s1pr3a (s1pr3a,LOC107676952,LOC107719654,LOC107729679,LOC107593356,LOC107699398,LOC107586462)


Basic Information

Item Value
gene id s1pr3a
gene name s1pr3a,LOC107676952,LOC107719654,LOC107729679,LOC107593356,LOC107699398,LOC107586462
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11301565 ~ 11305187 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043223301.1
CAGTAATTTCCCTCAGTTACGTGGGATGCCAGTCTAATGACATCGGAATAACACAAACATCAGAGGATGCTCGAGCACGTGCGCGCTTCATCGTCACTGTCCGAAATATTAACGCGCGCGCCCTTACCAAACAAACTCGAATTCAGAACCGTTCAAACGCAGACGACGGAACGTTCACTCGctgcctgtaaaaaaaaacgtgttgtTGAGTTCCCGCCCAGTACGTGAGGGAATGTTGAGGAAAGGAGCGTAATTTGGAGTTTAAGATCAGAACTCGCAGGTgaattattttcagtaataataTGACGGCTCTTACAGCCAGGTCCAAAAACTTTGTTAAAATTGGATATTGTTAAAAGCCGGATGCAAACCGTTTCGATTTGGGAAAAGTGCTTCCAGGATAAACTATTTAACCCGTCTGATCCTTGAGTAGACTACGTTGGAAGCTTTTCATCACTTGAACTTTTGaaggtttatttattaacaagTAACCCAAGATATAGCTGCATCGCTTGAGATAAACTGAGGAATCATAATGTGAGAAGTGTTGGAGTCCTTTCCCAACTTTCTCACTGGAAGGTGCTCATAGACGCCATCTGCTGTTCAAAAGTGCTCGCGGGGACCTCGTGGAAAATGGATGAAGTGTTTAAATCTGGAATGAATGACATTATAGTTAGACATTACAACCACTCGGGCAAGTGGGGAAGGCCAAAGAGCACCGTTACATACAAGACAGCCTTCCTCATTTGCATCTGCGCTCTGATCGTGTTGGAAAACATCACTGTACTACTAGCACTGTGGCGCAACAAGCGCTTCCACAGCCGCATGTACTTTCTCATCGGCAACCTGGCACTTTCAGACTTGTTAGCAGGAGTGGCGTACGTGGTTAACATCTTCACCTCCGGCCGCAATACTTTTTTCCTCAGCACGGGCCAGTGGCTGCTGCGCGAGGGGAGCATGTTTGTGGCACTTAGCGCTTCGACCTTCAGCTTGCTCGCTATTGGGATCGAGCGCCACATGACCATGGTTCGTCTACGGCCGTGTGAGACCACAGGAAGGGGGAGGTTGCTAGCTCTTCTGGGAGCCTGCTGGGCCGTTTCGGTCCTGCTGAGCTCCTTGCCTAGTCTCGGCTGGAACTGTTTGGGCCGACTCCACACTTGCTCCACTGTCCTACCACTGTACGACAAAAGCTACATAGCCTTCTGCATCAGCGTCTTCACGGCCCTCCTAGCGGCAATCGTGGTGCTATACGTGCGCATCTACCTGCTAGTTACGTCCAGCGGGCGCAGAGTGAGTTCCCGGCCATCGGACCGCTCTCTCGCACTTCTGCGCACGGTAGTGATAGTACTGGGAGTTTTTGTGGCCTGTTGGGCTCCCCTTTTTCTGCTACTGCTGCTGGATGTGGGATGCAGTCCGGAGCGGTGCCCGGTTCTCTATAAGGTGGACTGGTTCATCGCTCTGGCCGTGCTCAACTCCGCTCTCAACCCGCTCATCTACACGCTTTCCAGCCGTGAGATGCGGGCCGCCTTCTTCCGTGTGTTATGCTGCTGTTGCTGTCCAACACAGCTGGACTCTATACCAACGGTAGCAGGGGCGGCACTTCCAGGAACAGTCATTCCCACCGCAGAGAACAGCAAATCAAGCATGGCTGGGGCGGCAAGTGTTGCGGCTAAGTCCTCCCTGATGCGAGGTAAAGCTTCCACCCCGTCAAACTCCCACCATCAGCATGGGGACACGTCGCCCCCGGCTGTCACGCACCCCTCGGGGCCAGGAGACCTACTGTCTGCGGTGCTGGTAAAAGCTGGGGCGCTTCCTTCTTTAGGGAAGTTTTGATAAAGATACTAGGGGAGTCTGCACAAAAGAGCAGGATTTTGTTATTTCCCAAGATGTTTGGCGACGGCTCCTTGCAATTACAGACCGTTCTTCAGCTCTTTGGGGATTACAAATTTGGATTTGCTTTTATACAAAAGGCATCCATCGATGATGAGATTTCAAAGATCAACAAACTCAATCAAAGAGAGATTGAACAAACGCTGACCAAAGGATAcacaaactgaatttatttcaacgtgtattaatatttatgaaactGAGCATGTGCTGTGAGCACATAACATAGAGCCACTACAGAATGTAATCACTCAAAAAGCCTAGGTgtgcaatctttttttttttttttttttatcaaaataatctaATTTGCATGAAGGAAAACACCTTAACAGTATTATACACATTATTGTAGCACTCTGTGTGCATGACTGACCTTTAACATTTTCCCAGTTTATTACtagacaaaaacaatatgaataGTTTGCCGATCTTACCTATTACACAAGCTAGCTGTAATACACTTTGAGTGTTTTTAAAGACTGTGGATGTTTATGGTTAATATTCTGTGGATCGGTTTACATGGCAGAATGTAAAAGGAGTAAGATTGTTGCATTGTGAATGTGCTGAAATTTTGATCGTTCTGCTGAGTAGTACTCGTTAACTGACataaaactgacataaaattCAAAGTGTGATTAGTATATGTAAGTGGGGAGAAAAACGAGCAAGCTGCCTCGTCTGTCCTGCTTTTATTGGCATGTAACCACTAGAGGGAGCTGTGACATCACACTGAAATAATCAACTTCACAGAATAATAGCGATGGCAAGCACAACCACATTTGTTCTTTGAATGCAATCAGAGCACTATTATTTAGTCGCTTGGTAGGTGCATCATAGTAACCTCGCAATAAATGGTTTTGCCTGAAAAAA

