rfxank (rfxank,LOC107687741,LOC107554808,LOC107728547,LOC107719616,LOC107599486)


Basic Information

Item Value
gene id rfxank
gene name rfxank,LOC107687741,LOC107554808,LOC107728547,LOC107719616,LOC107599486
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9886173 ~ 9887859 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223151.1
TATTCCAACTCTAATTGTTGAAAAAGACGCAGTTAATTTTGCAGCCAAAAGTGAAGTATACATTATGAGAAAAGCACCGTTTCTTAGGACATCGTTTATTAGACTTTGAGTGCGCGCGAGTTCAGTGCACTTGCGAGACTTCTATTTCAGTTTCACTTTTGCAGCCGAATCAGGAAACAAAAGCGGCGTATACGATCACACGAACCCGTGAAGTTTAAGATCATGTAAACAATCGAAGCAGGTGTGACGACTATGGAAAACCGAAATGATGAGAATGCTGTAAACCACTCGACAACTCTGACAAACAAACAGCGGGGGAATGAAGTCACAGTCCGACCCGCCACTTTAGACaACCTCTCAATTCATCAGCTGGCAGCCCATGGAGAGATTTCACAACTGGAATTACATTTATCCAAAGACAGCTCTCTACTTAACTGTCAGGATGAGCGAGGTTTCACACCACTAATGTGGGCTGCTGCTTTTGGAGAGATAATGATGGTGGAGTTCCTCCTTCAGAAGGGAGCCGATCCGAGAACACTTGCTAGAGAACGAGAAAGTGCCTTGTCTTTGGCCAGCGCCGGAGGATTTGCAGATATTGTTAATGTTCTCCTACAAAACGGTGTCGATATTGATTCCTATGACTGGAACGGTGGGACCCCTCTTCTGTATGCAGTACGTGGGAATCACACGAAATGTGTCGAAGCTCTCTTGAGATGCGGGGCGGATATCACGTTTGAGGCAGACTCCGGCTACAGTCCTGTTGCTCTCGCTGTTGCATTGGGCCACAAAAAAGTGCAAAAACTGCTTGAAGATCACGTTTTGAAGCTCTTTCGGGAACCGGTTTCTGTGTCTGGAAACACATGAAGCAGAGGGCCGCTCGTACTAGACCTTATAATAATCTTGCGTAtattttatagctttattttGACACGAGAGATGTAACAAACAATCAGTTTTTCTatcgtttttaattaaaaacacttttttttacaaa
>XM_043223152.1
TATTCCAACTCTAATTGTTGAAAAAGACGCAGTTAATTTTGCAGCCAAAAGTGAAGTATACATTATGAGAAAAGCACCGTTTCTTAGGACATCGTTTATTAGACTTTGAGTGCGCGCGAGTTCAGTGCACTTGCGAGACTTCTATTTCAGTTTCACTTTTGCAGCCGAATCAGGAAACAAAAGCGGCGTATACGATCACACGAACCCGTGAAGTTTAAGATCATGTAAACAATCGAAGGTGTGACGACTATGGAAAACCGAAATGATGAGAATGCTGTAAACCACTCGACAACTCTGACAAACAAACAGCGGGGGAATGAAGTCACAGTCCGACCCGCCACTTTAGACaACCTCTCAATTCATCAGCTGGCAGCCCATGGAGAGATTTCACAACTGGAATTACATTTATCCAAAGACAGCTCTCTACTTAACTGTCAGGATGAGCGAGGTTTCACACCACTAATGTGGGCTGCTGCTTTTGGAGAGATAATGATGGTGGAGTTCCTCCTTCAGAAGGGAGCCGATCCGAGAACACTTGCTAGAGAACGAGAAAGTGCCTTGTCTTTGGCCAGCGCCGGAGGATTTGCAGATATTGTTAATGTTCTCCTACAAAACGGTGTCGATATTGATTCCTATGACTGGAACGGTGGGACCCCTCTTCTGTATGCAGTACGTGGGAATCACACGAAATGTGTCGAAGCTCTCTTGAGATGCGGGGCGGATATCACGTTTGAGGCAGACTCCGGCTACAGTCCTGTTGCTCTCGCTGTTGCATTGGGCCACAAAAAAGTGCAAAAACTGCTTGAAGATCACGTTTTGAAGCTCTTTCGGGAACCGGTTTCTGTGTCTGGAAACACATGAAGCAGAGGGCCGCTCGTACTAGACCTTATAATAATCTTGCGTAtattttatagctttattttGACACGAGAGATGTAACAAACAATCAGTTTTTCTatcgtttttaattaaaaacacttttttttacaaa

Function

symbol description
rfxank Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in MHC class II deficiency and severe combined immunodeficiency. Orthologous to human RFXANK (regulatory factor X associated ankyrin containing protein).

