LOC122327621 (si:ch211-197g15.7,LOC107669809,LOC107728557,LOC107592684,LOC107655250,LOC107592683,LOC107669808)


Basic Information

Item Value
gene id LOC122327621
gene name si:ch211-197g15.7,LOC107669809,LOC107728557,LOC107592684,LOC107655250,LOC107592683,LOC107669808
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9370790 ~ 9374225 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223053.1
ttgagATGTTTTATAACAGTAGGACCCACCCACCAAAACCTCAAAGCTGCTCTGTTAAACTTGAACTGACTTCCTTGTTTCGAAGCGTCTCGTTCTACTAAACATGCAAAAAGCCAAAGTTAAAAAGGTCAGCCCAGCTACCCTCACTTCCAATTTAGCAGAAGTGCAAAGAGAACAGCTTTGTGCTTCGCTAGGGGATGCGGATCTGACCCTTCTCTACAAAGCTTCAGTTCATGGATATCAAGCTTCTGCCTTCCACCAGAGATGTGACCGTCAGGGTCCTACTTTACTTGTAGCCTACAACCGATCAGGCTACGTCTTTGGTGGATACACTAGTGTGGAGTATGCACGAAGTGGCCAGGAAATTACAGATGAGGAAGCCTTCCTTTTCAGTCTTACAAGTGGAACCTCTATCTACACCAAGGTGAACAGTGGATATAAGGCACGTTATGATGATGCTAAAGGGCCCAGCTTTGGCCAACAGCTGTACTTTTGCTACAACAACCAACCAGTTTTGTATCATCAAGGAGGGAATGCATTCAACATAAATACCTCATCAATGTATGGCAATGACACTCAGCTGAGTGAATGTGAGGTGTATAAAGTCGAACAGCAGCCTGAAGTCAGCATTGAGGAGAAACCATGGAGGAATTTTCTATGGACACCTGAACGAAAAGAAGAGATTATGGAAATGATCAGGAATCATAAACCCCTGATGAAGTCTGTGAGCAAGGTTAGAATCCTAACGATCGGTCCTGTAGGAGCTGGAAAATCCAGTTTCTTCAACTCCATCAACTCCATCTTCACTGGTCATGTGACCAACAAAGCCATGTCAGGATCTGCAGGAACTAGTCTCACTGTACAGTTTCGCACATATCCAGTGAATGATGGTCGTGGAGGAAAGCCATTGCCATTTGTGTTGTGTGACACCATGGGACTCGAGGAGCAATCAGGTGCAGGACTGGATATTGAGGACATCAGCAGCATTCTTCAAGGTCACGTACCAGACCGCTATAAATTCAACCCCATGGCACCGTTTCAACCTGATGATCAAAAAGCCTCCAGACCTGCATCTCTGCAGGAGAAGATCCACTGTGTGGTCTACGTGATCGACGCCACCAAAATCTCCCTCATGTCTGATAAACTCGAGGAGAAACTTGCTTCCATACGCCGAAAAATTAACTCACTGGGCATCGCTCAGATCGTCCTCATGACCAAAGTAGATGAAGCCTGTCCTCTAGTGGAGAAGGACCTTCAAAGCCTCTACGTCAGCTCCTACATCAAGTCAAAGGTTCAGGAGGTGAGCTCTCGGTTGGGTGTGCCGGTGTCTTGTGTGTTACCGGTGAAGAACTACAGTCAGGAGCTGGAGCTGGAGCTCAACTGTGACGTCCTGCTGCTCTCCGCTCTACAGCAGATGCTTCGCTTCGCAGACGACTATTTTGATGATATTCGTCCTGTGGAGGACAacactaaataatttttttaagctcCTGTGACTTTATGCTCTATAAGAAGACTAATAGTTTGactattttgtacatttgttttgcCAATTATGTCAACTCggtgaaaatataaacaatatttgcttaaaaaatcTGCTACCCACCttaattttaacacaaaagTGGGTGTGGTTTATAAATTGATTGTGCAGTGATGAGTGTCATTTTCCAattattttagctgtacaaTAACAGCCCGTATATATCACAATAACTCTCTGCATCagaattaatgtaattaacCAATTAAATGATGCTGGTATAGGGCCCAACTGTGGCCAACAaccaaccattttttttttcaaaattacatCAGTGTAATGCATTCGATTTTTATTcctgcaaaaattaaaataacactcgGCTGATTATTAGTTGTACAATATGAAGCAAAACGTATCtacaataaaattgttataaacTTCA

