rbm15b (rbm15b,LOC107592829,LOC107750977,LOC107708489,LOC107567194,LOC107691881,LOC107677039)


Basic Information

Item Value
gene id rbm15b
gene name rbm15b,LOC107592829,LOC107750977,LOC107708489,LOC107567194,LOC107691881,LOC107677039
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16752903 ~ 16756930 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223197.1
atcAAGTTGCAGCTTTCGGTACATTAAAGTCCATGCTCAGCATGTCACACGAAATTCGTATTTTCTTATTCATAGTGTGCGTTTTTTAACATATTACGTTTGCAAAAGTGcgtttattacataaataatatcgTGCTGCCGTATCCATTTCAAATTCCGAAACGTATGCATCCATTTCGCTcctaaaacttaattttttttagcgtCGATATTCATTTTCCACAACCATCACAGCGTCACGCGACGCGTACCTGACGTCAGCGCAGGCTCCTCCCACTCGCGGAGCGCGCACATTCCTTTTGTCCAAGATGGCGGAACAGATGCAGCTGAGGGGACGCTAACGTTTgccgttttgtttttatctgcgAAATCCTCCACCCGGGCGAACGCTTTCTCGCGCAGACGCCGGCCGAGACCCTCCTCGCGGATGCGCAAACCCCCCCGGAGCCGCGGGACACCACCTCGGAGCTGATTTCGTATTTTCGCGGCGGGAGCATCGCTGCAAAAATGAAGCGACAGGCCGAGCGCGACGCGAGCCCGTCCAGAACGCTCGCCAAACGCGTGCGCGAGCGGGAACGGGATCGCGAGCCGAACCCGCCGCTCGCGCTGCTGCTCGCCGAGAGCCGGGCGTATCACAAGCGAAGCCGCAGCCGAGAGCGGGAAAAACCGCGCGTCCGCGAGGAGAGGGACGGTCTGCATCACCGCCCGCATCACGAAGCTGGTCTGCTGGGTCGAGCCCCTCTCCGAACCGCGTCCGTCCTGCCCAAAGGGAAGACCCCGTCGGCGGACGCGGCGGGCGCGCGGCTGGAATACAAGACGCTGCTCATCAGCAACCTGGGATCGCAGCTCACCGACGAGCATGTGGAGGACGGGCTTTTTCACGAGTTCAAAAAGTTCGGGGACGTGAGCGTCAAGCTGTCTCACACGCCGGAGCTGGGTCGCGTCGCCTACGTCAACTTCAGGCACACGGAAAACGCGCGGGAAGCGCGTCACGCCAAAACCAGGTTGGTGCTGTATGACCGTCCGCTCAAAGTTGAGCCCATGTACATGCGGCGTCGCAGCGTCACGCCTCCGGATGTGAGTTACGTGTCTCTGCACAGCGCTGCCTACACTTACCGGCAGCGCTCGCTCTCACCGGGCGCCGGGAGCAGCGCCGTGCGGGATGCGAGACCCAGGCACTACGTCGAGGGCGTGGGACTCAGCAGGGACCGTGTTTTGGACTATTACAGCGCGCTGGAGGAGAGAAGCCGCGCGTATGCCTATCAGCTTCCCGAGGAGGACTTAAAGCCAGAGGACGACCAGAGGGCCACGAGGAACTTGTTCATCGGCAACTTGGACCATAACATTTCTGAGGTGGAGCTGCGACAAGGGTTTGACAAGTACGGGATTATCGAAGAAGTCGTCATCAAGCGGCCCGCTCGCGGGCAAGGGGGTGCTTATGCTTTTCTCAAATTTCAAAACTTGGATATGGCTCACCGGGCCAAAGTGGCCATGCAGGGACGCATGATCAACGGCAACCCGATTAAGATCGGATACGGGAAAGCCAATCCGACGACTCGGCTCTGGGTGGGTGGACTCGGCCCGAACACCTCGCTGGCTGCTTTAGCCCGCGAGTTCGATCGTTTCGGGAGCATTCGCACCATCGACTACGTCAAAGGAGATAACTTTGCTTACATTCACTACGAGAGCCTGGATGCTGCCCAGGCTGCTTGTGCGCAAATGCGTGGCTTCCCCCTAGGCGGCCCGAACCGTCGCCTGCGTGTGGATTTCGCTAAAGCTGAGGAGACGAGGGCGTACCCTCAACAATACCAGCCACCGTTGCTCCCGCCTCCGCATTACGATCTTCTAGCTGAAGGTTACGGGCGCCATCACAGCCTGGAGCGGGAGCTGAGAGCGAGGGCTCGCTCGCCCTCGCACCCCCTGTTCgcagagcgagaaagagagcgCCTTTCGGACCGGGACTGGAGCCCGCCGAAAGGAACGGAGCGGAGGGCCAACGCGGAGGCATTTGGGCGGGTCAGGCAGCGCAGCCGCAGTCGCAGCCGCAGCAGAGAGCGCTGGGTCAAGGAGCGAGAGCTGGAACGCGGGAAGAACTGGGAGGAGCGGCGCAAGCGAAGAAGCATCAGTCCCATCGACCGTCCTGCCGAGGAGCGCGGGAGGTCAAAGCTTCGGGGCGGAGCACCGTCTACTCCCGAAGACAGCCCTGATAGGGGCCGCGGCCGTCTCCCGGACTCCACCTCAGAACCTCTCGACCACACCCCCGACATCAGCAGACACTCCAGCGACGAGCGTCCCGCGCAGGACGAGCCGTCGCACCCGCGGAAGGAGGAGCGCGATCGCAATCACCGCAAAAGCGAGAGCGACCCCGACTCGCAGACCGACAAGTCCAAAACAGACTCCAAAAAGCCCGGCACGCTCTCCGAATACGCCCAGACCTTGAGTCGCGTGTGGCACGGTTCCCTCGTGCTGAAAAACAGCTGCTTCCCCGCAAACATGCACATGCTCGAGGGGGGCGTGAACTTTCTCCACGCCCTCATGAAGGACAACCAGGCAGGCGGCGCCAAGATCGCGCAGCTCAAAATCGCTCAGCGGCTGAGGTTGGATCAGCCCAAACTGGACGAGGTGACGCGGCGCATCAAGCTAGGCAGCCCGGACGGCTACGCTGTCCTCCTCGCCGTCCAGGGGCCCATGGACCGCGACGCCCCTCCCCCAGAACCGGGCCTCCAGCAGCGCCTTCTCCGCAACCTGGTGACGTACCTCAGGAACAAGCAGGCAGCGGGGGTCATCGGCTTGCCCCTCGGCGGCCCCAAAGACAGAGAAATGGGGGGCATGTTGTACGCCTTTCCTCCGTGTGACTTCTCGCAGCAGTACCTCCAGGCTGCTCTGAAAACTCTTGGTAAACTCGAGGAGGACCACCTGGTCATCGTGGTCGTTAGAGACTCACCTTGACACTTCAATTCCGACTCTAAAACGTTCCACACAGATTCGATGCCTTTTATGATTTTAGGACGGATGTACCTTTTCACTTTAATACTCCCACACATCCCCCGGAGAAGTTGTTTTATAAGCTTGCAAATGGGTTTTAAATTTCTCTCAGCAGTGTTCGAAATTTTCCgtttaattctatttaaaaacgttttatataaTTGCATGCACAAGCAGTTTGACTGAAGCCCCGGTGGTTTGTTATAACGGGCGTTAATCATACAGGACTTCCTTTCTAACTCAAATTTGTTCGCGAATCCATTCGTCGTCGCTCCGTCTCATTCGATGTGCTCATTAAGGTCTGTCGACGGAAATTCGAGCGTGATAATTTGTTAGTGGCTTCTTACTCCGTAACGGTTCTTCCCTCCGATATCACATCCGTTACGCAAACCCTAGCTTCTCTGAAATAAACCCGTACTTGACGTGGCAGTATGTTCAGTTCAGGTGAGGCGTTAACCGGCGGCAACTACCTCTTTGACCATGTAACACATCAGGTATGCTTGACAAAATGAAGTCAGTCTTCGAGCCCACTGCGTTTTTATTGCGTTTTGTTACAAATATGCACCCGCAGCACTAACAGAAAGGTCACGTGACCACACCAGTACTGTAACACTAATGTTTGTACGTGTTACGACACTACGGTTTaagctgtttgtttgtacaCAGGAATGTCTTCTCAAGCCTTGGCTGTTTTTCAACTGCCCTCCACCGAATGACTATTTGCCGAGTCATTGAGCCAACGCGTTTTAAAACAAGTGCTACTCTAAAATGTCCAGTGATTTGAAAGTCATGATAATGTATGAAACAGAAACGAGTGTTATTTTCAggttttagttaacaatgaGGGTTAAAAAGTCCTGCCAACACTACAACCCTTTGCACTGAACGGTCATTTTCCATTGTTGATTTTTAATCATGTTATCGTTTTGCCTTTCTTTTATCActcctttttttgtaatactattttttttttctagaaatctGTATGCAAAACATGTATggcgtataaaaaaaaagtaaacatttcatGTTCTTGTTTTTAA

