960 ~ 7004118 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other downstream 62984 6714794 ~ 6728690 (-)
G150440 r3hdm1,LOC107739334 other downstream 132322 6515565 ~ 6659352 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other downstream 506094 6282456 ~ 6285580 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other downstream 554809 6236252 ~ 6236865 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other downstream 798916 5989497 ~ 5992758 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other upstream 25118 6822203 ~ 6939000 (-)
nab1a nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950 other upstream 49805 6846890 ~ 6889657 (-)
mfsd6a mfsd6a,LOC107687869,LOC107739325,LOC107600976,LOC107653600,LOC107754251,LOC105022531 other upstream 68138 6865223 ~ 6873200 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other upstream 108915 6906000 ~ 6913558 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other upstream 223669 7020754 ~ 7055562 (-)

Expression


Co-expression Network