hcn2b (hcn2b,LOC107569045,LOC107569931,LOC107719599,LOC107655221,LOC108429559)


Basic Information

Item Value
gene id hcn2b
gene name hcn2b,LOC107569045,LOC107569931,LOC107719599,LOC107655221,LOC108429559
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 10250867 ~ 10279453 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223057.1
CCAGCTAGGCATGCCTTAGCCTAAACAAAGACTTTGTCGATTCCCGGGTATCATCATCTACAACataatgtttagaaaaaaacgCAGCTAGACAATGAATCATCAAACATGCTACTACACACCACTAAcctacatttgcatatttaacacCTAGAATCGTAATATAGCGCATCCCGGCCTATTTTCCACTAATTTATCCTTGACATGGTTTAATTCCTGACTCCATTCATTATCTGAGCGCAGAGGAACGCGTAGCTCGTGATGGTTTAGTACCAGTAAGGGAGTGAACGCGTGCAGCCATGGCAACGCGACCGGTGTAGACGTCTGGTGACATTGGGACACGGAGTAAAGGACTGCAAGCGACTGCCCACGTCCGCGCTTTCGCAATCTGGCTGCGTCAGGATTCATCCCAAAGCAACGCCGTCATGGACGAAGCGGAGGACGGCGATGAAGACCACAAAGAGACTCGCAGGGGCGACATCCTCGACTCTTCCTCCAAGATGAAGAGTGTAACGCCAGGAGGGGGAGCAACGGCATCGGCGAGCAGGATCTCCAACAACAAGGACTTCGCCTCCGTCTCCCGTGGACGCAGCACGGAATCCACCTCGCTCCTCTGCCGCGGAGATGTTTCCAGGGACAGGAGCGGGTTTGACGGCGAGGATGGCACCGGAACGAGATGCGTGATCAACGGAGGCTGCCGAAGAAACGAGAGCTTGCCCTCAACCCTCTCCAAACCGGAGAAGCAGACAGGTGGAGGCTTCCCAGCATCTGCATGTCACTCCAGCACCTCCAGCATGGACGGCTCGGTCACTCCTGCCCCGACCGCCGCCGCTCCTCCTCCCGCTGACAAGAAGGACTCCAGGGTCTCCTTCTCCAGCGCTCCGGCTGCCCGCGGAGCGACCTCCAACCAGCCGGCCAATTCCGTCAGCTTTCCCAAGTCTGAGGATGGCCAGATCACGGCCGATGATGCCGAAGCCAGGGACAATCAAACTTACATGCAGAGGCAGTTCAGCTCCATGCTGCAGCCCGGGGTCAATAAATTCTCCCTGCGTATGTTTGGGAGTCAGAAGGCAGTGGAGAAGGAACAGGAACGAGTCAAATCCGCTGGCAATTGGATTATTCATCCGTACAGTGATTTCAGGTTCTACTGGGATTTCACAATGCTAATGTTTATGGTGGGCAACTTGATTATCATTCCTGTGGGCATCACCTTCTTCAAGGAGGAAACCACCACCCCTTGGATTATCTTCAACGTTGTGTCCGACACGTTCTTCCTCATGGACCTGGTACTGAACTTCCGCACAGGCATAGTCTACGAAGACAACACTGAGATAATACTGGACCCTGAAAAGATCAAGAAGAAGTACCTGAAGACGTGGTTTGTGGTGGACTTTGTCTCATCCATCCCGGTGGATTATATCTTTCTCATCGTAGAGAAAGGCATTGACTCTGAGGTTTACAAGACGGCCAGAGCGTTGAGGATTGTGCGCTTCACCAAGATCCTCAGTTTACTGCGACTTCTTAGACTGTCCAGATTGATTCGTTACATCCATCAATGGGAAGAGATCTTTCACATGACCTATGACCTGGCCAGTGCGGTGATGCGCATCTTCAATCTGATTGGCATGATGCTGCTTTTGTGCCACTGGGATGGCTGTCTGCAGTTCTTGGTGCCCATGTTGCAGGACTTTCCTTCAGACTGTTGGGTGTCTCTTAACAAGATGGTGAACGACTCCTGGAGCGAGCTGTACTCGTTTGCTCTGTTCAAGGCCATGAGCCATATGCTGTGTATTGGGTACGGACGCCAGGCACCTGAGAGTATGTCTGATATCTGGTTGACCATGCTGAGTATGATTGTGGGAGCCACCTGCTACGCCATGTTCATTGGCCACGCCACTGCCCTCATACAGTCGCTGGACTCTTCCCGGCGCCAGTACCAGGAGAAGTACAAGCAAGTTGAGCAGTATATGTCTTTCCACAAACTTCCGGCTGACTTTCGACAGAAGATCCATGATTACTATGAGCACAGGTACCAGGGCAAGATGTTCGACGAGGAAAGCATTTTGGAAGAACTGAACGAGCCGTTACGAGAGGAAATTGTCAACTTCAACTGCCGGAAGCTGGTGGCGTCCATGCCACTCTTTGCCAACGCAGATCCCAACTTTGTGACAGCGATGTTAACTAAACTCCGCTTCGAGGTCTTCCAACCAGGAGATTATATCATTCGTGAAGGAACCATCGGCAAGAAGATGTACTTCATTCAGCATGGAGTAGTCAGCGTCCTGACCAAAGGGAATATCGGCATGAAACTCTCTGACGGCTCCTACTTTGGGGAGATCTGCCTGTTGACCCGTGGAAGACGAACCGCAAGTGTGCGGGCAGACACCTACTGCCGGCTATACTCACTCTCTGTGGACAACTTCAATGAAGTACTAGAGGAGTATCCAATGATGAGAAGAGCATTTGAGACAGTAGCCATTGACCGTCTTGATCGAATAGGCAAGAAGAACTCCATCCTGATGCACAAAGTGCAACACGATCTTAACTCTGGCGTCTTCAACAACCGTGAGAATGAGATGATCCAGGAGATTGTCAAGTATGATCGGGAAATGGTTAAACTGGTTAAACAAGGGGACATGCAAAGGCCCAGGGCCATGTCTATGACACCTTCAACTCACGGGAACCTATTTTCACCTTCTAGTCAACCCTCCACAAGTTCTGCCATTGCTAGCCTTCAGCAGGCTGTTGCCATGAGCTTTTGTCCCCAGATGGGCAACCCTCTAGTGGGTTCTGGGGCAGTCCAGTCTCCTCGCATGGTTCGGCGCTTCCAAGTGGTCCAGAGCCAGACGCCCCCAGGCTCCCAGTACTCCACCTTAGCCCTTGCTTCTGCCCTTGCAAGCACACCTATCCACAGCCCTCTGGCAACTGCTGGTCGAACATTCCAGTATGGTTCTAGCCCCCCAGGTGCACCCTCAGGCTCTCAGTTATCCCTTGTACAGCAACACGTCCCCAGTCCCACACATCGACCACCAGTCCCCAGGAGCACTCTAAGCCAGGACGCCCGAGCCCTATCTGCCTCCCAGCCCTCCTTACCCCATGACATTGTGCAGCCAGTTGCCCCAAGCCCTCCCCAGTCCACCAGAGTCTCCTCCACTTCCATCGGTCCTCCTCAGAACCTCCCAGGTCCTGCTGGTCTTAGAGGAAGTATCCCACCAAGAATGGCACTACCCCATCAAATGTCTGTAGGTGCATTTCCTCCTGCCTCCCTCCCTCAGATGAGACCCAGCTTGGATTCAGGACAGCCCAAGAAGGATTCAATAATCAGTCTCCCAGAAACTGAACCACATCACGTCAGATCTAGGTTATCATCAAATTTGTGACCACAATAGAGTCGGTGGGCTCTGTCTGGGTCAGGAATGTGTGGACTCTCCTTCACCAAGTACTATTCCCGACCCCCTGTCACACCTTTGAAATTTATTCTGAGAATGTATGCGGTGTGACTGGCCATAAGGGCAAACAAACCCTCGAGACTTGATAGTACAAAATGAACATGTCTGTATCATTCTTACCACAATTGGAACTTTTCCATTTTACCTATGATATAAACATCAATGTAGCTTCCACCCTCACAATTTGCCTCtttgaaatggttttctttATTGTAGCTGTTCACAAAGATTACAAATGTACCACTCCCTTTTATATACTGTAGTTCAAACAATGCAAACTGATGTGTGTCTGAATACCGGTACTTAGCAGTTTGCTTCCGATCACAATGTAGGAGCTTACTCCCTATTAACATGAACCGGCTAGATGATAGATATTTAACCTATAATGCACAATATTAGAATTGTTCTagaaaaataatgtattcaACGGCTCGATAGTCCCAAATCGGTTTCGAAATGGGATGTATTCTTACTGGAACTGCTGTCCATGTATTTGTCTTATTCCTTCAGACCAAAGTTGGGCCAAAGGAAAATGTTGAGATTCGATGACATGTAAAGGTgtgtcaaatgaaatgaaaggataaaaacaaatataattttgttgCCTTGATTTGACTAAAAATACTGTGTGTGAACATACGTGTGTGATTTTCTTAGCTGTCCCACAACAGAGCACATTTCACTTGATTTAGCGTTGGGacaattaaatgaatcaatagTTTCCTAATTAAGGTTCATGGAAGTGAATACCACATACATTTCAAGCTAATTATGCTGCTGAAGTATGAAGTTTAACAACAGGGAGAATCATTTGCCCTTATCTGGTgtattcaaatgcatttaattcttaattacAAAGGACTTAAGtagctttgtttttaaaggtcAGATTTCATTAatcaactatttatttaaaagaaaacaaagaaaaacctcACAAATGAAACGTATGGATATTACTTAATGGTCAAAGCCTAAGCAGCAGGGACTGCACATTTTAGAAAGAGAGTGAGGTTATGTGAGCGAGTACATTGACGATGATTACCTCCTCCTCAGAAATGTGATGAGATCCATCAGGCGACGTGTAGACACTCCACTATCTCTTGTTTTGGAGCGCTAAATAACTTGCTCGCCATGGCTACCAAATTAGGTCTGATGTCCTCTCAGTCTTTGAATCCTTAAAAACCTATTTCTATTCCATGGTTACTTACCATTTCACACCTTGAAAGAGACTATAGGCTGCTCCTTTTTGCTCTTGGCATCATGGAGATGAAGCCAATGCGTGAATTGATCGCTTTAGACTTCTAAAAAACTTCGAAATGGGCAGATGGTTGAAAATAGCATCAGACTGTGCGCATGCAGGGTGTAAAGTTCATTTTTGATTACTTTGAATAGAGTCATTATGTCTTTCCCTTGtaaaaaatgagttttaaatgaATCCCTGTGGACATTGCTGTGCACAAACCAGTGCCGCCCCAtaagctgatttaaaaaaaaacaaaacttataGCTGCTTTTAATGATGCACATATCCTCAGTTTTATGTTGCACCAAACAGatgttgattttattcaatatatgCCAAGTGTTACTTTTTTGCCAAATTCTAAGTAATATTTCAAGCAATAAAGTTTACAATGTGTCCATGAGAAAAGAATATTGGAGTTATTGTTCAGTTGAAGTTCTCATTAACAAAACACACGTTGCATAACGTACCATTAAGTTTTACTATGCATTATGGTagaggaaaaaatgttttatgttatctTTTACAACTGTGCATACGTTTAATTTATCGTCATTTGGCCATACCATCTGTGGTTATTTTTCCATGACTACATTGATTAAAGAGCCATGTTTTTA

