sec13 (sec13,LOC107719942,LOC107557974,LOC107691189,LOC107657312)


Basic Information

Item Value
gene id sec13
gene name sec13,LOC107719942,LOC107557974,LOC107691189,LOC107657312
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16329725 ~ 16337118 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223195.1
CCCGGAGTCTTTAGCGGCGGGGACACAGTCCGCGCTGATCTCTGTCTGCCACGTCGGAAATATTATCAGTAAATTCATTTCTGAAGCCCTGAAGAGCTTCTAGGACGCTTTCTGAAGATTTCAGCGGCGAAGCTGCTTGCTGGAGCGATATATTCAAATATGGTTTCGGTCATTAACACAGTGGACACCTCACACGAGGATATGATCCATGACGCTCAGATGGATTATTACGGCACCCGACTGGCCACCTGCTCCTCTGACCGCTCCGTGAAGATCTTTGACGTCAAGAACGGAGGACAGATCCTTGTGGCTGATCTCAGGGGtcACGAGGGGCCGGTGTGGCAGGTGGCCTGGGCTCACCCCATGTACGGGAACATCCTGGCGTCCTGCTCCTACGACAGGAAGGTGATCATCTGGAAGGAGGAGAACGGCTCCTGGGAGAAGATGTATGAGTACACGGGCCACGACTCGTCCGTGAACTCCGTCTGCTGGGGCCCCTACGACTTCGGCCTGCTCCTGGCCTGCGGCAGCTCCGACGGGGCCATCTCGGTCCTGACCTGCTCCGGAGACGGACACTGGGACATCAAGAAGATCAACAACGCACACACCATCGGCTGTAACGCTGTGAGCTGGGCCCCAGCTGTGGTTCCTGGGAGTCTTATTGAGCAGCCGACAGGACAGAAGCCCAACTACATCAAGAGATTTGTGTCTGGAGGCTGTGACAATCTGGTCAAGCTGTGGAAAGAAGAGGACGGTCAGTGGAAGGAGGACCAGAAGCTGGAGGCTCACAGCGATTGGGTGAGAGACGTGGGCTGGGCTCCGTCCATCGGCCTGCCGTCCAGCACCATCGCCAGCTGCTCTCAGGACGGCCGTGTGTTCATCTGGACGTGTGACGACCCGGCCGGGAACACCTGGACCGCTAAACTCCTGCACAAGTTCAGTGACGTGGTGTGGCACGTGAGCTGGTCCATCACCGGGAACATCCTGGCCGTGTCCGGAGGAGATAACAAGGTGACCCTGTGGAAGGAGTCTGTGGACGGACAGTGGGCTTGTATCAGTGACGTCAACAAAGGTCAAGGGGTCGTGACCTCCATCACAGACGGCCAGCAGAACGAGCAGTGAAGACGTCCTCCTGCCCTCAAAGACTTTCACTTTCCTCCCGGTCTCCTCCAAACAGGATTATTTCTGATCGTTCTTAACGTGTCATTCACAGAGAAGTCAAACACAGAAGCTGATAAAAGCCGGCTTTAGTGTGTTTCAACACGACCGCTGAAGAATAAAGgtttctatattaaaatata

Function

symbol description
sec13 Predicted to enable structural molecule activity. Acts upstream of or within several processes, including animal organ development; extracellular matrix constituent secretion; and opsin transport. Located in endoplasmic reticulum exit site. Is expressed in several structures, including alar plate midbrain region; digestive system; optic vesicle; pectoral fin musculature; and skeletal element. Orthologous to human SEC13 (SEC13 homolog, nuclear pore and COPII coat complex component).

NR:

description
PREDICTED: protein SEC13 homolog isoform X1

GO:

id name namespace
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0070278 extracellular matrix constituent secretion biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0036372 opsin transport biological_process
GO:0051216 cartilage development biological_process
GO:0007029 endoplasmic reticulum organization biological_process
GO:0001889 liver development biological_process
GO:0055123 digestive system development biological_process
GO:0010842 retina layer formation biological_process
GO:0070971 endoplasmic reticulum exit site cellular_component

KEGG:

id description
K14004 SEC13; protein transport protein SEC13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223195.1 True 1301 mRNA 0.55 9 16329725 16337118

Neighbor

gene id symbol gene type direction distance location
LOC122328055 NA coding upstream 85183 16241163 ~ 16244542 (+)
LOC122327679 NA coding upstream 92704 16233607 ~ 16237021 (+)
LOC122327230 LOC107574244,LOC106946732 coding upstream 174174 16153142 ~ 16155551 (+)
trnaa-agc_28 NA coding upstream 179881 16149772 ~ 16149844 (+)
trnaa-agc_27 NA coding upstream 182588 16147065 ~ 16147137 (+)
grip2b LOC107719945,LOC108436697,LOC107720331 coding downstream 45067 16382185 ~ 16477611 (+)
manf manf,LOC107677041,LOC107691893,LOC107592842,LOC107750980,LOC107567190,LOC107708486 coding downstream 413595 16750713 ~ 16752754 (+)
rbm15b rbm15b,LOC107592829,LOC107750977,LOC107708489,LOC107567194,LOC107691881,LOC107677039 coding downstream 415785 16752903 ~ 16756930 (+)
dag1 dag1,LOC107592827,LOC107757307,LOC107691879,LOC107564392,LOC107708488,LOC107678152 coding downstream 703544 17040662 ~ 17069967 (+)
srfa srfa,LOC107568266,LOC107679061,LOC107720394,LOC107551382,LOC107706117 coding downstream 1016699 17353817 ~ 17369897 (+)
G153399 NA non-coding upstream 24075 16303731 ~ 16305650 (+)
G153364 NA non-coding upstream 78752 16250440 ~ 16250973 (+)
G153321 NA non-coding upstream 346903 15982592 ~ 15982822 (+)
G153320 NA non-coding upstream 348379 15981122 ~ 15981346 (+)
G153236 NA non-coding upstream 492971 15835260 ~ 15836754 (+)
G153418 NA non-coding downstream 83534 16420652 ~ 16481470 (+)
G153434 NA non-coding downstream 164636 16501754 ~ 16502104 (+)
LOC122327176 NA non-coding downstream 185512 16522630 ~ 16526808 (+)
LOC122328065 NA non-coding downstream 197901 16535019 ~ 16545350 (+)
G153501 NA non-coding downstream 217815 16554933 ~ 16556610 (+)
LOC122327131 NA other upstream 158096 16163383 ~ 16171629 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other upstream 250830 16077581 ~ 16078895 (+)
G153322 LOC107565915,LOC107680281,LOC107709523,LOC107565908,LOC107680280,LOC107706842,LOC107576284 other upstream 294110 16004564 ~ 16035615 (+)
dennd1b dennd1b,LOC107712206,LOC107586420,LOC107664901,LOC107741568,LOC107556170 other upstream 617639 15623093 ~ 15712086 (+)
kif14 kif14,LOC107679839,LOC107699428,LOC107719633,LOC107586446,LOC107717989 other upstream 1109961 15195916 ~ 15219764 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other downstream 156584 16493702 ~ 16499413 (+)
dock3 dock3,LOC107592830,LOC107691882,LOC107567192 other downstream 263512 16600630 ~ 16749928 (+)
tsc22d2 tsc22d2,LOC107732673,LOC107679060,LOC107701225,LOC107568259,LOC107720398,LOC107551385 other downstream 1062187 17399305 ~ 17419244 (+)
G153741 LOC107661227 other downstream 1589233 17926351 ~ 17927244 (+)

Expression


Co-expression Network