Function

symbol description
s1pr3a Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway and regulation of metabolic process. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart; pleuroperitoneal region; and solid lens vesicle. Orthologous to human S1PR3 (sphingosine-1-phosphate receptor 3).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 3-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043223301.1 True 2763 mRNA 0.47 2 11301565 11305187

Neighbor

gene id symbol gene type direction distance location
ankrd24 ankrd24,LOC107729675,LOC107719567 coding downstream 35410 11249988 ~ 11266155 (-)
tmem59l tmem59l,LOC107719570,LOC107676980,LOC107729706,LOC107699406,LOC108439280 coding downstream 125570 11162617 ~ 11175995 (-)
ssbp4 ssbp4,LOC107719571,LOC107676978,LOC107729707 coding downstream 172895 11077596 ~ 11128670 (-)
fkbp8 fkbp8,LOC107676977,LOC107719572,LOC107699404,LOC107729668,LOC107586436 coding downstream 225912 11062765 ~ 11075653 (-)
ell ell,LOC107729685,LOC107719573,LOC107655162,LOC107586435 coding downstream 240494 11031722 ~ 11061071 (-)
trnaq-uug_21 NA coding upstream 43193 11348380 ~ 11348451 (-)
tle2b si:dkey-42p8.3,LOC107719559,LOC107676970,LOC107699414,LOC108271164,LOC108430094 coding upstream 77006 11382193 ~ 11426081 (-)
tle5 aes,LOC107586404,LOC107593322,LOC107699415,LOC108430095,LOC108271216 coding upstream 135029 11440216 ~ 11465075 (-)
LOC122327726 LOC107719667,LOC107699403,LOC107593325,LOC107676991,LOC107717979,LOC107586464,LOC100332608,LOC108270593 coding upstream 261830 11567017 ~ 11571678 (-)
LOC122327288 capn2b,LOC107565172,LOC107659328,LOC107722663,LOC107655378,LOC107755344 coding upstream 499628 11804815 ~ 11815578 (-)
G151858 NA non-coding downstream 4102 11297225 ~ 11297463 (-)
G151773 NA non-coding downstream 115646 11184230 ~ 11185919 (-)
G151775 NA non-coding downstream 121175 11179922 ~ 11180390 (-)
G151774 crlf1b,LOC107676985,LOC107729674,LOC107719637,LOC107577518 non-coding downstream 122133 11176563 ~ 11179432 (-)
LOC122327759 NA non-coding downstream 141836 11155787 ~ 11159729 (-)
G151870 NA non-coding upstream 66942 11372129 ~ 11378059 (-)
LOC122327760 NA non-coding upstream 185486 11490673 ~ 11492960 (-)
G151889 NA non-coding upstream 204213 11509400 ~ 11518141 (-)
G151893 NA non-coding upstream 216843 11522030 ~ 11523422 (-)
G151896 NA non-coding upstream 222911 11528098 ~ 11530610 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other downstream 70316 11229974 ~ 11231249 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other downstream 112873 11174143 ~ 11188692 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other downstream 306613 10935052 ~ 10994952 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other downstream 879211 10419127 ~ 10422354 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other downstream 979902 10282022 ~ 10321663 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other upstream 160665 11465852 ~ 11490654 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other upstream 488386 11793573 ~ 11804698 (-)
LOC122327182 NA other upstream 536401 11841588 ~ 11845142 (-)
si:ch211-117l17.6 LOC107655409,LOC107715709,LOC107560696 other upstream 740282 12045469 ~ 12049538 (-)
G152276 wdr47,wdr47b,LOC107741541,LOC107664763,LOC107564929,LOC107715726,LOC107655405 other upstream 837655 12142842 ~ 12145575 (-)

Expression


Co-expression Network