ddx59 (ddx59,LOC107717990,LOC107578347)


Basic Information

Item Value
gene id ddx59
gene name ddx59,LOC107717990,LOC107578347
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 15189827 ~ 15194872 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223096.1
ccaatataataaaaataatcttcaGGATCATCATACAATAatagcaacaataataataataacaataataacaatagtatAGTGTGATATGCTTTTATTAGTAAAACATTATCATTTATTCTAAGAagatataatacatacatataatagtGTCATACAAAATGCAAAAGGTCCGCTTTGCCccagtaaaattaataaagctaAAATTTTGGTTTGTctgaataaagaaaattatttactcacctttaattattgcaaaataaacattaagatactttataaaatcataatattaatgCTTCCTAAAAAACATATTATGAACTGATCTAAGTTTTAAACAGAATTACAGAACAGGTGAGGGAACTTCACACCATTTGGTTACtgataaatattcaaaaccccTTAAAAACTACAACCCCCGGCTTTACTGTAACCTTTATGTGACGTCACAAGCACGCGACCGTTCGGAAGCGATTCTGTTCACGGATCTTATCTGAAATATGCGGCTTAAAGCGTTTCAAGAAGATATATAATcaacgtttttcttttttctgttttttattgatataaGCGTGGTAAATGTAGGTAGAAAATGTTTATGCCGAGATCACTGAAGCTCAAGAGAGCCCCGGAGTCCcatcaacagcagcagcagaaccCGAAGAGAAGCAAAGCGACACCCGAAGACACGGTTTCTGCATCTCCACCCCACACCTGTCCTCCAGGGGACACCGTTAATATAGAAAAAGAGGAGGAACCCCATCAGATAGAGACCGAAGACGCGGAGGAACCGGAGGAACCGGTGAAGTCCTTCAAGAAGAGCCAGAGATGGCCAGATCCCGGAGAACCTGTGTGTGTCATGTGCGGGCGATACGGGGAATACATCTGCGATAAAACAGACAACGATGTCTGCAGTCTGGAGTGTAAAGCCAGTCACCTCGCTAAAATGTGCTTGGATTTCGGAGAGAAGGTGTTTTGTAAAGATCTCCAGGAGGCTTCGGACGGCTCCAGTGCAGCCGACGCCGAGCACAGTTACTCCTACAAGGAGGATGTTTTCATATCTGAACTGACCGAGGGCCAGGTCGAGAGGGTTAAAGCCGAGCTGGCCATAGTGACCTCCGGCAGCGAGGTCTGTAGACCTGTCATAGAGTTCGAACACTGTAACTTTCCCGCAGCGCTTGGGCTCAACCTGAAGAAGGCCGGCTACGAGGCTCCCACCCCCGTCCAGATGCAGATGCTGCCCGTCGCTCTGAAAGGCAGAGATGTGATCGCTTCCGCAGATACAGGCTCCGGAAAGACGGTCGCCTTCCTTCTTCCAGTGGTCATGCATGCTCTCCGGAGCCGAGCTGCCTCTGCGTCTCGCCCCCCGTGTCTCATCCTGACCCCCACCAGAGAGCTGGCCGTCCAGATAGAGAAGCAGGCGAAAGAGCTGGTGATGGCTCTGCCCAACATGAGAACCGCTCTGCTCGTGGGGGGCATGCCTTTGCCCCCTCAGCTGCATCGGCTCAAGCAGAACATCAAGATAGTGATAGCCACCCCAGGACGCCTTCTGGAGATCCTGAAACAGAAGGCTGTACGGCTGGACAGCGTCAGGACCGTTGTGGTTGACGAGGCGGACACCATGCTGAAGATGGGATTCCAGCAGCAGGTTCTTGAGGTTCTGGAGCAGGTCGCTGAAGATCACCAGACGCTGTTGACGTCGGCTACCATTCCCACAGGGACGGAGCAGCTGGCGTCCCGTCTCACCCGCGACCCCGTGACCATCACCATCGGTCAGAAGAACCAACCCTGCGCCAGCGTCCGTCAAATAGTCCTCTGGGTGGAGGAGCCgtcgaagaagaagaagctttttgagattttaaatGACAGAAAGCTCTACCAGCCTCCAGTAGTTGTGTTTGTGGACTGCAAACTTGGGGCTGATTTGCTGTGTGAAGCTGTGCAGAAGGTCATGGGATTAAACACAGTTGCTATCCACTCCGACAAGCTGCAGTGGGAACGCAACAAAATAGTAAAgGGTCTTCTCGAGGGCCAGTATGAAGTGGTGGTCAGCACCGGGATTCTCGGCAGAGGACTGGATCTGGTCAACGTGAAGCTGGTAGTGAACTTCGACATGCCAGCTAACATGGATGAATACGTTCATCAGATCGGGCGAGCGGGTCGACTGGGCCACAGAGGCACCGCCATCACTTTcgtcaacaacaacaacaagcgTCTGTTTCTGGAGATTGTGAACCGAGTGAAACCCACGGGCTCCATCCTGCCTCCGCAGCTCCTGAACTCTCCACATCTGCACGAACAGCAGCGGAGAGCCAGACAGAGGAGCGGTCGAGCTCGGGACGGCCCCGTGTCCAAGAGCAGCCTCATCGACATCATCAGGAAGCACGACAGACGGTCTGCCAACAAATAACTGAACCATACCTTTATTAGCAGGGTGCCGCTTTTCTACTTTTGTATTTTCAATAAACGCTAAAGGCGAACGAA

