LOC122327695 (ncf4,LOC107704554,LOC107667893,LOC107559542)


Basic Information

Item Value
gene id LOC122327695
gene name ncf4,LOC107704554,LOC107667893,LOC107559542
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 13517128 ~ 13539026 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223201.1
catttcaaacGTACCATTGTTCTCCGTCCTGTTGTTTCTGAACGCAATAACGGCACGTTAGTTTGTGAAATCCTCGTGCTAAAGTCCCCCACCGGCACTTTCAGTTCCCCTTTAGCTTACGTGCAGCTGTAAACCCGCCTCAGAAAACCCAACAGCTTCACTTCCACTTTATTCAACTaatcactctctctgtctctgtctgtgagCGTCTGAAGAGCTTCGAATCCCGCGTCACCCAGCATGTCTCTCCCGCAACAGCTGCGCGACGAAAGTGATTTCGATCAGCTTCCAGACAACATTCCAGTCACTGCAACCATTGCCGATATTGAGGAAAAGAAAGGTTTCATTGTTTACTATAGGTTCGTAATTGAGGTGAAGACCAAAGGCAACAGTAAATACTTGATCTACAGAAGGTATCGTCAGTTCTTTGCCCTGCACCAGAGTTTGGAGCTTAAGTACTCAGCTGAAGCCCAGCCGGGATACTACACCTGCCAACTACCAACCCTGCCAGGTAAGGTGTTTATGGGGAACAAAAAAGAGATTGCAGAGAGCAGAATCCCAGAGCTCAACAATTACATGAAGAGGTTGCTTTGCCTGCCTACCTGGGTACTCTTGGATGATCTGATACGGATGTTTTTCTATCAGACCGAGTCGGACAGCCAACAGGTCCCCCGGGCCCTGCGCCGCCTGCGGCCCCCCACACGCAGAGTAAAAACTGTAAAGCCCAAAACGGACCTTCTCTCCGCACCCAGAGCAGAGgcGGTGTTTGACTTCAGTGGCAGCGGACGCCTGGAGCTCAGTCTGAAGGCTGGAGATGTGATCTTCCTCCTGCGAAGAGTCAACGCAGACTGGCTcgagGGCACAGTGAGAGACAAAACTGGAATCTTTCCCGAGTCGTTCGTGAATATTATTAAACCTCTTCCCGAGAGTGACTCTGATGAAGAGGGCGGAGCTTCCAAAAGCGGAAAACATACTCCGAGTTCATACAGCTGCCTGCGCTGCTATCTGCTGCAGCCAGAGGGCATCGACACaagGGACATTTGTGTTGAGGAAGATCTCTCCATTCAGCCATCTTACGAAGATCTGCTTTCCAGAATGAGGGATGTCTTTCAAGAGAAAGATATTGCTTTGAACTACCGGGACCCTGAGGGCGATCTGATACGGATATTAGACGATGAAGACGTCACCCTCATGGTGCAAGAGAGCAAACAGACGGGGTCAAAGGTTAAACGGCCCGTGAATCAGTTTCCCTGGGAGCTGCTGGTCACCCAGGCCAAAGATCTGACCGTCTACAGCACCGACTATTGAAACGAGCCGACGACGCAAACCGTTGCACAGAATTTCTTAGTTTACGTGGTTTTCAAATTGAAAACTGTTCATGTAGGGTTTACCCAATAATATGACAGATTTTATTGCGTTTACTCAACCTCGAATCATTTGTGGCTTTTGAAGCAGAATCGTTTGAACCAgtctaaatgattcatttatgaatCAGATTGAATTCACTGGTAATCACTGAAAATTAACAGCttaatcaacaaaaaaatttaatgactTTAGATCAgtgttattattaactattattattttttatatacagttcattaagattttt

Function

symbol description
ncf4 Predicted to enable superoxide-generating NADPH oxidase activator activity. Predicted to be involved in superoxide anion generation. Predicted to act upstream of or within phagocytosis and respiratory burst. Predicted to be part of NADPH oxidase complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal recessive chronic granulomatous disease cytochrome b-positive type III and rheumatoid arthritis. Orthologous to human NCF4 (neutrophil cytosolic factor 4).

