ssbp4 (ssbp4,LOC107719571,LOC107676978,LOC107729707)



Basic Information


Item Value
gene id ssbp4
gene name ssbp4,LOC107719571,LOC107676978,LOC107729707
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056720.1
NCBI id CM032089.1
chromosome length 18002998
location 11077596 ~ 11128670 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043223307.1
CACTAAAGGGGGTAGCTATGGAGATAGAACGTTTTCCTGGCTGCTTTCTTTGACAGGTGTTGAGTGGGGTAAAAGTCTTAAAACAGAATCCAGCATGTACGCCAAAGGTAAAGGAGCTGTCGTCCCTTCTGATAGTCAAGCGAGAGAAAAGTTAGCTTTATACGTGTATGAGTACTTGCTGCATGTTGGCGCACAGAAATCGGCACAGACCTTCCTGTCAGAGATCCGATGGGAGAAGAATATCACATTAGGAGAGCCTCCTGGATTCCTGCACTCATGGTGGTGTGTATTCTGGGATCTGTACTGTGCAGCTCCAGATCGACGGGAGACATGTGAACATTCCAGCGAGGCCAAGGCTTTCCACGACTATAGTGCAGCAGCAGCTCCCAGTCCTGTGATGGGCAACATGCCGCCCAATGACGGCATGCCAGGTGGACCCATGCCTCCCGGCTTCTTTCAAGGCCCACCCGGGTCACAACCATCACCACACTCACAGCCCCCTCCACACAACCCTAACAACCCCATGATGGGGCCACATGGCCAGCCTTTCATGTCTCCAAGGTACCCAGGCGGaccccgcccatcactccgcaTGCCAAATCAGCCTCCCGTTGGAGTCCCAGGGTCACAGCCACTCCTGCCAAACAGTTTGGACCCCACCAGACCGCAAGGACATCCAAACATGGGCGGCCCGATGAGAATGAACCCACCCAGAGGAATGGGAGGCATGGGGCCGCAGAACTACGGCGGTGGAATGAGGCCTCCTCCAAACTCTCTTGGAGGTCCTGGAATGCCTGGCATGAACATgggtCCAGGAGGTCGAGGGCCTTGGCCTAATCCTAACGCAAATTCGATAGCATACTCGTCTTCATCACCAGGAAACTATGTGGGGCCTCCAGGAGGTggcggccctccaggaactccCATCATGCCAAGCCCAGGAGACTCAACGAATTCCAgtgaaaacatttacacaatGATGAATCCAATCGGCCCTGGTGGCAACAGACCGAACTTCCCGATGGGGCCGGGGCCTGATGGTCCGATGGGTGGAATGGGATCAATGGAGCCGCACCATATGAACGGGTCTTTAGGCTCGGGTGATATGGACGGGTTGCCAAAGAACTCTCCGAACAACATGGCAGGTATGAACAATCCCCCAGGAACTCCGCGGGACGATGGGGAGATGACAGGCAACTTCTTAAACCCATTCCAAAGTGAAAGTTATTCACCCAACATGACGATGAGTGTgtgattcttctttttttttatttttatttagtttttattttatatttttaacccGTCCCCCATCCCACTTCCCGTTCTCCTCGTCTCTGCTGCGTTCggcatgttgtttttattttttccgcTCGACCTTCAACTCCCCACGACTGCCTCAAACACTCTGGGCTGACGCGGTGGCGCCCTTCAGCCGCTCGACGCGGCCGCGGAGCGAAAGACGCCCAGTACGAAGCCGAAAGAAAGCGGGCGCCGGGCCTTCTGACGGACTCAAGCTGCCTGCCGGGCTTCGTCACTGGATCGGGACGCTAAGGGCCCTCGAATGAaccaccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtacatgtgcgtgtgtgtgtgggactgTGCCAGGAAGACACTTCATAACTAGCTGCTCATCAGCGTTGAGGCTGGTGGCTTCATTTCAGCcccatttacttttttttttcttctttttttttttttttcgtcggCAACGAAACGCTGAAAGCCGCGGTTGTTTCGATTTTGccgtgtacattttaaaaacggaAAAAGCTAAACTGGTGACGCTAGGGGCAGGAATGGTctcattacaatatatttgtatattattgataatattgttgttataattttcataattgCTATGATGATGATGTACTCATAATTTTATGGATTTTCCTGTAAAGGGCACATTTGTATCTCAACAACATCAATGACAGAATAAGCACACATTCAAATGCACAATGACACTTCTGTTTACATGATTTTAGGTATTTGTTTGTCTCTTCGTTTGAGTTCGTTTTGTCAGATGTCTGCATATACCTCTTCCCGTGTTCTGATGTCATCACTCCCGAGATGTACAACCTCAGTTTTTGTGTCTCCGTCAGCAAAGTGGCTACAATCACTGGTTTAATGCACCCGTCGGCACTGTATTTAAAGATTGGGAGTACATTTCGAAGTCTGAAAGGGTGACGTCGCATATTCACTGCCATCCATTCTTGCCTTGGTCACGAACGGtcaataacaatacattttaccaCCCGTTCTAGATGATTTTGCCGATAGTTGCGATATCATTCGTGTTCATTGTAATTTTGCCACTGCGTGTTTGCCACGTCGTTTCAGAAGtctttttagaaatattatacCCACGTGTTTGTAACGGTAGTTGGAGGCAGGCTGCTCTTACAAGCACGAGTTTCCTTGTGCTCTATAGTCCCATGTCTGTAAATATAtctttttgtttcgtttttttttttttttttttttttttttttttttttttggtcatggACCTTTATTGGTATTTTCAATACACTACTTGTCTGTGAA

