rtca (rtca,LOC107715104,LOC107669846,LOC107653637)


Basic Information

Item Value
gene id rtca
gene name rtca,LOC107715104,LOC107669846,LOC107653637
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8734158 ~ 8739243 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223143.1
GCAGAGCCCATCCACCATAGCAGTGTGACTGGCAAGACTAGTTGCCAGACTCAAAGTGTGATCGTATAGCCAGGAAATTCGCTCAATTCTTACTTGCGGTCGAGCCAAGtccacctttatttatttaaaccgaCCCAACCGCGCACTAAGTTTATTTCTCCTTTCAGTCGCGAAAAGCAGTTTCCCCCCGGCGCCAGAGCTTTTGTTGAGAAGTTCGCGTTCATCGCGGCATTGTTTGGGGGCCACACGCCGGTTTATGTTAACTTTCGCACAGTGTTGGAAGTCGCGCTCGGTCTCTTTATTCGCTCGCGCGCGTCGCCCCTCACGCGCACTTCGACACACCGCAACAATTTCTCGCTTTTCGCGAAAATGGCCGCAACTACGTTCGAAATGGACGGAAGTGTAATGGAAGGGGGAGGACAGATTTTAAGGGTGTCTGCGGCGCTGAGTTGCATCCAAGGGGCgtcaatcaaaataaataaaatccgaGCCGGTAGAAGCACCCCGGGTTTGAGGCCCCAGCATCTGTCAGGGCTCCAGCTGGTGAGGGACATGTGCAACGGCAATCTGGAAGGAGCCGCGGTGGGATCCACGGAAATCGCGCTGGCCCCTGGGAAGATCGAGGGCGGGAGTCACATCGCAGACACTCACACGGCCGGAAGCGTGGGGCTCCTGATGCAGATCTCGCTGCCGTGCGCCCTGTTCGCCCGGGGCCCGTCGGAGCTGTGCCTGAAGGGAGGGACCAACGCCGAGATGGCTCCTCAGATCGACTACACGCTGAAGGTCTTCAAACCGATCGCGGAGAGGTTCGGGGTTCACTTCGACTGCGATTTGAAGATGAGGGGTTACTATCCTAAGGGAGGTGGGGAGGTGGTGCTGAAGGTCAACCCCGTGAAGGAACTGAGTCCCATCAACATGACCGAAAGGGGAAATATCACCAAGATCTACGGCAGGGCCTTCGTGGCTGGAGTGCTGCCCTTTAAGCTGGCGAAGGACATGTCCACGGCGGCGGTGCGCACTATCAGAAAAGAAATTAAGGATCTGTACATCAACATTCAGTCTTTGCAAGAGAAGGACAAGGCCTGCGGCAATGGCAACGGGATCATAATAATTGCAGAATCATCCACCGGCTGCATATTTGCAGGATCATCTCTTGGCAAAAAAGGCGTGTACGCTGACAAAGTCGGCATCGAGGCTGCAGAAATGTTGCTAAGAAACATCAGGCATAACGGCTGCGTGGACGAGTTCTTGCAAGACCAGCTTATTGTTTTCATGGCCTTGGCGAACGGCACGTCCAGAATGCGAACGGGCCCGATCACGCTCCACACGCAGACGGCGATCCACGTGGCCGAGCAGCTCACCAACGCAAAATTTGTTATACGCAAATCGGAGGACGAGCACGCCAACAACGATACCTACATCATCGAGTGCCAGGGAGTGGGTGCCACCAACCCTAATTTGTGAAGACGTGGATCCGTTGAGGAGGACTTGTAGCAGAGACACACTACTACTGTAACTGACTGGGTGACGCGAAGACAACGTTATCTTTCGCGATTACGATACGttttgagttttgtttatttttgtttttgggcgCTGACCGCAGAGCCTGTCCGTATTTGTTCCCTGTTGTGTCCCATTCAGAAACTTTCGTTGTTACTCAGGGTATCGCCTTATACTGTAATGAAACAGACACTTTGAACTCTTCACGCAATATTCGCGGGATCCTGACCGCTTCTTTTCGGGCAAATTCGTTTTACCGCACGCTAACACGAGCCTTAACGTTTCATTAAACCCTTCCGATGCCGTTAACGATGATAACAATAGCTTAACCAATTTGCATGGACGTAGTAAAATACATGTATGTCACTGGTAAATTAGTGCACTGTGTGTACGAGGAGGAAAACGTTTTTCATTCAAGTTTATGGTTCCAtgtagctgcttttttttttttttttttggtttgttttatttaagtattttctgcATCTTTTTCGAAATTTCATTGCCATCTTATTCTATTTTTCGTCGACAGCCTTAGGTTATTGCCTTTTTGACTTCGAAAATGATTCCCGCTTGgtcattatttgtatttgttatttataagaTGGAatttctgatgtttttgttttttttttgctcaattatttttgccttttttttgccAACTTTAGGTGACCATGTTCTTTTGTAATTTGCATTAAGAAattgtggaggaaaaaaaacacaataaaataagagATAGACGTA

