ptpn4b (ptpn4b,LOC107586954,LOC107653584,LOC107593078)


Basic Information

Item Value
gene id ptpn4b
gene name ptpn4b,LOC107586954,LOC107653584,LOC107593078
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 6347651 ~ 6375093 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223229.1
CTGCACGTTGCAGCCGCAGCAGCCAGTAGCAGCAATACAGAGACATATGCGGGATTATAGAGCTAAACCCGGCCAGCAGCCACGGAGGAGATTGCAATTGCGTCTGAGGCTTGTATTTAATGCACCGCGCCCGAGAAGAAGCCAGGATCGCGTTCCCGTTTCGGAATTATCACTCGTTACTGTGCCAGAGGCCCCACGAATTGAATGTAATGTGAACATCTACAGCAATGTGGTGATTTTCCTGCAGATGAGCTGCCGTTTTGCCCTCTCCCCCCTCCTATTCTCCTTTCATCATAATTCAAGATCATCTTCAATTCACTGGACTCTCCTAGACCTGTATATGAAGaCGGAGTGGGGACCGTAATGACCGCACGCTTCCGGTTGCCTGCTGGCAGATCTTACGATGTGGGAGCGTTGGAGGAGGCCAGAGAGAGACAGCACGCGCAGGTGGATTGTAACGTTTTACTGCTGGACAACACAGTGCAGACCTTCAGAGCCAATAAGCAAGATCAGGGGCAGAACTTGTTGGACGTAGTGTATAAACACTTGGAGCTAACGGAGCGAGACTATTTTGGCCTTCAACTAGCAGACGACTCTTCTGACAGCCAGAGGTGGCTGGACCCAAACAAACCCATCAGAAAACAGCTCAAAAGGTCGTCTCCACATAATCTGAGGTTTAGAGTGAAGTTTTTTGTGAGTGACCCTAGCAAACTACAAGAAGAGTACACAAGGTATTTGTACTTTTTGCAACTGAAGCAGGATATTCTGAGCGGCAGACTTCCTTGCCCACAAAACACCGCGGTTCTTCTGGCTTCTTACGCCGTTCAGGCTGAGCTGGGGGACTACAGTCACTCCGAACATTTGCCCGGGTACCTCTCCGAGTACAGCTTCGTTCCCAGCCCTCCGCAGGACTTCGAGAAAGAGGTCGCCAAACTTCACCAAGAGCACAATGGACTCACACCAGCTCAGTCCGAGTTTAACTACTTGAATGCTGTGCGGACGCTGGAGCTGTACGGCGTGGAATTGCACTATGCTCGGGACCACTGTAACACAGAGATTTACATCGGAGTTTTGTCTGCCGGCATCTCCGTCTACAAGGACAGGGTACGAGTCAACCACTTTCCATGgttgaaaattgtaaaaatatcttttaaatcgAAACAGTTTTTTATACAACTAAGAAAAGAACTGACCGAGAACAGAGAGTCTCTGTTGGGTTTCAACATGATGAACTACAGAGCGTGCAAGAACCTCTGGAAGGCCTGCGTGGAGCATCACACGTTCTTCAGACTGGAGCGGCCCGTTCCTCCGGAGAGAAACCTCTTCCTGCATTACTTCACTCTCGGATCCAAGTTTCGCTACTGtgggaggaCAGAGGCGCAGTCCGTACAGTACGGAAAGGAAAGAGGCAACAAGAACAGAGTTTTTGCGAGGTCGCCGAGCAAGCCTCTGGTCCGAAGACTGATGAGCGGTTTGGACTGGGAGACCGTCAGCAGGAACTCTCTCTCGGACGACCGGCTGGAAACTCAGAGCCTGCCGAACCGTTCTCCACCAGACTCGCCGGATCACAGTAACTCGGTGTTCACCACAGACGGGGCGCGGGTCAGGCCTTCCTCCATTGGTCACCTAGTTGATCATGTGATCGATGACTCGCCATGCCAGACGTTCACCAATCACAAGTCTGCCTCCTCTACGCAGGCCAACAGCATCAGCCTGGACTCCACACCGTCTCCTGATGTGACGACAGACGAGCAGCCGCCGGCTCTGCCCCCGAAACAGTCCAGAAGAGATCCTCTGACCCACAACGGCAGATCCCAGTCCCAGCACGAGCTGGACGAGCACCTCAGCGAACTGTACAACGTACCTGCGGCGTCGGGAAAGAGCATGaatggAGCCGTGCCTCATGATAATcttgttttgattaaaatgagGCCGGATGAAAACGGACGATTTGGATTTGGATTtaagGGTGGCGCTGATCAGAGGATGCCCATCATAGTGTCCCGTGTGGCTCCGGGAACTCCGGCTGATATGTGTATGCCGCGCCTCAACGAGGGCGACCAGGTGGTGCTGATTAACGGTCGTGATATCTCAGAGCACACTCACGATGACGTGGTTATGCTAATTAAGGCCAGCTGTGAGGACCAATCGGGAGAGCTCATCCTGCTCGTCAGGCCCAATGCCATCTATGACGTGGATGAGGAGCAGGAGAAGCTGGATTTGGAGCCAGATTTCCAGTATATTCCAGAGACGTCCGGTCTGGAGCTGAGCCACTCGGAGGCCGATAGTTTGAGGTCCTCCATACAGCTGCTGAGAGACGGCCTGTCCAGCGGCACCGTGCCTGCTCAGTTTGATCAACTGTACAGGAAGCGTCCTGGGATGTCCATGTCATGCGCCAGATTGCCGCAAAACGTCTCCAAAAACCGCTATCGGGACATTTCTCCATATGACACCACTCGAGTTGTGTTGAAGGGCGCTGACGATTACATCAACGCGAATTTCATTAATATGGAAATCCCAGGTAAAGGTGAAGTAAAGCGGTATATCGCCTGTCAAGGGCCTCTTCCTGGGACCTGCTCCGACTTCTGGCAGATGGTGTGGGAGCAGAGCGCCGCTCTAGTGGTCATGCTCACGACGCAAGTCGAACGCGGCAGGGTGAAATGCCATCAATACTGGCCGAACGTTTCAGGAAGTGGCACCTATGGAGGCTTTCAGGTTACATGCGTGTCCGAGGAAGGAAATTCGGCGTACCTGCTCAGAGATTTGACTCTTACACACGTGGAGAGTAAAGAGGAAAGGCAGATTTGTCAGATGCAGTACCTGGCGTGGCCCGATCACGGCGTTCCAGACGATTCGTCGGACTTCTTGAACTTCGTCAGTCAAGTACGCAGCAAAAGAGTGGACGCATCAGAACCTGTAGTGGTTCATTGCAGCGCTGGGATTGGTCGCACCGGGGTGCTTATCACCATGGAGACGGCGATGTGTTTGATAGAAAATGGTCAGTCAGTTTATCCTTTAGACATCGTCAGAACCATGAGAGACCAGCGTGCCATGATGATCCAGACCCCTagcCAGTACCGTTTCGTCTGCGAAGCGATTCTAAAAGTTTACGACGAAGAGTTCGTAAAGCCGTGCGAGACTGAGCCTCCGGTCGAAAAGGAAGAATGAACGCCGTCCTTCATCGTTCGCGGGGTTCTTCTGTGATTCACAACTACTGCCAGTGAGATCTGCGCTCGGCTCGCTGTCGCCCCCTGCTGAAAGGCAGTGGACATGACCGCCCGCAAGCTAGAATACAGACGAAAATGCACTATTGCACTTTACAGCGACAAACAATGACTTAAGGgaattttttttggttaaaaaaacaaacaaacaaaaaactaagtATCAGGTTACTGATGAGTAGGTActgttaataatgttaattatttggGTTAGAGAAAGAaatttgcttttgcttttgtgcCAAAAGCTGAAATGAGCCACAGTCCGTGTCAGAATTAACTCTTGCAACTAATGACAGCACGTTTTAtgttctatttatttgttttggggAATTTTTTTTCGCAGTGAACTCGAAAGCAACAGGTGCTCGGCCCGTTCTGCTCCCTTTTCCCGACTGTAACTGTAATCGTTTTAACATTTCCGTTTGAAACATAAGTtgttaacatgcattttttttaaaaaattgtcgaacaaaaaaaaaacgaagctagtttttaattagtttttaccCCGGCGCTTTAAAGATAATCTTTCGCAAAGTACTTAGACTTTTGCGAAGTACTTTTCGTTCCACGGTAACGTTACAGTTGTCGCTCTAAATTTAGGGAAATTAACAGGCCACCAGCTGTGCTGAAAATGAGCCATGGTAAAGATGTTTCTTGCTGCCAAATTTCACAGCTGTTCGCCTCTAAAACCGATCGGTGTGTCGCTTTGGCTAATCGCTATTTATTGCAAGGCTACGTGTGGTACGTAACGGCTGGCGTTTGTATCGTTAAATATGCATCAGGCAGCTGTTCTTCTTTCAGATCCGTGTATGCTGGATCtttgaagcattttatttagaaaacaaagcTGTGAATTTCACGTTAGCTTGGTTTGGCGGAAACCGGACACTCAATTGATAAGTACGGAcgcaaattaaatgtttaatgtatgaTTTAGTCTAGCGTTCTCTCTGGTTAGCGTAAAGATCatcagatatttttaatgaccagTTTTCTTCCATTTTTACAATCAAATTTTCGAAATGTCTGAAAGTAACCGATTACCTTCAGGTTTGACTTGTTCATCTCGTACgattagttttgtgttttttgttgagaaaaagATGCTCTGAAGATACCGGTTTAAATTCAGCTTACGATCGGTAGCGCTCATCCACATCTCCTCTTCTTTAGCTAGTTACCTGTTAGCAGTTACCTACAAAAGGTGGTTCTAGTTCTAGCTATGACTGCGGAGATGATGGCATTTACACAACTCATTGGCCGCTTCAATGTTTTATTCACCTCAAGTGCAAAATTTAAGTATGgatatatttaatgcttttttttttttaagttagcaTTTTCTGTATTCTGAAGAGAAAAGATACTCGAGAATTgtgaagaaaaatgtttttgatacgACACCCCGGACCATCGTAATTGTTTGCCAATGTTTTTATGAACGTCCCCCCCCCCATACAATGTTTTGCGGTGCCATCGCGcgaattattttgaattataagGACCAATCCCGCCCACCGTTTTGAATGTGAGCCGATTTTGCTTCAGTGTACGTCGTTATAGCGCAGCAGCTAGACATTTACTGCCGACTTTGCGTCGGGAGTGGtggtatttttgtatttaacaaaaaaaaaaaaacgaatgaaaaAAGGACAGCACTTTGCAACTGACTGTGGTGGTCAGCTGTGCTACTGTAGAATTTATACTGTAATTGTGTGATGGGGGGGAAAAATAcgctgtttaattatttatgttgaacattttgtcagataTGGACACCTGTGGGGGTGGGAGGGGACTCTTAACTACATAGTGTCATATGTGAAATACTTGTAAATacaatgttatatattaaaagtgttCTGAAAAGATAA