NR:

description
DNA-binding protein RFXANK-like

GO: NA

KEGG:

id description
K08062 RFXANK; regulatory factor X-associated ankyrin-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223151.1 True 994 mRNA 0.44 8 9886173 9887859
XM_043223152.1 False 991 mRNA 0.44 8 9886173 9887859

Neighbor

gene id symbol gene type direction distance location
LOC122328188 ncan,ncanb,LOC107728538,LOC107687726,LOC107554802,LOC107719650,LOC107599474,LOC107097932 coding downstream 97798 9730641 ~ 9788375 (-)
LOC122328187 ncan,ncanb,LOC107728538,LOC107554802,LOC107687726,LOC107599474,LOC107719650 coding downstream 197033 9686468 ~ 9689140 (-)
LOC122328186 ncan,LOC107687726,LOC107719650,LOC107599474,LOC107728538 coding downstream 203582 9625685 ~ 9682591 (-)
si:ch73-63e15.2 si:ch73-63e15.2,LOC107669818,LOC107592676,LOC107599449,LOC107655177 coding downstream 288667 9555171 ~ 9597506 (-)
tjp3 tjp3,LOC107669831,LOC107719622,LOC107592677,LOC107655241,LOC107728571,LOC107599473 coding downstream 337166 9533382 ~ 9549007 (-)
tmem221 NA coding upstream 2691 9890550 ~ 9894967 (-)
tmem161a tmem161a,LOC107728546,LOC107599454,LOC107719614,LOC107554814,LOC107687722 coding upstream 25564 9913423 ~ 9918916 (-)
tssk6 tssk6,LOC107687737,LOC107728539,LOC107554804,LOC107599475,LOC107719648 coding upstream 106333 9994192 ~ 9995007 (-)
si:ch211-212d10.2 si:ch211-212d10.2,LOC107728577,LOC107687719,LOC106613739,LOC101487565 coding upstream 156363 10044222 ~ 10047874 (-)
cirbpb LOC107599461,LOC107655227,LOC107719610 coding upstream 187173 10075032 ~ 10080097 (-)
LOC122327858 NA non-coding downstream 20285 9819693 ~ 9865888 (-)
G151319 hapln4,LOC107554801,LOC107728536,LOC107719665,LOC107599484 non-coding downstream 265008 9616790 ~ 9621165 (-)
G151289 NA non-coding downstream 421660 9426153 ~ 9464513 (-)
G151266 NA non-coding downstream 431826 9360531 ~ 9454347 (-)
G151280 NA non-coding downstream 488077 9387145 ~ 9398096 (-)
G151444 NA non-coding upstream 135359 10023218 ~ 10028439 (-)
G151439 NA non-coding upstream 166059 10053918 ~ 10072892 (-)
G151468 LOC107687734,LOC107728578,LOC107719602,LOC107655224,LOC107569929 non-coding upstream 301971 10189830 ~ 10194857 (-)
G151457 NA non-coding upstream 357059 10244918 ~ 10249842 (-)
G151507 NA non-coding upstream 487314 10375173 ~ 10375615 (-)
gpx4a gpx4a,LOC108429535 other downstream 383167 9498669 ~ 9503006 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other downstream 714242 9013548 ~ 9171931 (-)
G151107 tal1,LOC107669848 other downstream 999232 8884121 ~ 8886941 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 1273429 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 1592965 8286372 ~ 8293208 (-)
G151425 NA other upstream 69952 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 394163 10282022 ~ 10321663 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other upstream 531268 10419127 ~ 10422354 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other upstream 1047193 10935052 ~ 10994952 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other upstream 1286284 11174143 ~ 11188692 (-)

Expression


Co-expression Network