manf (manf,LOC107677041,LOC107691893,LOC107592842,LOC107750980,LOC107567190,LOC107708486)


Basic Information

Item Value
gene id manf
gene name manf,LOC107677041,LOC107691893,LOC107592842,LOC107750980,LOC107567190,LOC107708486
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 16750713 ~ 16752754 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223198.1
TGGGCGGGCCCTTGCGATAGGAAGCGCTGTTGAATCGTTCCGTTGCGTGTTGTCGAGCCGGTATCTTTAATGATCGCTCGAAACCAGGTTTATCGCTTTTTTCGTAGCGCATTTAAGTAGTTAGACGCGTGTGTTTGGTTTTAGGATGATATATTTAAGCGGGCTTTCCGTGGCCCTGGCCCTGGCTCTGGTGCCGAGCTGCACAGAAGCTCTGAAGGATGGAGAGTGTGAAGTCTGTGTGGGTTTCCTGCAGCGCTTTCACCAGACGCTTCAAGACAACGACGTCCAGTTCAGCAGCGACTCCATCGAAAAGGCCCTGCTGAAGTCTTGCAAGGAGGCCAAAGGAAAAGAAAACCGATTTtgttaTTATATAGGGGCAACAAGCGACGCAGCGACAAAAATAATCAATGAAGTTTCCAAACCGATGAGTTACCATGTGCCGGTGGAAAAGATCTGTGAAAAGCTCAAAAAGAAGGACAGTCAAATCTGTGAACTCAAATACGATAAACAAGTGGACTTGAGCTCCGTCGACCTGAAGAAGCTGAAAGTGAAAGACCTGAAGAAGATTTTGGAGGAATGGGGCGAGTCCTGCAAAGGCTGCGTGGAGAAGTCCGACTTCATCCGTAAGATCAACGAGCTGATGCCCAGGTACGCTCCGAGCGCGGCCAGGGCACGGACAGATCTGTGAGGCCCCCGGGAGCCGCGGGGCCGAAGGACGATGAGCGAGCGCCTGACCGCGGGGCGTTTTAACACGTGCTCCGGGAGAACGTCAAGAAACCCAACGCACTTCCGTGAAAACACCACCTTTCGTTTATAAGTTGCCATGTGTTCGTTCCGACTAACGTCCAGCACGCCTCCTGACGCTGCGGGAAACCTGTCTGACACACTTGAGTTTGATTTTACTTTCTGTTCTTTATCTTTTGAGGGCGTAGACTTTCCTAGTTGGCACCTTATATGAAATCTTCAAGATGCGCGGGTCGGTTTGAGTGGActttgttgtaaaatgtttaatacagtTATACtgtctttttcattaaaagaacaaaagaa

Function

symbol description
manf Predicted to enable growth factor activity. Acts upstream of or within dopaminergic neuron differentiation. Predicted to be located in extracellular region. Predicted to be active in endoplasmic reticulum and extracellular space. Is expressed in several structures, including axis; brain; hatching gland; pleuroperitoneal region; and sensory system. Human ortholog(s) of this gene implicated in Parkinsonism; breast cancer; carcinoma (multiple); and pancreatic cancer. Orthologous to human MANF (mesencephalic astrocyte derived neurotrophic factor).

NR:

description
mesencephalic astrocyte-derived neurotrophic factor isoform X1

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process

KEGG:

id description
K22556 MANF, ARMET; mesencephalic astrocyte-derived neurotrophic factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223198.1 True 1050 mRNA 0.49 4 16750713 16752754

Neighbor

gene id symbol gene type direction distance location
grip2b LOC107719945,LOC108436697,LOC107720331 coding upstream 273102 16382185 ~ 16477611 (+)
sec13 sec13,LOC107719942,LOC107557974,LOC107691189,LOC107657312 coding upstream 413595 16329725 ~ 16337118 (+)
LOC122328055 NA coding upstream 506171 16241163 ~ 16244542 (+)
LOC122327679 NA coding upstream 513692 16233607 ~ 16237021 (+)
LOC122327230 LOC107574244,LOC106946732 coding upstream 595162 16153142 ~ 16155551 (+)
rbm15b rbm15b,LOC107592829,LOC107750977,LOC107708489,LOC107567194,LOC107691881,LOC107677039 coding downstream 149 16752903 ~ 16756930 (+)
dag1 dag1,LOC107592827,LOC107757307,LOC107691879,LOC107564392,LOC107708488,LOC107678152 coding downstream 287908 17040662 ~ 17069967 (+)
srfa srfa,LOC107568266,LOC107679061,LOC107720394,LOC107551382,LOC107706117 coding downstream 601063 17353817 ~ 17369897 (+)
rnf13 rnf13,LOC107551383,LOC107568264,LOC106613488 coding downstream 618401 17371155 ~ 17388079 (+)
rubcn LOC107720396,LOC107732676,LOC107701215,LOC107568258,LOC107679062,LOC107551360 coding downstream 669364 17422118 ~ 17438914 (+)
G153504 NA non-coding upstream 184043 16566052 ~ 16566670 (+)
G153501 NA non-coding upstream 194103 16554933 ~ 16556610 (+)
LOC122328065 NA non-coding upstream 205363 16535019 ~ 16545350 (+)
LOC122327176 NA non-coding upstream 223905 16522630 ~ 16526808 (+)
G153434 NA non-coding upstream 248609 16501754 ~ 16502104 (+)
G153568 NA non-coding downstream 5041 16757795 ~ 16758127 (+)
G153569 NA non-coding downstream 6391 16759145 ~ 16759580 (+)
G153583 NA non-coding downstream 52428 16805182 ~ 16805608 (+)
G153610 NA non-coding downstream 319760 17072514 ~ 17072936 (+)
G153645 NA non-coding downstream 666970 17419724 ~ 17419944 (+)
dock3 dock3,LOC107592830,LOC107691882,LOC107567192 other upstream 785 16600630 ~ 16749928 (+)
G153432 slc6a6b,LOC107567309,LOC107676359,LOC107719944,LOC107562730 other upstream 251300 16493702 ~ 16499413 (+)
rpl32 rpl32,LOC107691188,LOC107719943,LOC107720357 other upstream 364537 16317387 ~ 16386176 (+)
LOC122327131 NA other upstream 579084 16163383 ~ 16171629 (+)
LOC122327825 LOC107565915,LOC107680281,LOC107709523,LOC107680280,LOC107565908,LOC107706842 other upstream 671818 16077581 ~ 16078895 (+)
tsc22d2 tsc22d2,LOC107732673,LOC107679060,LOC107701225,LOC107568259,LOC107720398,LOC107551385 other downstream 646551 17399305 ~ 17419244 (+)
G153741 LOC107661227 other downstream 1173597 17926351 ~ 17927244 (+)

Expression


Co-expression Network