Function

symbol description
ddx59 Predicted to enable RNA binding activity and RNA helicase activity. Human ortholog(s) of this gene implicated in orofaciodigital syndrome V. Orthologous to human DDX59 (DEAD-box helicase 59).

NR:

description
probable ATP-dependent RNA helicase DDX59 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K19466 DDX59; ATP-dependent RNA helicase DDX59

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223096.1 True 2484 mRNA 0.49 8 15189827 15194872

Neighbor

gene id symbol gene type direction distance location
scamp4 scamp4,LOC107717975,LOC107699425,LOC107719549,LOC107679840,LOC107586414 coding upstream 54231 15130400 ~ 15135596 (+)
ubxn6 LOC107717977,LOC107679838,LOC107593331,LOC107719551,LOC107699423,LOC107586413 coding upstream 69998 15114186 ~ 15119829 (+)
LOC122327882 LOC107679839,LOC107717989,LOC107719633,LOC107699428,LOC107586446 coding upstream 186857 15001033 ~ 15002970 (+)
lmcd1 lmcd1,LOC107662933 coding upstream 224240 14937292 ~ 14965587 (+)
gmppb gmppb coding upstream 252892 14928500 ~ 14936935 (+)
LOC122327180 LOC107593352,LOC107717987,LOC107679830,LOC107593351,LOC107717988,LOC107679833 coding downstream 25575 15220447 ~ 15288892 (+)
aspm LOC107712224,LOC107699437,LOC107586448,LOC107556171,LOC107577714 coding downstream 541029 15735901 ~ 15752487 (+)
LOC122327224 NA coding downstream 684382 15879254 ~ 15886245 (+)
LOC122327226 LOC107556173 coding downstream 706260 15901132 ~ 15938182 (+)
LOC122327890 NA coding downstream 748861 15943733 ~ 15956310 (+)
G153083 NA non-coding upstream 52204 15136335 ~ 15137623 (+)
G153065 NA non-coding upstream 77849 15110215 ~ 15111978 (+)
G153050 NA non-coding upstream 82901 15078846 ~ 15106926 (+)
G153056 NA non-coding upstream 99910 15087487 ~ 15089917 (+)
G153053 NA non-coding upstream 106173 15082920 ~ 15083654 (+)
LOC122327701 NA non-coding downstream 95823 15290695 ~ 15311067 (+)
G153178 NA non-coding downstream 256577 15451449 ~ 15512639 (+)
G153180 NA non-coding downstream 259092 15453964 ~ 15454729 (+)
G153181 NA non-coding downstream 260040 15454912 ~ 15490268 (+)
G153182 NA non-coding downstream 273178 15468050 ~ 15516152 (+)
sirt7 sirt7,LOC107667823,LOC107705833,LOC107569249,LOC107706268 other upstream 401134 14782382 ~ 14788693 (+)
G152808 LOC107588428,LOC107689379,LOC107573874,LOC107753503 other upstream 498019 14686504 ~ 14691808 (+)
G152767 cp,LOC107572087,LOC107732248 other upstream 727167 14458149 ~ 14462660 (+)
ptk7a ptk7a,LOC107702250,LOC107732247,LOC107588446,LOC107550662,LOC107697061 other upstream 876691 14283892 ~ 14313136 (+)
kcnip2 kcnip2,LOC107714153,LOC107679051,LOC107551372 other upstream 1111447 14071476 ~ 14078380 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other downstream 1044 15195916 ~ 15219764 (+)
dennd1b dennd1b,LOC107712206,LOC107586420,LOC107664901,LOC107741568,LOC107556170 other downstream 428221 15623093 ~ 15712086 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other downstream 809692 16004564 ~ 16035615 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other downstream 882709 16077581 ~ 16078895 (+)
LOC122327131 NA other downstream 968511 16163383 ~ 16171629 (+)

Expression


Co-expression Network