vcam1b (LOC107669833,LOC107715100,LOC107592710)


Basic Information

Item Value
gene id vcam1b
gene name LOC107669833,LOC107715100,LOC107592710
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 8673506 ~ 8681447 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223204.1
CCGATCCCTTCCCCTTCTCCTATAAATCAGATCCAGAgctgaatgaaagaaagaaagcggaTTAACTCAGTTCTGTTCACTTGGAGCTCTTTGATTGTTCTTCAGGACAGCATGGATCCAGCTTTACTCTTGACTCTGCTTCTGCCGGTTGCCGTTGTTTCCTCTTCACTGGACCTGCCGCCCCAAGTTCTGTTCAAAGTGGGCGAGAGGAGAGAACTGACCTGCAACATGTCATCTTGCCCGGAGAAGGTGAAGTTTGTTTGGACCCCATTAGAAGACAAACCGATATTCGCTACTATCGATTCACGGGACAAAGCATCTGTGATGGTCTTCGACAGTGTGAGGACGAATCACGAAAACACCATACTGTGCAAAGCAACCTGTGGGAAACAGACAAAACAGGCCAGAACAACTATTAAAGTTTATTCTTTTCCAAGTAACCCGGTTATATCTGGATATGATAGCTTGAAAATGGGTGAGGAAAACACCTTGCGCTGTGAAGTATCTTCAGTATACCCTTCGGAGTTCCTTACAGTGGAGTGGCAATACGGAGACCAAGTTCTCAAGAATTACGAGGAACATTCCAAAACAGATTCATTTCCCTTTAAATTCACACCTTCTAATGAGGATGATGGGAAGGCATTAACGTGCAGAGCATCACTGGTTATGGATGGTATACCAGCTGATGAGATGACCAAGGAAACCTCTGTACACACAACAGTTCTCACTGCACCGCATAATGTTAAAGTATCTGGAGCGACCGCCGTCCTGCTGGGATCCAGTTTAACTTTGACCTGTGAGTCCGAGGGCAAACCGAAGCCTGCATTTACATGGATGGTTCTTAAACCAGATGGCCGGTCTGTGGAAATGGGAAAGCATCGACAGCTCTTCGTACAAGACGTGTCCTTAGAGGATGCTGGTACTTACCAGTGTGACGTTAGCAATGATTTGGGAAGTCAAAATGTCAGCGTTTCAGTAGTCGTTCAAGCACCTCCTATGGATACCTTCATTGTAGCAAGTCCACAATCCACTGTGAAGGAAGGAGACTCCGTGAGCATTTCCTGCAATTCCAGCATTGTTCCAGTGACACAACTGGTGCTCAGCAGGAGGGTTAATGGTGTAAAAACTGAGCTAAAGTCTAGTGAAGGGGCAGAAACATCAGTTACCTTCAATTCCGTCAAGCTGACTGACTCtggcatgtttgtgtgtgaggcTTTCAATGATTATGGCAGTCAGGAGACCATTCTCAATCTAACTGTTGAAGCTTATTTGCTAGAAGTGGCTCTTCAACCGGAAGGAGAGGTTGTGTTGGAGAAAGGCTCAGGCCTGATCCTCTCCTGTCAGGCTTCAGGTTGTCCTCAACCCAAGTTCTCCTGGAAGAGTCTTTCAGATATGCCAATCCTCAGGCAAGTTAAGACAGATGGCTTCCAGTCCCAGCTGGTTTTCGATCAAGTAGAGTTGGAAGATGAGGGAACTTACCTTTGTGAGGTCACATGTGGCTCAGTCAACAAGTCCAAAGAGACAGAAGTAAAGGTTTTTTCATTTCCAAAAAGTCCTGTTGTGAAAATGTCTGGATCTTCTCTGGTGGGAGAGATGATGAAATTGACCTGCACTGCTCTGGACGTTTTCCCAGCCAACCTTTTCCAAATTCTGTGGATGGACGGAGAGCGAGAAATGCATTCAGAAACTGGGTCATTTTCAAGTGGTAAAATAAATCTGACTTCAGTGTATTCTTACCGGTTAAAGCCCGAGGATCAGGACAAACGCATCACCTGCAAAGTTTTTCTGGAAATGCGTGGTGTGCCAACTACTCAAGCAGTAAAGACGGCATCTGCTACACTGTCCGTTCATTATCCCCCGAGAGCAACCAGGATTACTGTGAGCCCACAGATGGAGTTAAAGGAAGGAGAATCTGTGACCATTTCATGCCTTTCCAACAGCTTTCCAGTGGGGCATACAGTGCTGAGCAGGGTGACGGATGGCATACAAACAAAGCTTATGACCAGTCATGGGCTTGAAACAGTGTTAACCATCTTTGGGGTTGAGCTGGATGACTCTGGCGTCTATGTTTGTGAAACTTCCAATATGTATGGAAGCCACAACGATAGTGTGGAGATTACAGTGAAAGCACCACCCAGGAATACAACGGTGGAGATCTTTCCATCCACGGATGTTCAGGAGGGGCAGAATATCACCATCTGTTGTCGCTCCGTGAGCTTCCCTCCTGCTACGGTGGTCCTCAGCAAGCtggatggagaaaaaaatgtctACTCTCTTGATGGTGTATTCCTGCTGATCAACCTCACTCCTAACGACACAGGCCTTTATCAGATCAACGTCACCAATGACCTGGGTTACGAGACTGAGCTTTTCAATATCAGTGTGATGGAGAAAAGAGTCAACCCTCCATTAGACTGGAATGACTTTCTAATGCCCGCGATTTGCCTGGGAGTTGCTTCTGCTCTGCTCGGTGTTGTGGTGTACGTGTGGAGAGCTAGGAAGAAAGGATCATACGACCTTACAAAGTGCAATCCGAGCACTGTGTAGACTGTGTTTACATTCCATGGACTGTTTTGGAAGCAGCTAAGCTCGGCTGAACTGTCTTGTCAGGGCCCAGGGCCACCCTAAAGCGAGAACTGCAGGTGACCGAATTCATCACCTTGAACATCAGGTGCCAATAACCCAGCTTGATGGGAAACTGCATTCTCCGCAGTCAGAGACAATCAATGTGACAGTGATTTGCCATGCATCCCATGAGAAAAGAAATCGAACCGGAGCGGTTTCTTTGTGGTCTTTGTGTTGGGACGTGTCAGCTGTTTTTGAGACCACCTTGTCTGCACTTAAAGTGTGAAGTGTGAAAGTCTAAGCTTGAAATACAAAGGAAAAACACTGTGAATCGtagctttaaacattttatcacTACATGAAAATAACCACcaagttttaattgttttgtacattttagatGTCCATAAGAGTCTGATGTTCCGAAGTAGATATTTTGTcctaaaatttttataaaatgctttcaatttaatatttattaaacttgCAGCTTTCTGTCATTTGATCCCGGGGAATATTTTATGGGAAAATCCAAGGAAATTTCACTATTGCAGGAATCCACAGCGTCTGTTAAAGCTTCACTTTCtcttttgatatttgatatcTTTTTCTCTCATTCAATTTCTGTTTAGCACAATAAAGATGGGATGATTTGGAAAGGCATATTCACACACCAAGCCATTTCTGAAATTCCAACAAGACGGGAACAAGCTGAAACGAAACAGGAACTAGCACACCTTCCAAAAATAAACCACTCCACATTTGTGCCTCCATCCTTTCAAGTCCAATCAGACCTTCTGAATAACACCCCCATCTAGTTCCTATTTTTTTGTCCTGCAAATTAAGACCAAACGATTTAAAATCGAGTTCTTTGCTCCTTTTTTAGTGTcttatattgattttttttttgtcagggtTGCTATAAAAggctgttgccatggtgaccaTCCAGAAGCAATGGGAAAGGGGGGTGGGTCGTGTTTTCATGTTCTACAGGGAAAAGGAGAAGCAAAGGTGCGAATGAAACAGTGTTCTCTCAGAAAGATGGAGGGCCACTCGCCCgcttctttttttaacctctTCATATTAAATTTAGGACAATCTTTTTGAAGAACCAGCAGCAAGTAATGTTCTTACTTCAGAAACATTGCAGTATTTTATCATACTTATACTTGTAATACTAATATTGGTCTTTGTTTTGACACTATACACAATACATATGTTTCCAAAGAGGCTACTGTTTGATTTAATGTGAGTAATAAAAGTGACGAACGACTGAAA
>XM_043223206.1
CCGATCCCTTCCCCTTCTCCTATAAATCAGATCCAGAgctgaatgaaagaaagaaagcggaTTAACTCAGTTCTGTTCACTTGGAGCTCTTTGATTGTTCTTCAGGACAGCATGGATCCAGCTTTACTCTTGACTCTGCTTCTGCCGGTTGCCGTTGTTTCCTCTTCACTGGACCTGCCGCCCCAAGTTCTGTTCAAAGTGGGCGAGAGGAGAGAACTGACCTGCAACATGTCATCTTGCCCGGAGAAGGTGAAGTTTGTTTGGACCCCATTAGAAGACAAACCGATATTCGCTACTATCGATTCACGGGACAAAGCATCTGTGATGGTCTTCGACAGTGTGAGGACGAATCACGAAAACACCATACTGTGCAAAGCAACCTGTGGGAAACAGACAAAACAGGCCAGAACAACTATTAAAGTTTATTCTTTTCCAAGTAACCCGGTTATATCTGGATATGATAGCTTGAAAATGGGTGAGGAAAACACCTTGCGCTGTGAAGTATCTTCAGTATACCCTTCGGAGTTCCTTACAGTGGAGTGGCAATACGGAGACCAAGTTCTCAAGAATTACGAGGAACATTCCAAAACAGATTCATTTCCCTTTAAATTCACACCTTCTAATGAGGATGATGGGAAGGCATTAACGTGCAGAGCATCACTGGTTATGGATGGTATACCAGCTGATGAGATGACCAAGGAAACCTCTGTACACACAACAGTTCTCACTGCACCGCATAATGTTAAAGTATCTGGAGCGACCGCCGTCCTGCTGGGATCCAGTTTAACTTTGACCTGTGAGTCCGAGGGCAAACCGAAGCCTGCATTTACATGGATGGTTCTTAAACCAGATGGCCGGTCTGTGGAAATGGGAAAGCATCGACAGCTCTTCGTACAAGACGTGTCCTTAGAGGATGCTGGTACTTACCAGTGTGACGTTAGCAATGATTTGGGAAGTCAAAATGTCAGCGTTTCAGTAGTCGTTCAAGCACCTCCTATGGATACCTTCATTGTAGCAAGTCCACAATCCACTGTGAAGGAAGGAGACTCCGTGAGCATTTCCTGCAATTCCAGCATTGTTCCAGTGACACAACTGGTGCTCAGCAGGAGGGTTAATGGTGTAAAAACTGAGCTAAAGTCTAGTGAAGGGGCAGAAACATCAGTTACCTTCAATTCCGTCAAGCTGACTGACTCtggcatgtttgtgtgtgaggcTTTCAATGATTATGGCAGTCAGGAGACCATTCTCAATCTAACTGTTGAAGCTTATTTGCTAGAAGTGGCTCTTCAACCGGAAGGAGAGGTTGTGTTGGAGAAAGGCTCAGGCCTGATCCTCTCCTGTCAGGCTTCAGGTTGTCCTCAACCCAAGTTCTCCTGGAAGAGTCTTTCAGATATGCCAATCCTCAGGCAAGTTAAGACAGATGGCTTCCAGTCCCAGCTGGTTTTCGATCAAGTAGAGTTGGAAGATGAGGGAACTTACCTTTGTGAGGTCACATGTGGCTCAGTCAACAAGTCCAAAGAGACAGAAGTAAAGGTTTTTTCATTTCCAAAAAGTCCTGTTGTGAAAATGTCTGGATCTTCTCTGGTGGGAGAGATGATGAAATTGACCTGCACTGCTCTGGACGTTTTCCCAGCCAACCTTTTCCAAATTCTGTGGATGGACGGAGAGCGAGAAATGCATTCAGAAACTGGGTCATTTTCAAGTGGTAAAATAAATCTGACTTCAGTGTATTCTTACCGGTTAAAGCCCGAGGATCAGGACAAACGCATCACCTGCAAAGTTTTTCTGGAAATGCGTGGTGTGCCAACTACTCAAGCAGTAAAGACGGCATCTGCTACACTGTCCGTTCATTATCCCCCGAGAGCAACCAGGATTACTGTGAGCCCACAGATGGAGTTAAAGGAAGGAGAATCTGTGACCATTTCATGCCTTTCCAACAGCTTTCCAGTGGGGCATACAGTGCTGAGCAGGGTGACGGATGGCATACAAACAAAGCTTATGACCAGTCATGGGCTTGAAACAGTGTTAACCATCTTTGGGGTTGAGCTGGATGACTCTGGCGTCTATGTTTGTGAAACTTCCAATATGTATGGAAGCCACAACGATAGTGTGGAGATTACAGTGAAAGCACCACCCAGGAATACAACGGTGGAGATCTTTCCATCCACGGATGTTCAGGAGGGGCAGAATATCACCATCTGTTGTCGCTCCGTGAGCTTCCCTCCTGCTACGGTGGTCCTCAGCAAGCtggatggagaaaaaaatgtctACTCTCTTGATGGTGTATTCCTGCTGATCAACCTCACTCCTAACGACACAGGCCTTTATCAGATCAACGTCACCAATGACCTGGGTTACGAGACTGAGCTTTTCAATATCAGTGTGATGGCACAATAAAGATGGGATGATTTGGAAAGGCATATTCACACACCAAGCCATTTCTGAAATTCCAACAAGACGGGAACAAGCTGAAACGAAACAGGAACTAGCACACCTTCCAAAAATAAACCACTCCACATTTGTGCCTCCATCCTTTCAAGTCCAATCAGACCTTCTGAATAACACCCCCATCTAGTTCCTATTTTTTTGTCCTGCAAATTAAGACCAAACGATTTAAAATCGAGTTCTTTGCTCCTTTTTTAGTGTcttatattgattttttttttgtcagggtTGCTATAAAAggctgttgccatggtgaccaTCCAGAAGCAATGGGAAAGGGGGGTGGGTCGTGTTTTCATGTTCTACAGGGAAAAGGAGAAGCAAAGGTGCGAATGAAACAGTGTTCTCTCAGAAAGATGGAGGGCCACTCGCCCgcttctttttttaacctctTCATATTAAATTTAGGACAATCTTTTTGAAGAACCAGCAGCAAGTAATGTTCTTACTTCAGAAACATTGCAGTATTTTATCATACTTATACTTGTAATACTAATATTGGTCTTTGTTTTGACACTATACACAATACATATGTTTCCAAAGAGGCTACTGTTTGATTTAATGTGAGTAATAAAAGTGACGAACGACTGAAA