NR:

description
PREDICTED: neutrophil cytosol factor 4-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0007154 cell communication biological_process
GO:0005737 cytoplasm cellular_component
GO:0016175 superoxide-generating NAD(P)H oxidase activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
K08012 NCF4, P40PHOX; neutrophil cytosolic factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223201.1 True 1615 mRNA 0.47 10 13517128 13539026

Neighbor

gene id symbol gene type direction distance location
pla2g6 pla2g6,LOC107667889,LOC107704553,LOC107602675 coding upstream 19903 13480546 ~ 13497225 (+)
tp53bp2b LOC107717669,LOC107704550,LOC107667887,LOC107602677 coding upstream 57496 13438187 ~ 13459632 (+)
abi3bpb abi3bpb,LOC107566041,LOC107717674,LOC107704546,LOC107720343,LOC108436625 coding upstream 214372 13278371 ~ 13302756 (+)
senp7b LOC107717676,LOC107704544,LOC107704674,LOC107566043 coding upstream 290290 13202689 ~ 13226838 (+)
LOC122327210 NA coding upstream 442215 13063303 ~ 13074913 (+)
LOC122327135 LOC107704540,LOC107717663 coding downstream 2164 13541190 ~ 13548429 (+)
arhgap19 arhgap19,LOC107679052,LOC107714154,LOC107706113,LOC107657488,LOC107588461,LOC107551371,LOC107551358 coding downstream 539924 14078950 ~ 14088700 (+)
slit1b slit1b,LOC107588453,LOC107714155,LOC107551370,LOC107657487,LOC107679047 coding downstream 551524 14090550 ~ 14130334 (+)
si:ch211-126j24.1 si:ch211-126j24.1,LOC107550685,LOC107697062,LOC107588448 coding downstream 663102 14202128 ~ 14246917 (+)
klc4 klc4,LOC107753482,LOC107697060,LOC107550686,LOC102783141,LOC102306811,LOC102210354 coding downstream 709470 14248496 ~ 14270825 (+)
G152571 LOC107717667,LOC107704552,LOC107602676 non-coding upstream 40620 13472195 ~ 13476508 (+)
G152569 LOC107559555,LOC107667899,LOC107704551,LOC107720376,LOC107717670 non-coding upstream 48885 13465360 ~ 13468243 (+)
G152557 col8a1b,col8a1,LOC107717673,LOC107602679,LOC107704548,LOC107667898,LOC107571642,LOC107720377,LOC108436628 non-coding upstream 134555 13379693 ~ 13382573 (+)
G152526 LOC107667894,LOC107571641,LOC107720378 non-coding upstream 161460 13354567 ~ 13355668 (+)
G152521 NA non-coding upstream 206767 13309841 ~ 13310361 (+)
G152578 NA non-coding downstream 1231 13540257 ~ 13540795 (+)
G152585 NA non-coding downstream 44759 13583785 ~ 13689603 (+)
LOC122327079 NA non-coding downstream 112475 13651501 ~ 13653037 (+)
LOC122328069 LOC107602652,LOC107717663,LOC107704540 non-coding downstream 114039 13653065 ~ 13653510 (+)
G152644 NA non-coding downstream 263808 13802834 ~ 13803281 (+)
baiap2l2b baiap2l2b,LOC107717666,LOC107704557,LOC107602661,LOC107559544,LOC107720338 other upstream 7876 13404842 ~ 13509252 (+)
G152565 NA other upstream 98721 13417464 ~ 13418407 (+)
G152558 col8a1b,LOC107717673,LOC107720377,LOC107704548,LOC107667898,LOC107602679,LOC107571642 other upstream 133351 13383153 ~ 13383777 (+)
LOC122327212 NA other upstream 336853 13176427 ~ 13180275 (+)
LOC122327162 NA other upstream 404395 13107506 ~ 13112733 (+)
G152584 LOC107691164,LOC107602672,LOC107720370,LOC107559552,LOC107667897,LOC107736246,LOC107717652 other downstream 36712 13575738 ~ 13681947 (+)
LOC122327219 cunh10orf76,zgc:63733,LOC107551381,LOC107714152,LOC107588454,LOC107657489 other downstream 501695 14040721 ~ 14058580 (+)
kcnip2 kcnip2,LOC107714153,LOC107679051,LOC107551372 other downstream 532450 14071476 ~ 14078380 (+)
ptk7a ptk7a,LOC107702250,LOC107732247,LOC107588446,LOC107550662,LOC107697061 other downstream 744866 14283892 ~ 14313136 (+)
G152767 cp,LOC107572087,LOC107732248 other downstream 919123 14458149 ~ 14462660 (+)

Expression


Co-expression Network