rab11ba (rab11b,LOC107599444,LOC107592688,LOC107655249,LOC108429533,LOC102310619)


Basic Information

Item Value
gene id rab11ba
gene name rab11b,LOC107599444,LOC107592688,LOC107655249,LOC108429533,LOC102310619
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 9449289 ~ 9454347 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223186.1
TTAAAAAGATTCGACTCATGAAAACGATTCATTGACGAATCGGACATCGCTAATCAGGAGAGGTCCGTCGCCCAACAACAACGTTTTAGTGCGGAAAACCGACCATGGGGACCCGTGACGAcgaatatgattatttatttaaagtGGTGCTCATTGGAGACTCTGGTGTGGGGAAGAGTAACCTGTTGTCCCGTTTCACTCGCAATGAGTTCAACCTGGAGAGCAAGAGCACCATTGGCGTGGAGTTCGCAACACGCAGCATCCAAGTAGACGGCAAGACCATAAAAGCCCAGATCTGGGATACAGCGGGACAGGAACGCTACAGAGCGATCACATCAGCATACTACCGGGGTGCAGTTGGAGCTCTTTTGGTCTATGACATTGCAAAGCATCTGACTTACGAGAATGTGGAGCGCTGGCTGAAGGAGCTGCGGGATCACGCCGATAACAACATCGTCATCATGCTGGTGGGCAACAAGAGCGACTTGAGGCACCTCAGGGCCGTTCCCACCGACGAGGCCAGAGCTTTCGCAGAGAAGAACAATCTCTCCTTCATCGAAACATCAGCTTTGGACTCCACGAATGTGGAGgaggcatttaaaaacatactaacaGAAATCTATCGGATCGTATCGCAGAAGCAGATCGCCGACAGGTCCATGCACGACGAGTCTCCCGGCAACAACGTAGTGGACATCAGCGTGCCGCCCACTACCGACGGTTTAAAGGGCAACAAATTTCAGTGCTGTCAGAACCTGTGACCCCACTTCTCCTCGGCTCTACCCCCACCCTTGGGCTTCAGTTCCCCTCTATTTATCTCGGCTTTGCTCCTGTGTGTTGTGCTATGGCTACGGCTCCTTCCTCTTTTTACCTCGTTGTGATTTCCACGCTAATTCTAGACGTCCCGTAGAAGCGTGAATCTCTAGGTAACATTCCTTTTCCTTGTTTTGGGggatttcttgtttgtttgtccctcctctttttcttcttcttcttcttattatccACTGTCTAAATTCACGTTTTCCACGGAAGTGATTTATTTGGGCGCTGATCGTGTGATCCGCTCCTACGGAAAAGGGATGGTGAGGGATCAGTGTGTCTTCGGCTTCCTCTGATGGTTATTCTCTGGGATCCACACTAAATGCCCACCGTCTGTTGAGCCAGATCCCTGACTTGAGATAAAAgggcaagttttttttttttttttttggggtgaaggaaaaaaaaaaaaaaaaacacggatTCGCTTCGGATCGTGCGGATACCAAAGGAGGGCGGCTGTCATCTTTATTTCAATTTGTAAACATTTCACACGTCACACCTCTAGTCCTATCCTGCAATATTTTACGCCAGGGCTGACGGGTGTGAAGTTGTGCAGTTTGATCAACGTGTTCAGATTGCCGTATATATAGCAGTTATGCAAATGCATCTATTAAGCATTTCATGAATTgagaaattattcaaataacagtttttatatatatatatatatatatatatatataaaaattatgtaaactAATCATTGCATTGCTGAGTTATTATAGCTCTTCAGTGGAAAAATGCAATGGTGCGCAGTGTTTTAGATGGTCAGTTGTTTTCACCGGTGAAAGtccatttatatttgattgtttGACTCAAGTCATACGGCTAGTTTGGAAATGCCTTATGTTTTCCCATACTGTGATTAAGATGCCTTTTTCGAGTGTGGTTATGTGACATTTACACATCCATGAAGTCACAACAGCTGTTTTGCCTTTTATCAGGTtacattaaaatggaaaataaaccaaattacTGTCAA