Function

symbol description
rbm15b Predicted to enable mRNA binding activity. Predicted to be involved in regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in nucleus. Orthologous to human RBM15B (RNA binding motif protein 15B).

NR:

description
PREDICTED: putative RNA-binding protein 15B

GO: NA

KEGG:

id description
K13190 RBM15; RNA-binding protein 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223197.1 True 4028 mRNA 0.55 1 16752903 16756930

Neighbor

gene id symbol gene type direction distance location
manf manf,LOC107677041,LOC107691893,LOC107592842,LOC107750980,LOC107567190,LOC107708486 coding upstream 149 16750713 ~ 16752754 (+)
grip2b LOC107719945,LOC108436697,LOC107720331 coding upstream 275292 16382185 ~ 16477611 (+)
sec13 sec13,LOC107719942,LOC107557974,LOC107691189,LOC107657312 coding upstream 415785 16329725 ~ 16337118 (+)
LOC122328055 NA coding upstream 508361 16241163 ~ 16244542 (+)
LOC122327679 NA coding upstream 515882 16233607 ~ 16237021 (+)
dag1 dag1,LOC107592827,LOC107757307,LOC107691879,LOC107564392,LOC107708488,LOC107678152 coding downstream 283732 17040662 ~ 17069967 (+)
srfa srfa,LOC107568266,LOC107679061,LOC107720394,LOC107551382,LOC107706117 coding downstream 596887 17353817 ~ 17369897 (+)
rnf13 rnf13,LOC107551383,LOC107568264,LOC106613488 coding downstream 614225 17371155 ~ 17388079 (+)
rubcn LOC107720396,LOC107732676,LOC107701215,LOC107568258,LOC107679062,LOC107551360 coding downstream 665188 17422118 ~ 17438914 (+)
dynlt2b tctex1d2,LOC107701222,LOC107732663,LOC107744197,LOC107551376,LOC107565470 coding downstream 733814 17490744 ~ 17492655 (+)
G153504 NA non-coding upstream 186233 16566052 ~ 16566670 (+)
G153501 NA non-coding upstream 196293 16554933 ~ 16556610 (+)
LOC122328065 NA non-coding upstream 207553 16535019 ~ 16545350 (+)
LOC122327176 NA non-coding upstream 226095 16522630 ~ 16526808 (+)
G153434 NA non-coding upstream 250799 16501754 ~ 16502104 (+)
G153568 NA non-coding downstream 865 16757795 ~ 16758127 (+)
G153569 NA non-coding downstream 2215 16759145 ~ 16759580 (+)
G153583 NA non-coding downstream 48252 16805182 ~ 16805608 (+)
G153610 NA non-coding downstream 315584 17072514 ~ 17072936 (+)
G153645 NA non-coding downstream 662794 17419724 ~ 17419944 (+)
dock3 dock3,LOC107592830,LOC107691882,LOC107567192 other upstream 2975 16600630 ~ 16749928 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other upstream 253490 16493702 ~ 16499413 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other upstream 366727 16317387 ~ 16386176 (+)
LOC122327131 NA other upstream 581274 16163383 ~ 16171629 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other upstream 674008 16077581 ~ 16078895 (+)
tsc22d2 tsc22d2,LOC107732673,LOC107679060,LOC107701225,LOC107568259,LOC107720398,LOC107551385 other downstream 642375 17399305 ~ 17419244 (+)
G153741 LOC107661227 other downstream 1169421 17926351 ~ 17927244 (+)

Expression


Co-expression Network