Function

symbol description
rtca Predicted to enable RNA-3'-phosphate cyclase activity. Predicted to act upstream of or within RNA processing. Predicted to be active in nucleus. Is expressed in several structures, including axis; lateral plate mesoderm; nervous system; neural plate; and primordial germ cell. Orthologous to human RTCA (RNA 3'-terminal phosphate cyclase).

NR:

description
PREDICTED: RNA 3'-terminal phosphate cyclase

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005524 ATP binding molecular_function
GO:0003963 RNA-3'-phosphate cyclase activity molecular_function

KEGG:

id description
K01974 RTCA, rtcA; RNA 3'-terminal phosphate cyclase (ATP)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223143.1 True 2250 mRNA 0.49 11 8734158 8739243

Neighbor

gene id symbol gene type direction distance location
cdc14ab cdc14ab,LOC107669826,LOC107715101,LOC107653633,LOC107588060,LOC107592738 coding downstream 8778 8687091 ~ 8725380 (-)
gpr88 gpr88,LOC107715102,LOC107669805,LOC107592712,LOC107588121,LOC107653578 coding downstream 49664 8683005 ~ 8684494 (-)
vcam1b LOC107669833,LOC107715100,LOC107592710 coding downstream 52711 8673506 ~ 8681447 (-)
slc30a7 slc30a7,LOC107588064 coding downstream 67436 8651809 ~ 8666722 (-)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 coding downstream 116541 8614242 ~ 8617617 (-)
trmt13 trmt13,LOC107588056,LOC107580953 coding upstream 13181 8752424 ~ 8757018 (-)
ttc39c ttc39c,LOC107653643,LOC107669847,LOC108429509,LOC106613856,LOC108270684 coding upstream 34622 8773865 ~ 8785783 (-)
lama3 LOC107669845,LOC107731542,LOC107592704 coding upstream 47515 8786758 ~ 8800742 (-)
cts12 cts12,LOC107592744,LOC107669798,LOC107588120,LOC107653645,LOC107731531,LOC107715055 coding upstream 62519 8801762 ~ 8805647 (-)
plekhb2 plekhb2,LOC107731538,LOC107669828,LOC107715113,LOC107653647 coding upstream 80608 8819851 ~ 8825290 (-)
G151029 NA non-coding downstream 234797 8499126 ~ 8499361 (-)
G151015 NA non-coding downstream 264906 8468471 ~ 8469252 (-)
G151016 LOC107715086 non-coding downstream 313418 8419634 ~ 8420740 (-)
G151020 NA non-coding downstream 321465 8412443 ~ 8412693 (-)
G151017 NA non-coding downstream 324029 8409316 ~ 8410129 (-)
G151086 NA non-coding upstream 67865 8807108 ~ 8808535 (-)
G151110 NA non-coding upstream 176658 8915901 ~ 8917143 (-)
G151111 NA non-coding upstream 209545 8948788 ~ 8949027 (-)
G151112 NA non-coding upstream 210373 8949616 ~ 8950059 (-)
G151122 NA non-coding upstream 406062 9145305 ~ 9147301 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 121414 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 440950 8286372 ~ 8293208 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other downstream 1115760 7609856 ~ 7618398 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 1678596 7020754 ~ 7055562 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other downstream 1820600 6906000 ~ 6913558 (-)
G151107 tal1,LOC107669848 other upstream 144878 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 274305 9013548 ~ 9171931 (-)
gpx4a gpx4a,LOC108429535 other upstream 759426 9498669 ~ 9503006 (-)
G151425 NA other upstream 1218568 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 1542779 10282022 ~ 10321663 (-)

Expression


Co-expression Network