>XM_043223187.1
CACGTCGCAACGGACACAtGGTGCTCATTGGAGACTCTGGTGTGGGGAAGAGTAACCTGTTGTCCCGTTTCACTCGCAATGAGTTCAACCTGGAGAGCAAGAGCACCATTGGCGTGGAGTTCGCAACACGCAGCATCCAAGTAGACGGCAAGACCATAAAAGCCCAGATCTGGGATACAGCGGGACAGGAACGCTACAGAGCGATCACATCAGCATACTACCGGGGTGCAGTTGGAGCTCTTTTGGTCTATGACATTGCAAAGCATCTGACTTACGAGAATGTGGAGCGCTGGCTGAAGGAGCTGCGGGATCACGCCGATAACAACATCGTCATCATGCTGGTGGGCAACAAGAGCGACTTGAGGCACCTCAGGGCCGTTCCCACCGACGAGGCCAGAGCTTTCGCAGAGAAGAACAATCTCTCCTTCATCGAAACATCAGCTTTGGACTCCACGAATGTGGAGgaggcatttaaaaacatactaacaGAAATCTATCGGATCGTATCGCAGAAGCAGATCGCCGACAGGTCCATGCACGACGAGTCTCCCGGCAACAACGTAGTGGACATCAGCGTGCCGCCCACTACCGACGGTTTAAAGGGCAACAAATTTCAGTGCTGTCAGAACCTGTGACCCCACTTCTCCTCGGCTCTACCCCCACCCTTGGGCTTCAGTTCCCCTCTATTTATCTCGGCTTTGCTCCTGTGTGTTGTGCTATGGCTACGGCTCCTTCCTCTTTTTACCTCGTTGTGATTTCCACGCTAATTCTAGACGTCCCGTAGAAGCGTGAATCTCTAGGTAACATTCCTTTTCCTTGTTTTGGGggatttcttgtttgtttgtccctcctctttttcttcttcttcttcttattatccACTGTCTAAATTCACGTTTTCCACGGAAGTGATTTATTTGGGCGCTGATCGTGTGATCCGCTCCTACGGAAAAGGGATGGTGAGGGATCAGTGTGTCTTCGGCTTCCTCTGATGGTTATTCTCTGGGATCCACACTAAATGCCCACCGTCTGTTGAGCCAGATCCCTGACTTGAGATAAAAgggcaagttttttttttttttttttggggtgaaggaaaaaaaaaaaaaaaaacacggatTCGCTTCGGATCGTGCGGATACCAAAGGAGGGCGGCTGTCATCTTTATTTCAATTTGTAAACATTTCACACGTCACACCTCTAGTCCTATCCTGCAATATTTTACGCCAGGGCTGACGGGTGTGAAGTTGTGCAGTTTGATCAACGTGTTCAGATTGCCGTATATATAGCAGTTATGCAAATGCATCTATTAAGCATTTCATGAATTgagaaattattcaaataacagtttttatatatatatatatatatatatatatataaaaattatgtaaactAATCATTGCATTGCTGAGTTATTATAGCTCTTCAGTGGAAAAATGCAATGGTGCGCAGTGTTTTAGATGGTCAGTTGTTTTCACCGGTGAAAGtccatttatatttgattgtttGACTCAAGTCATACGGCTAGTTTGGAAATGCCTTATGTTTTCCCATACTGTGATTAAGATGCCTTTTTCGAGTGTGGTTATGTGACATTTACACATCCATGAAGTCACAACAGCTGTTTTGCCTTTTATCAGGTtacattaaaatggaaaataaaccaaattacTGTCAA