Function

NR:

description
PREDICTED: interferon-induced protein 44-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223053.1 True 1931 mRNA 0.43 8 9370790 9374225

Neighbor

gene id symbol gene type direction distance location
LOC122327619 LOC107728561,LOC107592686,LOC107599470 coding downstream 1654 9366331 ~ 9369136 (-)
LOC122327620 si:ch211-197g15.9,LOC107655250,LOC107728562,LOC107669808,LOC107728557,LOC107592685,LOC107669809 coding downstream 5504 9361273 ~ 9365286 (-)
nphs2 nphs2,LOC107728590,LOC107669835,LOC107653553,LOC107592691,LOC107715061 coding downstream 110812 9257131 ~ 9259978 (-)
patj inadl,LOC107669802,LOC107653652,LOC107731530,LOC107715056,LOC107588105 coding downstream 374762 8892566 ~ 8996028 (-)
stx6 stx6,LOC107669815,LOC107731540,LOC107715114,LOC107653648 coding downstream 514335 8849997 ~ 8856455 (-)
LOC122328207 NA coding upstream 65681 9439906 ~ 9442370 (-)
LOC122328209 si:ch211-197g15.8,si:ch211-197g15.7,LOC107599470 coding upstream 69850 9444075 ~ 9446244 (-)
pip5k1ca pip5k1ca,LOC107592679,LOC107719627,LOC107599447,LOC107655246 coding upstream 98788 9473013 ~ 9497463 (-)
arhgap45b hmha1b,LOC107669820,LOC107655244,LOC107592722 coding upstream 132363 9506588 ~ 9532132 (-)
tjp3 tjp3,LOC107669831,LOC107719622,LOC107592677,LOC107655241,LOC107728571,LOC107599473 coding upstream 159157 9533382 ~ 9549007 (-)
G151122 NA non-coding downstream 223489 9145305 ~ 9147301 (-)
G151112 NA non-coding downstream 420731 8949616 ~ 8950059 (-)
G151111 NA non-coding downstream 421763 8948788 ~ 8949027 (-)
G151110 NA non-coding downstream 453647 8915901 ~ 8917143 (-)
G151086 NA non-coding downstream 562255 8807108 ~ 8808535 (-)
G151280 NA non-coding upstream 12920 9387145 ~ 9398096 (-)
G151289 NA non-coding upstream 51928 9426153 ~ 9464513 (-)
G151319 hapln4,LOC107554801,LOC107728536,LOC107719665,LOC107599484 non-coding upstream 242565 9616790 ~ 9621165 (-)
LOC122327858 NA non-coding upstream 445468 9819693 ~ 9865888 (-)
G151444 NA non-coding upstream 648993 10023218 ~ 10028439 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other downstream 198859 9013548 ~ 9171931 (-)
G151107 tal1,LOC107669848 other downstream 483849 8884121 ~ 8886941 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 758046 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 1077582 8286372 ~ 8293208 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other downstream 1752392 7609856 ~ 7618398 (-)
gpx4a gpx4a,LOC108429535 other upstream 124444 9498669 ~ 9503006 (-)
G151425 NA other upstream 583586 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 907797 10282022 ~ 10321663 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other upstream 1044902 10419127 ~ 10422354 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other upstream 1560827 10935052 ~ 10994952 (-)

Expression


Co-expression Network