crlf1b (crlf1b,LOC107729674,LOC107676985,LOC107719637)


Basic Information

Item Value
gene id crlf1b
gene name crlf1b,LOC107729674,LOC107676985,LOC107719637
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11176508 ~ 11185087 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223286.1
TAAATTATAGTGTGTCCTAACTATTCAGGCATTACACAATTAGAGTAACATTGGGTGTGGAGCTGCACTGCACGAAACATGCCATTATAAATATGTAGACACAAAATAATCGTGTGTATTTGCTGTAGAACAAACTTCATATGCAGCCTACATCTGTTTCGTGAGGAACAGCAGACAAATACAAAAAGGAAGGATTTTGGGAAGggtttgtttcattattttctcttgTGGCCAACTTAgtatacaaaaagaaaagaaaacactggCTGCAGATGCGCTACTAATAATGACTTGTGGCTGTGTGGTAAGACATGGGAGGAGCTTGAGAAGAATCAACTTTTTCAGCTTTTGAGGCGTGCGCTATATTGATTCTCCTCCAAAAAATAAGTGAGTGAAGGTAAATCCGAGCGTCCTCTCCGCACAATGGTGCTTTCCGAAACCAGCAATGATTTTTACGAAGCTTTCTGGTGATCGaggcttttcattttcaacaatTTATGTGGAGGAGAATGGATTATGCGTGCGCGCGCTCCCACCAGTATGACAAGAATCGAGTTGAGCGCGCGCGCGGCAGACAAATGACAATTTTAgtcattatgttgttttttgtggCGCTTCTTCCATATGCGCTTACAGCACACTTGGCCGTCATATCCCCCCAGGATCCAGTGCTTCACATAGGCTCGAGCATGACTGCGGTGTGCACCATTAGCGCCGAGCTGGAAATAACAGCTAGATCCTTGTACTGGACGCTGAATGGAAAACGCTTGGCTAGAAACACTTATAAGGTCCTCAGCTCGACCGAATCCAGCGTCACACTCCATCAACTCAATGGCTCCTTGCAGCGGTCAGGAGACAACCTGGTTTGCCATCGAAGCAACGGAGAAGTGTTGGCTGGATCATGTCTTTATGTTGGCTCGCCCCCTGAGAAACCCATCAACCTGACATGTTGGTCACGAAACACCAAGGATCTCAGCTGCAGATGGAGTCCGGGAAGTCAAGGAGAGACATtcataaatactaaatatatccTCAAGTACAAACTAAAATGGTACGGTAAAGAGAAAGACTGCGAGGACTACACAGGACAGCTGTATACGTGCTACGTTCCTCGCGACCTTGCCATTTTTACACCATATGAAGTTTGGGTGGAGGGGTCCAATCAGCTTGGCTCTGCCACTTCTGATGTGATCACCTTAGACATTTTAGATGTAGTAACTACAGATCCGCCTCCTGATGTCCTTGTGAGCCGAGTTGGAGATCTGGAAGATCAATTAAGTGTACGTTGGGGGAGTCCTCCTGCTCTGAAAGACTACCTGTTTCAGGCGAAGTATCAGATACGATACCGTGTGGAGGAGAGTGACGAATGGAAGGTTATCGATGATGCTGGGAACCAGACATCTTGTCGGTTAGCGGGTCTCAGAGCCGGCACAGTGTATTTCGTCCAGGTACGCTGCAACCCAATCGGCATCTACGGCTCAAAGAAAGCAGGAATTTGGAGCGACTGGAGCCACTCAACCGCTGCATCGACACCTGGCATTGACAGGTCACATATCGGCTCGTGCGAATCGAAGCCCAGCGAGCACAACTCGACGCTACGGAAGGAGCTTAAGCAGTTTTTCGGCTGGATGCGCAAACACTCTTACGGCTGTACGGACGTCAGCATCAAACTCTACGACCAATGGCGCGTCTGGCTGCAGAAAGCCCAGAAAACGCACGACCAGGTCAGTGAGGACACAACGCACTTCCTTGCGCGACACGTATCAAGACAACAAATCATTACCGTTGGCACACACGATATAAGGCCTGTGcgaaaagaagaagaagcagcaTTTTTGGGACCCACAACAAAGAGAACCAAAGTATCTGTTTATTCTTTTGATCAATAGGCTCACATTTGATTGCGTTTACTAATAGCGAAGCATCATATAATCTTCAGACGTTACCACAACAGAGAGGAAACGACCACTCAAAGTAATCAGCTGGAATGCTAATAAATTCCTTTTAGGTTAGACTGCGCGGCAAAGCTTCAGCTGCGAACCAACCGAGCCCGAGAAGTCTTGTGTGGCGTTCTCGAGCGCTAACCGACATCCGCTGCACGCTCTCTGAACCGATTCAGTGGTTACTGTTGCTTTGGCACTGACGACTGTTGGGAAACTTAGGTCGCTTCATTAGTCACACTGTCCTTTGAAGAACACGATGTAACTGCCACAAGAATGGCTGGTACCAATTACGCTTCTCTGTCCTCATATATCAACTCATCACATTCACTTGTAAATGCCATTGTCTTGCCTTTCAGGTACTACAAAGCGGTAAATCATAGTGAAACTCTAAAGAAGGCTTGGGAGAGTTTGCGGGGGCCTGCGATGACAAGGTTTTTATCACTCTCCAGTGCTTGGGACTTTCATTTGGGACGAGCCGAGACTGTCTAAAGGGATCTGCAAGGAGCCTGTCGTTTGGTGACATGATCTACTGTTTGCCTCCTGCTGCAGTCCCCATCAAACACGTCAAAGGAAGCACGCTTTTGTCTCAGACAATGTTATTTATAAGGgcattaaaacataaagaaaGACTCCAAATTACGAGAgagcataaaatgtttttaagaaagaaGATAATAGGGCATTCTCTCTTTCTGATTGAcctttcatccaaaaaaaagaacCTTTGCAACTCAACgattggagaaaaaaataataataaaaaatttacaaaCTAATTTGCTGAAAGGGAGAATTCGTAAGCGACAACAAAATAtgagcatttaaatattaatctttaaaagtgagttactttaaaaaaattaaacaaggACTGATGCTGCGGATGGTCCAGAATAAACAAAAGCACCgtaaaagtatcataaaataGTCCATTTATCACTATGTCCCAAATCTTCTGAaatcatacaatttttttaaagacatattgaaatttaaagggatagttcacccaaaaactcaCCTTCACATAtcgttccaaatctgtaagaactttgttcatctttggaacgcaaaataagatatttttgattaaatatgagAGTTTTCTGACCCTTATTAGACGGCAAGGATCCTTACACAACCAAAGCTCAGGAA
>XM_043223287.1
AATTATAGTGTGTCCTAACTATTCAGGCATTACACAATTAGAGTAACATTGGGTGTGGAGCTGCACTGCACGAAACATGCCATTATAAATATGTAGACACAAAATAATCGTGTGTATTTGCTGTAGAACAAACTTCATATGCAGCCTACATCTGTTTCGTGAGGAACAGCAGACAAATACAAAAAGGAAGGATTTTGGGAAGggtttgtttcattattttctcttgTGGCCAACTTAgtatacaaaaagaaaagaaaacactggCTGCAGATGCGCTACTAATAATGACTTGTGGCTGTGTGGTAAGACATGGGAGGAGCTTGAGAAGAATCAACTTTTTCAGCTTTTGAGGCGTGCGCTATATTGATTCTCCTCCAAAAAATAAGTGAGTGAAGGTAAATCCGAGCGTCCTCTCCGCACAATGGTGCTTTCCGAAACCAGCAATGATTTTTACGAAGCTTTCTGGTGATCGaggcttttcattttcaacaatTTATGTGGAGGAGAATGGATTATGCGTGCGCGCGCTCCCACCAGTATGACAAGAATCGAGTTGAGCGCGCGCGCGGCAGACAAATGACAATTTTAgtcattatgttgttttttgtggCGCTTCTTCCATATGCGCTTACAGCACACTTGGCCGTCATATCCCCCCAGGATCCAGTGCTTCACATAGGCTCGAGCATGACTGCGGTGTGCACCATTAGCGCCGAGCTGGAAATAACAGCTAGATCCTTGTACTGGACGCTGAATGGAAAACGCTTGGCTAGAAACACTTATAAGGTCCTCAGCTCGACCGAATCCAGCGTCACACTCCATCAACTCAATGGCTCCTTGCAGCGGTCAGGAGACAACCTGGTTTGCCATCGAAGCAACGGAGAAGTGTTGGCTGGATCATGTCTTTATGTTGGCTCGCCCCCTGAGAAACCCATCAACCTGACATGTTGGTCACGAAACACCAAGGATCTCAGCTGCAGATGGAGTCCGGGAAGTCAAGGAGAGACATtcataaatactaaatatatccTCAAGTACAAACTAAAATGGTACGGTAAAGAGAAAGACTGCGAGGACTACACAGGACAGCTGTATACGTGCTACGTTCCTCGCGACCTTGCCATTTTTACACCATATGAAGTTTGGGTGGAGGGGTCCAATCAGCTTGGCTCTGCCACTTCTGATGTGATCACCTTAGACATTTTAGATGTAGTAACTACAGATCCGCCTCCTGATGTCCTTGTGAGCCGAGTTGGAGATCTGGAAGATCAATTAAGTGTACGTTGGGGGAGTCCTCCTGCTCTGAAAGACTACCTGTTTCAGGCGAAGTATCAGATACGATACCGTGTGGAGGAGAGTGACGAATGGAAGGTTATCGATGATGCTGGGAACCAGACATCTTGTCGGTTAGCGGGTCTCAGAGCCGGCACAGTGTATTTCGTCCAGGTACGCTGCAACCCAATCGGCATCTACGGCTCAAAGAAAGCAGGAATTTGGAGCGACTGGAGCCACTCAACCGCTGCATCGACACCTGGCATTGACAGGTCACATATCGGCTCGTGCGAATCGAAGCCCAGCGAGCACAACTCGACGCTACGGAAGGAGCTTAAGCAGTTTTTCGGCTGGATGCGCAAACACTCTTACGGCTGTACGGACGTCAGCATCAAACTCTACGACCAATGGCGCGTCTGGCTGCAGAAAGCCCAGAAAACGCACGACCAGGTACTACAAAGCGGTAAATCATAGTGAAACTCTAAAGAAGGCTTGGGAGAGTTTGCGGGGGCCTGCGATGACAAGGTTTTTATCACTCTCCAGTGCTTGGGACTTTCATTTGGGACGAGCCGAGACTGTCTAAAGGGATCTGCAAGGAGCCTGTCGTTTGGTGACATGATCTACTGTTTGCCTCCTGCTGCAGTCCCCATCAAACACGTCAAAGGAAGCACGCTTTTGTCTCAGACAATGTTATTTATAAGGgcattaaaacataaagaaaGACTCCAAATTACGAGAgagcataaaatgtttttaagaaagaaGATAATAGGGCATTCTCTCTTTCTGATTGAcctttcatccaaaaaaaagaacCTTTGCAACTCAACgattggagaaaaaaataataataaaaaatttacaaaCTAATTTGCTGAAAGGGAGAATTCGTAAGCGACAACAAAATAtgagcatttaaatattaatctttaaaagtgagttactttaaaaaaattaaacaaggACTGATGCTGCGGATGGTCCAGAATAAACAAAAGCACCgtaaaagtatcataaaataGTCCATTTATCACTATGTCCCAAATCTTCTGAaatcatacaatttttttaaagacatattgaaatttaaagggatagttcacccaaaaactcaCCTTCACATAtcgttccaaatctgtaagaactttgttcatctttggaacgcaaaataagatatttttgattaaatatgagAGTTTTCTGACCCTTATTAGACGGCAAGGATCCTTACACAACCAAAGCTCAGGAA