Function

symbol description
ptpn4b Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and cytoplasmic side of plasma membrane. Orthologous to human PTPN4 (protein tyrosine phosphatase non-receptor type 4).

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 4-like isoform X1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0019898 extrinsic component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004725 protein tyrosine phosphatase activity molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
K18037 PTPN4, MEG; tyrosine-protein phosphatase non-receptor type 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223229.1 True 5104 mRNA 0.47 27 6347651 6375093

Neighbor

gene id symbol gene type direction distance location
krt222 krt222,LOC107586952,LOC107663524,LOC107745982,LOC107653582,LOC107755987,LOC107593079 coding downstream 11654 6322433 ~ 6335997 (-)
crygs1 crygs1,LOC107756035,LOC107586953,LOC107663530 coding downstream 25565 6318996 ~ 6322086 (-)
mettl21a mettl21a,LOC107663696,LOC107704411,LOC108415896 coding downstream 39340 6306421 ~ 6308311 (-)
dpp4 dpp4,LOC107663703,LOC107586951,LOC107755996,LOC107593097,LOC107745999,LOC107704406 coding downstream 46148 6286427 ~ 6301503 (-)
pcyt2 pcyt2,LOC107745976,LOC107756034,LOC107704410,LOC107593040,LOC107586950,LOC103356210,LOC105905797 coding downstream 65522 6272453 ~ 6282129 (-)
pth2rb LOC107739359,LOC107587008,LOC107663669,LOC107653586,LOC107746000,LOC107593036 coding upstream 19490 6394583 ~ 6414114 (-)
tmem163b tmem163b,tmem163,LOC107739337,LOC107586956,LOC107663488,LOC107745987,LOC107653588,LOC105909211,LOC103367750,LOC107381042 coding upstream 98688 6473781 ~ 6501308 (-)
zranb3 zranb3,LOC107687885,LOC107663643,LOC107710929 coding upstream 149693 6524786 ~ 6578427 (-)
adarb1a LOC107687876,LOC107586961,LOC107600973,LOC107754241,LOC107653596,LOC107739329 coding upstream 354689 6729782 ~ 6755792 (-)
slx9 LOC107687875,LOC107754253,LOC107739358,LOC107586963 coding upstream 383192 6758285 ~ 6774697 (-)
G150216 krt97,krt96,LOC107663680,LOC107745983,LOC107593038,LOC107739339,LOC107580444 non-coding downstream 2501 6344139 ~ 6345150 (-)
LOC122327580 NA non-coding downstream 33424 6313175 ~ 6314227 (-)
G150273 NA non-coding downstream 163750 6157497 ~ 6183901 (-)
G150271 NA non-coding downstream 192635 6144878 ~ 6155016 (-)
G150234 tmprss9,LOC107704409,LOC107731339,LOC107593090,LOC107695615,LOC107586983 non-coding downstream 492484 5854785 ~ 5855167 (-)
G150322 NA non-coding upstream 2594 6377687 ~ 6381972 (-)
G150325 NA non-coding upstream 9063 6384156 ~ 6386767 (-)
G150453 NA non-coding upstream 222811 6597904 ~ 6599533 (-)
G150442 NA non-coding upstream 227962 6603055 ~ 6606554 (-)
G150456 NA non-coding upstream 232696 6607789 ~ 6609628 (-)
gcga gcga,LOC107755995,LOC107663711,LOC107593098,LOC107704412,LOC107586984 other downstream 62071 6282456 ~ 6285580 (-)
G150276 npb,LOC107587005,LOC107663585,LOC107756033,LOC107704419,LOC107593099 other downstream 110786 6236252 ~ 6236865 (-)
use1 use1,LOC107756022,LOC107745970,LOC107593088 other downstream 354893 5989497 ~ 5992758 (-)
timm13 timm13,LOC107587003,LOC107731338,LOC106573564,LOC107593051 other downstream 486319 5859347 ~ 5861332 (-)
LOC122327537 NA other downstream 583669 5758006 ~ 5763982 (-)
G150440 r3hdm1,LOC107739334 other upstream 140472 6515565 ~ 6659352 (-)
cep70 cep70,LOC107739332,LOC107576760,LOC107653595,LOC107754238,LOC107576761,LOC107687877,LOC107587009,LOC107600947,LOC107682686 other upstream 339701 6714794 ~ 6728690 (-)
glsa glsa,LOC107754246,LOC107600978,LOC107739327,LOC107653599,LOC107586966,LOC107687871 other upstream 447110 6822203 ~ 6939000 (-)
nab1a nab1a,LOC107687893,LOC107653562,LOC107739354,LOC107754250,LOC107600950 other upstream 471797 6846890 ~ 6889657 (-)
mfsd6a mfsd6a,LOC107687869,LOC107739325,LOC107600976,LOC107653600,LOC107754251,LOC105022531 other upstream 490130 6865223 ~ 6873200 (-)

Expression


Co-expression Network