Function

NR:

description
vascular cell adhesion protein 1-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06527 VCAM1, CD106; vascular cell adhesion molecule 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223204.1 True 3846 mRNA 0.44 10 8673506 8681447
XM_043223206.1 False 3038 mRNA 0.45 10 8673506 8681447

Neighbor

gene id symbol gene type direction distance location
slc30a7 slc30a7,LOC107588064 coding downstream 6784 8651809 ~ 8666722 (-)
s1pr1 s1pr1,LOC107715096,LOC107592715,LOC107669844,LOC107653630,LOC107588065 coding downstream 55889 8614242 ~ 8617617 (-)
eps15l1a eps15l1,eps15l1a,LOC107757482 coding downstream 104564 8546952 ~ 8568942 (-)
mrpl54 LOC107665512,LOC107588072,LOC107715089,LOC107561894,LOC107757478,LOC107683181 coding downstream 205074 8467114 ~ 8468432 (-)
malt2 malt2,LOC107561899,LOC107588074,LOC107653622,LOC107715088,LOC107757454 coding downstream 206509 8459294 ~ 8466997 (-)
gpr88 gpr88,LOC107715102,LOC107669805,LOC107592712,LOC107588121,LOC107653578 coding upstream 1558 8683005 ~ 8684494 (-)
cdc14ab cdc14ab,LOC107669826,LOC107715101,LOC107653633,LOC107588060,LOC107592738 coding upstream 5644 8687091 ~ 8725380 (-)
rtca rtca,LOC107715104,LOC107669846,LOC107653637 coding upstream 52711 8734158 ~ 8739243 (-)
trmt13 trmt13,LOC107588056,LOC107580953 coding upstream 70977 8752424 ~ 8757018 (-)
ttc39c ttc39c,LOC107653643,LOC107669847,LOC108429509,LOC106613856,LOC108270684 coding upstream 92418 8773865 ~ 8785783 (-)
G151029 NA non-coding downstream 174145 8499126 ~ 8499361 (-)
G151015 NA non-coding downstream 204254 8468471 ~ 8469252 (-)
G151016 LOC107715086 non-coding downstream 252766 8419634 ~ 8420740 (-)
G151020 NA non-coding downstream 260813 8412443 ~ 8412693 (-)
G151017 NA non-coding downstream 263377 8409316 ~ 8410129 (-)
G151086 NA non-coding upstream 125661 8807108 ~ 8808535 (-)
G151110 NA non-coding upstream 234454 8915901 ~ 8917143 (-)
G151111 NA non-coding upstream 267341 8948788 ~ 8949027 (-)
G151112 NA non-coding upstream 268169 8949616 ~ 8950059 (-)
G151122 NA non-coding upstream 463858 9145305 ~ 9147301 (-)
zbtb37 zbtb37,LOC107588063,LOC107757486,LOC107653628,LOC107669814,LOC107715095,LOC107592718,LOC107592717,LOC107669813,LOC107715094,LOC107757485,LOC107588062,LOC107653629 other downstream 60762 8600350 ~ 8612744 (-)
tmem264 tmem264,LOC107715063,LOC107757465,LOC107665501,LOC107653574,LOC107588123,LOC107561895 other downstream 380298 8286372 ~ 8293208 (-)
LOC122327776 LOC107751486,LOC107656680,LOC107565498,LOC107653539,LOC107715642,LOC107600957,LOC107751482 other downstream 1055108 7609856 ~ 7618398 (-)
LOC122327113 ahr1b,LOC107586968,LOC107687868,LOC107751479,LOC107653601,LOC107739322,LOC107600975,LOC108410580 other downstream 1617944 7020754 ~ 7055562 (-)
G150492 ahr1b,LOC107653601,LOC107600975,LOC107751479,LOC107687868,LOC107586968,LOC107739322 other downstream 1759948 6906000 ~ 6913558 (-)
G151107 tal1,LOC107669848 other upstream 202674 8884121 ~ 8886941 (-)
nfia nfia,LOC107592693,LOC107599440,LOC107653654 other upstream 332101 9013548 ~ 9171931 (-)
gpx4a gpx4a,LOC108429535 other upstream 817222 9498669 ~ 9503006 (-)
G151425 NA other upstream 1276364 9957811 ~ 9983147 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other upstream 1600575 10282022 ~ 10321663 (-)

Expression


Co-expression Network