Function

symbol description
crlf1b Predicted to enable cytokine binding activity and cytokine receptor activity. Predicted to be involved in cytokine-mediated signaling pathway and positive regulation of tyrosine phosphorylation of STAT protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of CRLF-CLCF1 complex and receptor complex. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in cold-induced sweating syndrome 1. Orthologous to human CRLF1 (cytokine receptor like factor 1).

NR:

description
cytokine receptor-like factor 1 isoform X4

GO: NA

KEGG:

id description
K24481 CRLF1; cytokine receptor-like factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223286.1 True 3098 mRNA 0.44 7 11176508 11185087
XM_043223287.1 False 2521 mRNA 0.44 8 11176510 11185087

Neighbor

gene id symbol gene type direction distance location
nfil3-4 LOC107676982,LOC107596882,LOC107655201,LOC107719579,LOC107729690,LOC107586432 coding upstream 245557 10923748 ~ 10930951 (+)
foxq2 foxq2,LOC107729705,LOC107586390,LOC107655205,LOC107596879,LOC107719640,LOC107676973 coding upstream 319389 10855815 ~ 10857119 (+)
unc13a si:dkey-110c1.7,LOC107729682,LOC107655208,LOC107675908,LOC107719588 coding upstream 416637 10721100 ~ 10759871 (+)
hmg20b hmg20b,LOC107729671,LOC107586380,LOC107719660,LOC107655186,LOC107675902 coding upstream 456191 10716240 ~ 10720317 (+)
rgmd LOC107726535,LOC107655217,LOC107719593,LOC107596905,LOC107675903 coding upstream 713311 10457205 ~ 10463197 (+)
cpamd8 LOC107593313,LOC107729694,LOC107676967,LOC107586397,LOC107699407 coding downstream 4765 11189852 ~ 11225519 (+)
odf3l2b odf3l2,LOC107593346,LOC107676969,LOC107729669,LOC107699397,LOC107586461 coding downstream 41073 11226160 ~ 11229779 (+)
shc2 shc2,LOC107729700,LOC107593314,LOC107586398,LOC107719564 coding downstream 47648 11232735 ~ 11249556 (+)
shdb shdb,LOC107676987,LOC107729709,LOC107719565,LOC107586400 coding downstream 83861 11268948 ~ 11295523 (+)
plpp2b plpp2b,LOC107676990,LOC107593320,LOC107729714,LOC107719563,LOC107586402,LOC107699401 coding downstream 145618 11330705 ~ 11345014 (+)
G151707 NA non-coding upstream 12180 11128526 ~ 11164328 (+)
LOC122327758 NA non-coding upstream 36130 11128906 ~ 11140378 (+)
G151738 NA non-coding upstream 99439 11075896 ~ 11077069 (+)
G151703 NA non-coding upstream 243513 10932663 ~ 10932995 (+)
G151624 mbd3,LOC108427158 non-coding upstream 336194 10777727 ~ 10840314 (+)
G151815 NA non-coding downstream 111821 11296908 ~ 11297153 (+)
G151813 NA non-coding downstream 149082 11334169 ~ 11384582 (+)
G151820 LOC102206479,LOC100709852,LOC101484522,LOC107676966,LOC107729686 non-coding downstream 202545 11387632 ~ 11388850 (+)
G151832 NA non-coding downstream 241873 11426960 ~ 11427334 (+)
G151841 NA non-coding downstream 280776 11465863 ~ 11468274 (+)
peak3 LOC107676959,LOC107729697,LOC107593354,LOC107655164,LOC107586433,LOC107719638,LOC107593339 other upstream 181564 10935035 ~ 10994944 (+)
si:dkey-172o19.2 LOC107729689,LOC107676945,LOC107596881,LOC107719578 other upstream 254477 10918089 ~ 10922031 (+)
onecut3a onecut3,onecut3a,LOC107596910,LOC107676954,LOC107586457,LOC107719659,LOC107655183,LOC105938949 other upstream 284485 10874428 ~ 10892023 (+)
G151620 NA other upstream 339143 10806052 ~ 10837365 (+)
gatad2ab gatad2ab,gatad2a,LOC107599456,LOC107728574,LOC107554816 other upstream 1183067 9970622 ~ 9993441 (+)
mier2 LOC107729715,LOC107593358,LOC107676949,LOC107699399,LOC107719562,LOC107586401 other downstream 133020 11318107 ~ 11328230 (+)
LOC122327289 capn8,LOC107565180,LOC107755343,LOC107722658,LOC107655376,LOC107655329,LOC107566058,LOC107571859 other downstream 637847 11822934 ~ 11825207 (+)
LOC122327134 senp7,si:dkey-100n23.3,LOC107748206,LOC107600307,LOC107655520,LOC107571594,LOC107717676,LOC107704544,LOC107566043,LOC107704674 other downstream 641478 11826565 ~ 11835134 (+)
LOC122327127 vtg6,LOC107563524,LOC107664867,LOC107715697,LOC107664873,LOC107741562,LOC107570371,LOC107734844,LOC107570369,LOC107664832,LOC107564925,LOC107563523,LOC107715728,LOC107655401,LOC107715731,LOC107655402,LOC107576112,LOC107570370,LOC107734958,LOC107579406 other downstream 825382 12010469 ~ 12276608 (+)
LOC122327107 LOC107563522,LOC107715696,LOC108430069,LOC108271041,LOC105898241 other downstream 990600 12175687 ~ 12189006 (+)

Expression


Co-expression Network