Function


symbol description
ssbp4 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SSBP4 (single stranded DNA binding protein 4).

NR:

description
single-stranded DNA-binding protein 3 isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043223307.1 True 2584 mRNA 0.48 18 11077596 11128670

Neighbor


gene id symbol gene type direction distance location
fkbp8 fkbp8,LOC107676977,LOC107719572,LOC107699404,LOC107729668,LOC107586436 coding downstream 1943 11062765 ~ 11075653 (-)
ell ell,LOC107729685,LOC107719573,LOC107655162,LOC107586435 coding downstream 16525 11031722 ~ 11061071 (-)
dot1l dot1l,LOC107719574,LOC107655195,LOC107586394,LOC107729667 coding downstream 49483 11003059 ~ 11028113 (-)
amh LOC107729672,LOC107676960,LOC107593309 coding downstream 76610 10997306 ~ 11000986 (-)
org LOC107729678,LOC107655182,LOC107719657,LOC107676951,LOC107586460 coding downstream 93608 10981892 ~ 10983988 (-)
tmem59l tmem59l,LOC107719570,LOC107676980,LOC107729706,LOC107699406,LOC108439280 coding upstream 33947 11162617 ~ 11175995 (-)
ankrd24 ankrd24,LOC107729675,LOC107719567 coding upstream 121318 11249988 ~ 11266155 (-)
s1pr3a s1pr3a,LOC107676952,LOC107719654,LOC107729679,LOC107593356,LOC107699398,LOC107586462 coding upstream 172895 11301565 ~ 11305187 (-)
trnaq-uug_21 NA coding upstream 219710 11348380 ~ 11348451 (-)
tle2b si:dkey-42p8.3,LOC107719559,LOC107676970,LOC107699414,LOC108271164,LOC108430094 coding upstream 253523 11382193 ~ 11426081 (-)
G151762 NA non-coding downstream 31369 11043997 ~ 11046227 (-)
G151704 NA non-coding downstream 144175 10932994 ~ 10933421 (-)
G151702 NA non-coding downstream 145087 10930882 ~ 10932509 (-)
G151668 NA non-coding downstream 293354 10783638 ~ 10784242 (-)
G151616 NA non-coding downstream 361639 10715425 ~ 10715957 (-)
LOC122327759 NA non-coding upstream 27117 11155787 ~ 11159729 (-)
G151774 crlf1b,LOC107676985,LOC107729674,LOC107719637,LOC107577518 non-coding upstream 47893 11176563 ~ 11179432 (-)
G151775 NA non-coding upstream 51252 11179922 ~ 11180390 (-)
G151773 NA non-coding upstream 55560 11184230 ~ 11185919 (-)
G151858 NA non-coding upstream 168555 11297225 ~ 11297463 (-)
oaz1a oaz1a,oaz1s,oaz1,LOC107719576,LOC107655198,LOC107586434 other downstream 82644 10935052 ~ 10994952 (-)
micos13 si:dkey-78l4.14,LOC107596903,LOC107719663,LOC107586453,LOC107675912,LOC107655188 other downstream 655242 10419127 ~ 10422354 (-)
polrmt LOC107687709,LOC107728563,LOC107569934,LOC107655172,LOC107719647,LOC107569035,LOC101483880 other downstream 755933 10282022 ~ 10321663 (-)
G151425 NA other downstream 1094449 9957811 ~ 9983147 (-)
gpx4a gpx4a,LOC108429535 other downstream 1574590 9498669 ~ 9503006 (-)
rex1bd si:ch211-87h14.3,clg08h19orf60,cssa23h19orf60,LOC107676986,LOC107729673,LOC107593355,LOC107719569,LOC108439285,LOC103025814 other upstream 45473 11174143 ~ 11188692 (-)
cks2 cks2,LOC107699408,LOC107593315,LOC107729701,LOC103026129,LOC108230759,LOC105927846,LOC106584418 other upstream 101304 11229974 ~ 11231249 (-)
gna11a LOC107717982,LOC107676956,LOC107586405,LOC107699416,LOC107719558 other upstream 337182 11465852 ~ 11490654 (-)
LOC122327290 LOC107655377,LOC107755342,LOC107565170,LOC107659327 other upstream 664903 11793573 ~ 11804698 (-)
LOC122327182 NA other upstream 712918 11841588 ~ 11845142 (-)

Expression



Co-expression Network