Function

symbol description
hcn2b Predicted to enable sodium channel activity and voltage-gated potassium channel activity. Predicted to act upstream of or within potassium ion transport; sodium ion transport; and transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human HCN2 (hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2).

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 isoform X1

GO: NA

KEGG:

id description
K04955 HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223057.1 True 5312 mRNA 0.46 8 10250867 10279453

Neighbor

gene id symbol gene type direction distance location
bsg bsg,LOC107728565,LOC107719600,LOC107569932 coding upstream 1006 10239077 ~ 10249861 (+)
fstl3 fstl3,LOC107687713,LOC107728592,LOC107569933,LOC107655223,LOC107554822,LOC107719601 coding upstream 19558 10223590 ~ 10231309 (+)
cbarpb LOC107655224,LOC107554820,LOC107719602,LOC107728578,LOC107687734 coding upstream 42082 10189214 ~ 10208785 (+)
si:ch211-212d10.1 NA coding upstream 178015 10070816 ~ 10072852 (+)
cilp2 cilp2,LOC107728576,LOC107687716,LOC107655229,LOC107719612,LOC107599460 coding upstream 206655 10030870 ~ 10044212 (+)
fgf22 fgf22,LOC107687712,LOC107569930,LOC107719646,LOC107655219,LOC107728567,LOC107569044 coding downstream 46122 10325575 ~ 10347666 (+)
LOC122328212 LOC107728582,LOC107687738 coding downstream 74393 10353846 ~ 10355418 (+)
LOC122328211 NA coding downstream 80673 10360126 ~ 10362209 (+)
LOC122328214 NA coding downstream 89642 10369095 ~ 10370513 (+)
LOC122328213 NA coding downstream 92751 10372204 ~ 10374126 (+)
G151382 NA non-coding upstream 61695 10188578 ~ 10189172 (+)
G151373 NA non-coding upstream 63284 10185635 ~ 10187583 (+)
G151345 LOC107655225,LOC107554818,LOC107728568,LOC107687715,LOC107599463 non-coding upstream 88421 10151480 ~ 10162446 (+)
LOC122327864 NA non-coding upstream 110713 10137300 ~ 10140154 (+)
G151358 NA non-coding upstream 168247 10081782 ~ 10082620 (+)
G151487 NA non-coding downstream 68376 10347829 ~ 10348886 (+)
G151516 NA non-coding downstream 109097 10388550 ~ 10421036 (+)
G151592 NA non-coding downstream 386603 10666056 ~ 10669212 (+)
LOC122327757 creb3l3a,LOC107729712,LOC107675914,LOC107596868,LOC107655213,LOC107719590,LOC107586456 non-coding downstream 422169 10701622 ~ 10709755 (+)
LOC122328232 NA non-coding downstream 429591 10709044 ~ 10709110 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 257426 9970622 ~ 9993441 (+)
LOC122328159 NA other upstream 287233 9923547 ~ 9963634 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other upstream 340074 9895441 ~ 9910793 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other upstream 357360 9888163 ~ 9893507 (+)
G151232 NA other upstream 670716 9577679 ~ 9580151 (+)
G151620 NA other downstream 526599 10806052 ~ 10837365 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other downstream 594975 10874428 ~ 10892023 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other downstream 638636 10918089 ~ 10922031 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other downstream 655582 10935035 ~ 10994944 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 1038654 11318107 ~ 11328230 (+)

Expression


Co-expression Network