Function

symbol description
rab11b Enables GTPase activity; guanyl ribonucleotide binding activity; and myosin V binding activity. Involved in several processes, including amyloid-beta clearance by transcytosis; cellular response to acidic pH; and constitutive secretory pathway. Located in phagocytic vesicle.

NR:

description
PREDICTED: ras-related protein Rab-11B-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223186.1 True 1807 mRNA 0.44 5 9449289 9454347
XM_043223187.1 False 1681 mRNA 0.45 5 9450451 9454347

Neighbor

gene id symbol gene type direction distance location
rabgap1l rabgap1l,LOC107728556,LOC107715121,LOC106613570,LOC107592725,LOC106574055,LOC107655181,LOC107669795 coding upstream 88974 9283786 ~ 9360315 (+)
gpr52 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding upstream 132282 9309806 ~ 9317007 (+)
fam163ab LOC107728553,LOC107592741,LOC107669804 coding upstream 167447 9272754 ~ 9281842 (+)
tdrd5 LOC107669834,LOC107728589,LOC107592689,LOC107715068,LOC107653580,LOC107576589 coding upstream 179154 9260762 ~ 9270135 (+)
axdnd1 axdnd1,LOC107669794,LOC107653552,LOC107728533,LOC107578687 coding upstream 192027 9248687 ~ 9257262 (+)
hnrnpm hnrnpm,LOC107599446,LOC107728570,LOC107592680 coding downstream 11161 9465508 ~ 9472502 (+)
polr2eb polr2e,polr2eb,LOC107669821,LOC107599482 coding downstream 49203 9503550 ~ 9506291 (+)
tm6sf2b tm6sf2,LOC107599483,LOC107719666 coding downstream 148103 9602450 ~ 9612501 (+)
hapln4 hapln4,LOC107728536,LOC107599484,LOC107719665,LOC107687742,LOC107554801 coding downstream 159532 9613879 ~ 9619115 (+)
LOC122327676 nr2c2ap,LOC107687739,LOC107728548,LOC107554809,LOC107719618,LOC107599487 coding downstream 430165 9884512 ~ 9886217 (+)
G151178 NA non-coding upstream 83967 9360428 ~ 9365322 (+)
G151163 NA non-coding upstream 166285 9277690 ~ 9283004 (+)
G150983 NA non-coding upstream 301901 9145211 ~ 9147388 (+)
LOC122327612 NA non-coding upstream 378117 9068732 ~ 9071172 (+)
G150970 NA non-coding upstream 419379 9025901 ~ 9029910 (+)
G151194 NA non-coding downstream 18639 9472986 ~ 9475031 (+)
G151210 LOC107669820,LOC107592722,LOC107655244,LOC107599472 non-coding downstream 60393 9514740 ~ 9515568 (+)
G151294 NA non-coding downstream 146209 9600556 ~ 9667133 (+)
G151308 NA non-coding downstream 307807 9762154 ~ 9762419 (+)
G151333 NA non-coding downstream 440699 9895046 ~ 9895327 (+)
G150965 NA other upstream 460598 8988186 ~ 8988691 (+)
G150946 NA other upstream 527322 8921698 ~ 8921967 (+)
G150945 NA other upstream 529509 8919279 ~ 8919780 (+)
G150940 NA other upstream 546978 8901143 ~ 8902311 (+)
pdzk1ip1 NA other upstream 557090 8890622 ~ 8892199 (+)
march2 march2,LOC107728591,LOC107669840,LOC107655247,LOC107592682,LOC107599445 other downstream 491 9454838 ~ 9530165 (+)
G151232 NA other downstream 123332 9577679 ~ 9580151 (+)
borcs8 borcs8,LOC107728595,LOC107554813,LOC107599453 other downstream 433816 9888163 ~ 9893507 (+)
mef2b LOC107687723,LOC107554810,LOC107728551,LOC107719669,LOC107655235,LOC107599488 other downstream 441094 9895441 ~ 9910793 (+)
LOC122328159 NA other downstream 469200 9923547 ~ 9963634 (+)

Expression


Co-expression Network